HHsearch results for GI: 254781112 and protein with PDBid: 1us5_A
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=97.96 E-value=1e-06 Score=59.90 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=84.1
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHH-CCCCCCCCCCC-HHHHHHHHHCCCCCCCHHCCCC-------
Q ss_conf 58999628998724870469984889885216789976-29985556689-8898864310322110000367-------
Q gi|254781112|r 42 ALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHR-LNLKVEFFETA-VSGLITGLDTNRYDVLVNVAIT------- 112 (274)
Q Consensus 42 ~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~-lg~~~~~~~~~-~~~~~~~l~~g~~D~~~~~~~t------- 112 (274)
.|++++.+ | .|.+.-+...|.+.+.+. -|++++.++.. ...-+..|.+|++|+....+..
T Consensus 20 ~l~i~tg~---~--------gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d~a~~~~~~~~~~~~~ 88 (314)
T 1us5_A 20 FITIGSGS---T--------TGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQG 88 (314)
T ss_dssp EEEEECCC---T--------TSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHT
T ss_pred EEEEEECC---C--------CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC
T ss_conf 48999799---9--------971499999999999735898489998078889999999769971999750899999846
Q ss_pred -----HH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-CCHH----HHHHHCCCC-----CCEEEC
Q ss_conf -----56--754200233322222222211122221111123343202310-1012----233201345-----421336
Q gi|254781112|r 113 -----PE--RQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQIL-GTDL----SRFAKELKS-----HLVFSH 175 (274)
Q Consensus 113 -----~e--R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~-g~~~----~~~l~~~~~-----~~~~~~ 175 (274)
.+ ..+.+.---+++.....+++|+++ .+++++||+|+||++.. |+.. ..+++..+. ..+...
T Consensus 89 ~g~~~~~~~~~~~lr~v~~~~~~~~~~~v~~ds-~I~s~~DL~Gkrv~~g~~gs~~~~~~~~~l~~~g~~~~d~~~v~~~ 167 (314)
T 1us5_A 89 CCIPAFEGKPVKTIRALAALYPEVVHVVARKDA-GIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRV 167 (314)
T ss_dssp CSSTTTTTCCCTTEEEEEEEEEEEEEEEEETTS-SCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECC
T ss_pred CCCCCCCCCCCCCEEEEEEECHHHHEEEECCCC-CCCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 687533457540402788705113313303777-7677888088775136888513668999999809983446323426
Q ss_pred CHHHHHHHHHHHHHHCCCC
Q ss_conf 8557777554432100366
Q gi|254781112|r 176 NFEQSLQLLLSKRTDATMI 194 (274)
Q Consensus 176 ~~~~~~~~l~~grvD~~~~ 194 (274)
+..++..+|.+|++|+++.
T Consensus 168 ~~~~~~~al~~g~iDa~~~ 186 (314)
T 1us5_A 168 SASQGIQLMQDKRADALFY 186 (314)
T ss_dssp CHHHHHHHHHTTSCSEEEE
T ss_pred CHHHHHHHHHCCCCCEEEE
T ss_conf 8889999974797527998