HHsearch alignment for GI: 254781112 and conserved domain: smart00079

>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb

Probab=99.12  E-value=4.4e-10  Score=82.05  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=91.9

Q ss_pred             CCCCCCCCC---CCEEEECCCHHHHHHHCCCC-------------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             111112334---32023101012233201345-------------42133685577775544321003665589999998
Q gi|254781112|r  141 IRSFKDLTD---KTVAQILGTDLSRFAKELKS-------------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLE  204 (274)
Q Consensus       141 ~~~~~dL~g---~~V~~~~g~~~~~~l~~~~~-------------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~  204 (274)
T Consensus         2 I~s~~DL~~q~~i~yGtv~~ss~~~fF~~s~~~~y~~mw~~m~~~~~~~v~~~~eGv~rv~~g~-yAfi~e~~~l~y~~~   80 (134)
T smart00079        2 ITSVEDLAKQTKIEYGTIRGSSTLAFFKRSGNPEYSRMWNYMSASPSVFVKSYAEGVQRVRVSN-YAFLMESTYLDYELS   80 (134)
T ss_pred             CCCHHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC-CEEECCCHHHHHHHC
T ss_conf             7998998428872016878963899988778658999999986285556677899999998078-235505147899860


Q ss_pred             HCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf             4587667326236776877079998189989999999999999979859999987678
Q gi|254781112|r  205 RRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD  262 (274)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g  262 (274)
T Consensus        81 ~---~-C~l~~vG~~f~~~~ygia~~kgSp-~~~~is~~Il~l~e~G~l~~l~~kW~~  133 (134)
T smart00079       81 Q---N-CDLMTVGENFGRKGYGIAFPKGSP-LRDDLSRAILKLSESGELQKLENKWWK  133 (134)
T ss_pred             C---C-CCEEEECEEEECCCEEEEECCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf             6---7-874895306641545788339981-499999999998857879999986169