HHsearch results for GI: 254781112 and protein with PDBid: 1xs5_A
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=97.93 E-value=1.1e-05 Score=53.53 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=108.4
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCH-HCC-----CC
Q ss_conf 89589996289987248704699848898852167899762998555668-988988643103221100-003-----67
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLV-NVA-----IT 112 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~-~~~-----~t 112 (274)
.++||||..+. |.. . -.++++..+++.|++++++.. ++.....+|.+|++|+.. +.. +.
T Consensus 2 ~~ti~iG~~~~--~~~-------~-----~l~~~k~~~k~~Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~ 67 (241)
T 1xs5_A 2 DETVGVGVLSE--PHA-------R-----LLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFN 67 (241)
T ss_dssp CEEEEEEECST--THH-------H-----HHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHH
T ss_pred CCEEEEEECCC--CHH-------H-----HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHH
T ss_conf 93299996069--859-------9-----999999999974988999993881778999976997679855788999988
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCHHHHHH----HCCC-CC-------------C--
Q ss_conf 56754200233322222222211122221111123-34320231010122332----0134-54-------------2--
Q gi|254781112|r 113 PERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDL-TDKTVAQILGTDLSRFA----KELK-SH-------------L-- 171 (274)
Q Consensus 113 ~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL-~g~~V~~~~g~~~~~~l----~~~~-~~-------------~-- 171 (274)
......+....++......++.++ +.++.|+ +|++|++..++..+..+ .+.+ .. +
T Consensus 68 ~~~~~~l~~v~~~~~~~~~l~~~~----~~s~~d~~~gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~ 143 (241)
T 1xs5_A 68 QEHNGDLVSVGNVHVEPLALYSRT----YRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQ 143 (241)
T ss_dssp HHHTCCEEEEEEEEECCCEEECSS----CCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEE
T ss_pred HHCCCCEEEEEEECCCCEEEEECC----CCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHH
T ss_conf 546973899988414654888368----6776673488769825888279999999997588134368887677656653
Q ss_pred ----EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC--CHHHHHHHHHHHH
Q ss_conf ----1336855777755443210036655899999984587667326236776877079998189--9899999999999
Q gi|254781112|r 172 ----VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG--NNKLTRSINEILC 245 (274)
Q Consensus 172 ----~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~L~~~in~~l~ 245 (274)
......+.+......|.+|+++......... ........+.... ...+....+++++. +++....+-+++
T Consensus 144 ~~~~~~~~~~~~a~~a~~~~~vda~~~~~p~~~~a--~~~~~~~~l~~~~-~~~~~~~~lv~r~~~~~~~~i~~l~~a~- 219 (241)
T 1xs5_A 144 NVRNVVLQEVESALLPRVFDQVDGAVINGNYAIMA--GLSARRDGLAVEP-DASAYANVLVVKRGNEADARVQAVLRAL- 219 (241)
T ss_dssp CTTCCEEEEECGGGHHHHGGGSSEEEECHHHHHHT--TCCTTTTCSEECS-CGGGGCEEEEEETTCTTCHHHHHHHHHH-
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHH--CCCCCCCEEEECC-CCCCEEEEEEECCHHHCCHHHHHHHHHH-
T ss_conf 43445425744767777427775799646489985--5887667799637-8986379999834010989999999997-
Q ss_pred HHHHCCHH-HHHHHHHCCCCCC
Q ss_conf 99979859-9999876788877
Q gi|254781112|r 246 AIHLDGTY-KKIFDRYFDKNII 266 (274)
Q Consensus 246 ~l~~~G~~-~~I~~kw~g~d~~ 266 (274)
.+.+. +-|.++|=|..+.
T Consensus 220 ---~~~ev~~~I~~~~~g~~~~ 238 (241)
T 1xs5_A 220 ---CGGRVRTYLKERYKGGEVA 238 (241)
T ss_dssp ---TSHHHHHHHHHHCTTSSSE
T ss_pred ---CCHHHHHHHHHHCCCCEEE
T ss_conf ---7999999999877998672