HHsearch results for GI: 254781112 and protein with PDBid: 1yae_A
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.97 E-value=1.1e-32 Score=220.59 Aligned_cols=223 Identities=18% Similarity=0.212 Sum_probs=174.9
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECC-----CCCEEEEEEEEHHHHHHHCCCCCCCCC-------------CCHHHHHHHH
Q ss_conf 8858958999628998724870469-----984889885216789976299855566-------------8988988643
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDG-----RGELTGFDIDLIKEVAHRLNLKVEFFE-------------TAVSGLITGL 98 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~-----~g~~~G~~~dl~~~i~~~lg~~~~~~~-------------~~~~~~~~~l 98 (274)
..++++|+||+ ..+|||.|.+.++ +++++||++||+++|+++||++++|+. .+|++++..|
T Consensus 9 ~~~~~t~~v~t-~~~pP~~~~~~~~~~~~~n~~~~Gf~vDl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 9 SLSNRSLIVTT-ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp TTCSCEEEEEE-CCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred CCCCCEEEEEE-CCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 23688899998-24599678816998767898668878999999999829977999905775453233678889987432
Q ss_pred HCCCCCCCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC------------------------CCCCCCCCCCCC--
Q ss_conf 103221100-00367567542002333222222222111222------------------------211111233432--
Q gi|254781112|r 99 DTNRYDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ------------------------DIRSFKDLTDKT-- 151 (274)
Q Consensus 99 ~~g~~D~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~------------------------~~~~~~dL~g~~-- 151 (274)
++|++|+++ ++++|+||++.++||.||+..+..+++|+++. .+++++||.+++
T Consensus 88 ~~g~~Di~i~~~sit~eR~~~v~FS~PY~~~~~~lvv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~s~~dl~~~~~~ 167 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLAKQTKI 167 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------CCSHHHHHTCSSS
T ss_pred CCCEEEEEEECCEECHHHHHCCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCHHHHCCCEEE
T ss_conf 24406599864585177741056477746304799999898777540666277356668732035665897995898369
Q ss_pred -EEEECCCHHHHHHHCCC-------------CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECC
Q ss_conf -02310101223320134-------------5421336855777755443210036655899999984587667326236
Q gi|254781112|r 152 -VAQILGTDLSRFAKELK-------------SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIAD 217 (274)
Q Consensus 152 -V~~~~g~~~~~~l~~~~-------------~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (274)
+++..|+....+..+.. .....+....+....+..++.|+++.+.....+...+.. .+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~d~~~~~~~~~~~~----~~~~~~ 243 (312)
T 1yae_A 168 EYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNC----NLTQIG 243 (312)
T ss_dssp EEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHTTCT----TEEEES
T ss_pred EEEEEECEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCC----CEEEEC
T ss_conf 9978812009998765101468899987630443121145688999971898599913899999984499----669804
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 776877079998189989999999999999979859999987678887
Q gi|254781112|r 218 RMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 218 ~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274)
.+....+++++++|+++ |++.||++|.+|+++|++++|++|||+.+.
T Consensus 244 ~~~~~~~~~~a~~K~s~-L~~~in~aL~~l~~~G~~~~l~~KWf~~~~ 290 (312)
T 1yae_A 244 GLIDSKGYGVGTPMGSP-YRDKITIAILQLQEEGKLHMMKEKWWRGNG 290 (312)
T ss_dssp SCSSCEEEEEEEETTCS-SHHHHHHHHHHHHHHTHHHHHHHHHHCCSC
T ss_pred CCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 44677328999928809-999999999999978989999998679999