HHsearch results for GI: 254781112 and protein with PDBid: 1al3_A
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=92.32 E-value=0.16 Score=27.77 Aligned_cols=156 Identities=10% Similarity=0.080 Sum_probs=90.8
Q ss_pred EEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCC
Q ss_conf 52167899762-998555668988988643103221100003675675420023332222222221112222----1111
Q gi|254781112|r 70 IDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD----IRSF 144 (274)
Q Consensus 70 ~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~----~~~~ 144 (274)
.+++..+.++. ++++++...+-.+.++.|.+|++|++........+ .-..+.|+.....++++.++.+. --++
T Consensus 109 ~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~l~~~~~i~~ 186 (324)
T 1al3_A 109 PGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLY--DDLVMLPCYHWNRSIVVTPEHPLATKGSVSI 186 (324)
T ss_dssp HHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTT--SCEEEEEEEEECEEEEECTTSTTTTTSCCCH
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCC--CCEEEEEEEEEEEEEEECCCCHHCCCCCCCH
T ss_conf 99999999758982899997987999866747982588630676776--6505898653005799746522103999999
Q ss_pred CCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC
Q ss_conf 123343202310-1012----233201345---42133685577775544321003665589999998458766732623
Q gi|254781112|r 145 KDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA 216 (274)
Q Consensus 145 ~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (274)
+||.+.++.... ++.. ..+....+. ....+++....+.++.+|..= .+.+...... . .......+.
T Consensus 187 ~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi-~~lp~~~~~~----~-~~~~lv~~~ 260 (324)
T 1al3_A 187 EELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV-GVIASMAVDP----V-SDPDLVKLD 260 (324)
T ss_dssp HHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTSCE-EEEEGGGCCT----T-TCTTSEEEE
T ss_pred HHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEE-EECHHHHHHH----H-HCCCEEEEE
T ss_conf 999628772048998489999999997699875699999999999999939979-9725989738----7-489989995
Q ss_pred -CCCCCCCCEEEEEECCC
Q ss_conf -67768770799981899
Q gi|254781112|r 217 -DRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 217 -~~~~~~~~~~~~~~k~~ 233 (274)
........++++.+++.
T Consensus 261 ~~~~~~~~~~~l~~r~~~ 278 (324)
T 1al3_A 261 ANGIFSHSTTKIGFRRST 278 (324)
T ss_dssp CBTTBCCEEEEEEEETTC
T ss_pred CCCCCCCCEEEEEEECCC
T ss_conf 878886557999996968