HHsearch alignment for GI: 254781112 and conserved domain: pfam03480
>pfam03480 SBP_bac_7 Bacterial extracellular solute-binding protein, family 7. This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component.
Probab=96.73 E-value=0.0012 Score=42.28 Aligned_cols=103 Identities=14% Similarity=0.020 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 21111123343202310101223320134542133685577775544321003665589999998458766732623677
Q gi|254781112|r 140 DIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRM 219 (274)
Q Consensus 140 ~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
T Consensus 126 pi~~~~DlkG~KiR~~~~~~~~~~~~alGa~pv~~~~~-evy~aLq~GvvDg~~~~~~~~~~-~-~~~ev~ky~--~~~~ 200 (285)
T pfam03480 126 PINSPEDLKGLKLRVPPSPLLGEVFKALGANPTPMPFG-EVYTALQTGVVDGQENPLSNIYS-Q-KFYEVQKYL--TETN 200 (285)
T ss_pred CCCCHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCCEEEEECCCHHHHH-H-CHHHHCCEE--EECC
T ss_conf 88997996798288358679999999859974015758-89999970846267537135654-0-412113367--2256
Q ss_pred CCCCCEEEEEECC-----CHHHHHHHHHHHHHH
Q ss_conf 6877079998189-----989999999999999
Q gi|254781112|r 220 KDNSAVAFMMRKG-----NNKLTRSINEILCAI 247 (274)
Q Consensus 220 ~~~~~~~~~~~k~-----~~~L~~~in~~l~~l 247 (274)
T Consensus 201 ~~~~~~~~~~n~~~w~~L~~~~q~~i~~a~~~a 233 (285)
T pfam03480 201 HGYLDYLVVMNKDTWDSLPPDLQAILEEAAKEA 233 (285)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 335678999249999649999999999999999