HHsearch results for GI: 254781112 and protein with PDBid: 1ixc_A
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=94.84 E-value=0.18 Score=27.45 Aligned_cols=173 Identities=14% Similarity=0.092 Sum_probs=101.2
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
..+.+++++.+.... .+...++..+.++. ++++++...++...++.|.+|++|++.+..... ..
T Consensus 89 ~~~~i~~~~~~~~~~-------------~~l~~~~~~~~~~~p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~~~~~--~~ 153 (294)
T 1ixc_A 89 DVGELSVAYFGTPIY-------------RSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPR--HP 153 (294)
T ss_dssp CCEEEEEEECSGGGG-------------THHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCC--CT
T ss_pred CCCEEEEECCCCHHH-------------HHHHHHHHHHHHCCCCCCCCCEEECCHHCCCCCCCCCEEEEEECCCCC--CC
T ss_conf 652378732530799-------------999999999753187644430452031003211479646888516777--87
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEEEC-CC--HH----HHHHHCCCC---CCEEECCHHHHHHH
Q ss_conf 200233322222222211122221----111123343202310-10--12----233201345---42133685577775
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDI----RSFKDLTDKTVAQIL-GT--DL----SRFAKELKS---HLVFSHNFEQSLQL 183 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~----~~~~dL~g~~V~~~~-g~--~~----~~~l~~~~~---~~~~~~~~~~~~~~ 183 (274)
.+. +.|+.....+++++++.+.. -+++|+.+....... +. .+ ..++++.+. ....+++....+.+
T Consensus 154 ~l~-~~~l~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 232 (294)
T 1ixc_A 154 GIE-IVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALAL 232 (294)
T ss_dssp TEE-EEEEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHH
T ss_pred CCC-CCCCCCCEEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf 542-2201352079998273076539999999981899799638767514677777653245477446886579999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCC
Q ss_conf 54432100366558999999845876673262367768770799981899
Q gi|254781112|r 184 LLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGN 233 (274)
Q Consensus 184 l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 233 (274)
+.+|..-+++ +.... .....+...+.+.+ +.....+++..++++
T Consensus 233 v~~g~gia~l-p~~~~----~~~~~~~~~~~l~~-~~~~~~~~li~~~~~ 276 (294)
T 1ixc_A 233 TMAGAASSIV-PASVA----AIRWPDIAFARIVG-TRVKVPISCIFRKEK 276 (294)
T ss_dssp HHTTSCBEEE-EHHHH----TSCCTTEEEEEECC-TTCEEEEEEEEESSS
T ss_pred HHHCCEEEEC-CHHHH----HHHCCCEEEEECCC-CCCEEEEEEEEECCC
T ss_conf 9949979981-08898----55229859997789-886038999997999