HHsearch results for GI: 254781112 and protein with PDBid: 1lst_A
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=100.00 E-value=1.7e-39 Score=262.58 Aligned_cols=225 Identities=25% Similarity=0.411 Sum_probs=196.4
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHHHH
Q ss_conf 89589996289987248704699848898852167899762998555668988988643103221100-00367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~ 118 (274)
.++||||++.+||||+|. |++|++.|+++|+++++++++|++++|+..+|.++...+.+|++|+++ +.+++++|.+.
T Consensus 3 p~tirv~~~~~~pP~~~~--d~~g~~~G~~~Dl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~eR~~~ 80 (239)
T 1lst_A 3 PQTVRIGTDTTYAPFSSK--DAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE 80 (239)
T ss_dssp CSEEEEEECSCBTTTBEE--CTTCCEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHHH
T ss_pred CCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 986999989997892589--999988870999999999995996899980307678998668767899678799789852
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC----CCCCCEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 002333222222222111222211111233432023101012233201----3454213368557777554432100366
Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE----LKSHLVFSHNFEQSLQLLLSKRTDATMI 194 (274)
Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~grvD~~~~ 194 (274)
+.||.||......++++++...+++++||+|++||++.|+.++..+.. .+.+++.+.+..+++.++.+||+|+++.
T Consensus 81 ~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~vD~~i~ 160 (239)
T 1lst_A 81 IAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQ 160 (239)
T ss_dssp CEECSCSBCCCEEEEEETTCCCCSSHHHHTTCEEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEE
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCEEEEEE
T ss_conf 01357457414311001588767997896899899985752776666541331023563089899999998497139994
Q ss_pred CHHHHHHHHHHCCCCCCCEEE----CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 558999999845876673262----367768770799981899899999999999999798599999876788877
Q gi|254781112|r 195 PDIPFFNFLERRPHDGNLFKI----ADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
+...+.+++.+.+........ ...+....+++++++|++++|++.||++|.+|++||++++|++||||.|+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~~~~~G~~~~I~~kyf~~~~~ 236 (239)
T 1lst_A 161 DEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVY 236 (239)
T ss_dssp EHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSSCTT
T ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 3899999999675666523416644454235640799990899999999999999999795999999987799999