HHsearch results for GI: 254781112 and protein with PDBid: 1al3_A

>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=92.32  E-value=0.16  Score=27.77  Aligned_cols=156  Identities=10%  Similarity=0.080  Sum_probs=90.8

Q ss_pred             EEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCC
Q ss_conf             52167899762-998555668988988643103221100003675675420023332222222221112222----1111
Q gi|254781112|r   70 IDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD----IRSF  144 (274)
Q Consensus        70 ~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~----~~~~  144 (274)
                      .+++..+.++. ++++++...+-.+.++.|.+|++|++........+  .-..+.|+.....++++.++.+.    --++
T Consensus       109 ~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~l~~~~~i~~  186 (324)
T 1al3_A          109 PGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLY--DDLVMLPCYHWNRSIVVTPEHPLATKGSVSI  186 (324)
T ss_dssp             HHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTT--SCEEEEEEEEECEEEEECTTSTTTTTSCCCH
T ss_pred             HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCC--CCEEEEEEEEEEEEEEECCCCHHCCCCCCCH
T ss_conf             99999999758982899997987999866747982588630676776--6505898653005799746522103999999


Q ss_pred             CCCCCCCEEEEC-CCHH----HHHHHCCCC---CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC
Q ss_conf             123343202310-1012----233201345---42133685577775544321003665589999998458766732623
Q gi|254781112|r  145 KDLTDKTVAQIL-GTDL----SRFAKELKS---HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA  216 (274)
Q Consensus       145 ~dL~g~~V~~~~-g~~~----~~~l~~~~~---~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (274)
                      +||.+.++.... ++..    ..+....+.   ....+++....+.++.+|..= .+.+......    . .......+.
T Consensus       187 ~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi-~~lp~~~~~~----~-~~~~lv~~~  260 (324)
T 1al3_A          187 EELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV-GVIASMAVDP----V-SDPDLVKLD  260 (324)
T ss_dssp             HHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTSCE-EEEEGGGCCT----T-TCTTSEEEE
T ss_pred             HHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEE-EECHHHHHHH----H-HCCCEEEEE
T ss_conf             999628772048998489999999997699875699999999999999939979-9725989738----7-489989995


Q ss_pred             -CCCCCCCCEEEEEECCC
Q ss_conf             -67768770799981899
Q gi|254781112|r  217 -DRMKDNSAVAFMMRKGN  233 (274)
Q Consensus       217 -~~~~~~~~~~~~~~k~~  233 (274)
                       ........++++.+++.
T Consensus       261 ~~~~~~~~~~~l~~r~~~  278 (324)
T 1al3_A          261 ANGIFSHSTTKIGFRRST  278 (324)
T ss_dssp             CBTTBCCEEEEEEEETTC
T ss_pred             CCCCCCCCEEEEEEECCC
T ss_conf             878886557999996968