HHsearch alignment for GI: 254781112 and conserved domain: pfam03466
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=96.99 E-value=0.0024 Score=40.32 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=105.8
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
T Consensus 4 ~~G~i~I~~~~~~~~-------------~~lp~~l~~f~~~~P~i~i~i~~~~~~~i~~~l~~g~~Di~i~~~~~~~--~ 68 (209)
T pfam03466 4 PRGRLRIGAPPTFAA-------------YLLPPLLARFRERYPDVELELREGDSEELLDLLAEGELDLAIRRGPPDD--P 68 (209)
T ss_pred CCEEEEEEEEHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCCCC--C
T ss_conf 878999993889999-------------9999999999998889289999898488999998698148873178999--9
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHHH
Q ss_conf 2002333222222222111222----21111123343202310-1012----233201345---4213368557777554
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLLL 185 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~ 185 (274)
T Consensus 69 ~~-~~~~l~~~~~~~~~s~~~~l~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 147 (209)
T pfam03466 69 GL-EARPLFEEPLVLVAPPDHPLAAGEPVSLEDLADEPLILLEPGSGLRDLVDRALERAGLRPRVALEVNSLEALLAAVA 147 (209)
T ss_pred CE-EEEEEEEEEEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 80-89997624136553367055428975435514665798569987137998778764876302467478799999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCC
Q ss_conf 4321003665589999998458766732623-67768770799981899
Q gi|254781112|r 186 SKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 186 ~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~ 233 (274)
T Consensus 148 ~g~Gi-~~lp~~~~~~~~~~----~~L~~i~~~~~~~~~~~~li~~~~~ 191 (209)
T pfam03466 148 AGLGI-ALLPRSAVARELAD----GRLVVLPLPDPPLPRPIYLVYRKGR 191 (209)
T ss_pred HCCEE-EECCHHHHHHHHHC----CCEEEEECCCCCCCCEEEEEEECCC
T ss_conf 49999-99139999988758----9989995888887447999998949