HHsearch results for GI: 254781112 and protein with PDBid: 1pb7_A

>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=100.00  E-value=5.3e-36  Score=241.00  Aligned_cols=221  Identities=15%  Similarity=0.200  Sum_probs=184.6

Q ss_pred             HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-----------------CHHHHHHHHH
Q ss_conf             88589589996289987248704699848898852167899762998555668-----------------9889886431
Q gi|254781112|r   37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-----------------AVSGLITGLD   99 (274)
Q Consensus        37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-----------------~~~~~~~~l~   99 (274)
                      ...++.++++++.++||+.|..  .+|++.||++||+++|++++|++++|+++                 +|++++.+|+
T Consensus        37 ~~~~~~~~~~~~~~~~p~~~~~--~~g~~~G~~vDl~~~ia~~lg~~~e~~~~~~~~~g~~~~~~~~~~~~w~~~~~~l~  114 (292)
T 1pb7_A           37 DPVKKVICTGPNDTSPGSPRHT--VPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELL  114 (292)
T ss_dssp             CBCCCEEEEEEC--------CE--EEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCCCCCCC--CCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             3457428951168888633127--99976998499999999983994799986676545433346556688889999986


Q ss_pred             CCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC----CEEEECCCHHHHHHHCC-----
Q ss_conf             03221100-0036756754200233322222222211122221111123--343----20231010122332013-----
Q gi|254781112|r  100 TNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDL--TDK----TVAQILGTDLSRFAKEL-----  167 (274)
Q Consensus       100 ~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL--~g~----~V~~~~g~~~~~~l~~~-----  167 (274)
                      +|++|+++ ++++|++|++.+.||.||+..+..+++++++. +...+++  +++    ++|+..++..+.++++.     
T Consensus       115 ~g~~Di~~~~~~~t~eR~~~~~Fs~Py~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  193 (292)
T 1pb7_A          115 SGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR-ITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST  193 (292)
T ss_dssp             HTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC-CCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHH
T ss_pred             CCCEEEEEECCCCCHHHHHHCCCCCEECCCCEEEEEECCCC-CCCCCHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             79767998668799899942666510124776899986886-56453033068633269978664799999986466653


Q ss_pred             ---CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf             ---45421336855777755443210036655899999984587667326236776877079998189989999999999
Q gi|254781112|r  168 ---KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEIL  244 (274)
Q Consensus       168 ---~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l  244 (274)
                         ..++..+++..+++++|.+|++|+++.+.....++..+.+.    +.+..++....+++++++|+++ |++.||.+|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~k~~~-l~~~in~al  268 (292)
T 1pb7_A          194 MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD----LVTTGELFFRSGFGIGMRKDSP-WKQNVSLSI  268 (292)
T ss_dssp             HHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT----EEECSSCSEEEEECCEEETTCS-SHHHHHHHH
T ss_pred             CCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC----EEEECCCCCCCEEEEEEECCHH-HHHHHHHHH
T ss_conf             06774699828899999998779735996258999999986898----7993776666128999908759-999999999


Q ss_pred             HHHHHCCHHHHHHHHHCCCCC
Q ss_conf             999979859999987678887
Q gi|254781112|r  245 CAIHLDGTYKKIFDRYFDKNI  265 (274)
Q Consensus       245 ~~l~~~G~~~~I~~kw~g~d~  265 (274)
                      .+|+++|++++|++||||..-
T Consensus       269 ~~l~~~G~~~~l~~KW~~~~~  289 (292)
T 1pb7_A          269 LKSHENGFMEDLDKTWVRYQE  289 (292)
T ss_dssp             HHHHHSSHHHHHHHHHTSSSC
T ss_pred             HHHHHCCHHHHHHHHCCCCCC
T ss_conf             999979899999986789998