HHsearch results for GI: 254781112 and protein with PDBid: 1twy_A
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=91.13 E-value=0.039 Score=31.51 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=54.8
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH
Q ss_conf 589589996289987248704699848898852167899762-998555668988988643103221100-003675675
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274)
+..+|+|+......|. .-++.++..++. |+++++....-...+..|.+|.+|+.. +...+++..
T Consensus 26 ~~~~i~i~gs~s~~~l--------------~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s~~~~~~e~ 91 (290)
T 1twy_A 26 QASEITISGSTSVARI--------------MDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEA 91 (290)
T ss_dssp --CEEEEEECHHHHHH--------------HHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCTTTC
T ss_pred CCCEEEEEECCHHHHH--------------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 4886999960549999--------------99999999988889579997168679999998268641225540013466
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC---------------CCCCCCCCCCC
Q ss_conf 4200233322222222211122---------------22111112334
Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQ---------------QDIRSFKDLTD 149 (274)
Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~---------------~~~~~~~dL~g 149 (274)
+.-.-..|+......+++.+++ ..+++|+|+.+
T Consensus 92 ~~~~~~~~ia~~~~~ivv~~~n~~~~ls~~~L~~i~~g~it~W~~~~~ 139 (290)
T 1twy_A 92 QNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGG 139 (290)
T ss_dssp CTTCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHHHTSCCBGGGGTS
T ss_pred HCCCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf 345056778860257640577852345898985644287675310489