HHsearch results for GI: 254781112 and protein with PDBid: 1pb7_A
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=100.00 E-value=5.3e-36 Score=241.00 Aligned_cols=221 Identities=15% Similarity=0.200 Sum_probs=184.6
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-----------------CHHHHHHHHH
Q ss_conf 88589589996289987248704699848898852167899762998555668-----------------9889886431
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-----------------AVSGLITGLD 99 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-----------------~~~~~~~~l~ 99 (274)
...++.++++++.++||+.|.. .+|++.||++||+++|++++|++++|+++ +|++++.+|+
T Consensus 37 ~~~~~~~~~~~~~~~~p~~~~~--~~g~~~G~~vDl~~~ia~~lg~~~e~~~~~~~~~g~~~~~~~~~~~~w~~~~~~l~ 114 (292)
T 1pb7_A 37 DPVKKVICTGPNDTSPGSPRHT--VPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELL 114 (292)
T ss_dssp CBCCCEEEEEEC--------CE--EEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCCCC--CCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 3457428951168888633127--99976998499999999983994799986676545433346556688889999986
Q ss_pred CCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC----CEEEECCCHHHHHHHCC-----
Q ss_conf 03221100-0036756754200233322222222211122221111123--343----20231010122332013-----
Q gi|254781112|r 100 TNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDL--TDK----TVAQILGTDLSRFAKEL----- 167 (274)
Q Consensus 100 ~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL--~g~----~V~~~~g~~~~~~l~~~----- 167 (274)
+|++|+++ ++++|++|++.+.||.||+..+..+++++++. +...+++ +++ ++|+..++..+.++++.
T Consensus 115 ~g~~Di~~~~~~~t~eR~~~~~Fs~Py~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (292)
T 1pb7_A 115 SGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR-ITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST 193 (292)
T ss_dssp HTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC-CCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHH
T ss_pred CCCEEEEEECCCCCHHHHHHCCCCCEECCCCEEEEEECCCC-CCCCCHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 79767998668799899942666510124776899986886-56453033068633269978664799999986466653
Q ss_pred ---CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf ---45421336855777755443210036655899999984587667326236776877079998189989999999999
Q gi|254781112|r 168 ---KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEIL 244 (274)
Q Consensus 168 ---~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l 244 (274)
..++..+++..+++++|.+|++|+++.+.....++..+.+. +.+..++....+++++++|+++ |++.||.+|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~k~~~-l~~~in~al 268 (292)
T 1pb7_A 194 MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD----LVTTGELFFRSGFGIGMRKDSP-WKQNVSLSI 268 (292)
T ss_dssp HHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT----EEECSSCSEEEEECCEEETTCS-SHHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC----EEEECCCCCCCEEEEEEECCHH-HHHHHHHHH
T ss_conf 06774699828899999998779735996258999999986898----7993776666128999908759-999999999
Q ss_pred HHHHHCCHHHHHHHHHCCCCC
Q ss_conf 999979859999987678887
Q gi|254781112|r 245 CAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 245 ~~l~~~G~~~~I~~kw~g~d~ 265 (274)
.+|+++|++++|++||||..-
T Consensus 269 ~~l~~~G~~~~l~~KW~~~~~ 289 (292)
T 1pb7_A 269 LKSHENGFMEDLDKTWVRYQE 289 (292)
T ss_dssp HHHHHSSHHHHHHHHHTSSSC
T ss_pred HHHHHCCHHHHHHHHCCCCCC
T ss_conf 999979899999986789998