HHsearch results for GI: 254781112 and protein with PDBid: 2a5s_A
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=99.98 E-value=2e-32 Score=218.87 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=162.2
Q ss_pred CCEEEEEEEEHHHHHHHCCCCCCCCCCC-----------HHHHHHHHHCCCCCCC-HHCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 8488988521678997629985556689-----------8898864310322110-000367567542002333222222
Q gi|254781112|r 63 GELTGFDIDLIKEVAHRLNLKVEFFETA-----------VSGLITGLDTNRYDVL-VNVAITPERQKKYDFSIPYIAHRV 130 (274)
Q Consensus 63 g~~~G~~~dl~~~i~~~lg~~~~~~~~~-----------~~~~~~~l~~g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~ 130 (274)
+.++||++||+++|++++|++++++.++ |++++.+|.+|++|++ .++++|++|++.++||.||+..+.
T Consensus 55 ~~~~G~~iDl~~~ia~~lg~~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~tit~eR~~~vdFs~Py~~~~~ 134 (284)
T 2a5s_A 55 KCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGI 134 (284)
T ss_dssp EEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECE
T ss_pred CCEEEEHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCE
T ss_conf 76389729999999998499779999358765765788889999766388589999588079999954827776246767
Q ss_pred CCCCCCCCCCCCCCCCCC---------CCCEEEECCCHHHHHHHCCC------CCCEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 222111222211111233---------43202310101223320134------542133685577775544321003665
Q gi|254781112|r 131 LLVVRSDQQDIRSFKDLT---------DKTVAQILGTDLSRFAKELK------SHLVFSHNFEQSLQLLLSKRTDATMIP 195 (274)
Q Consensus 131 ~~~~~~~~~~~~~~~dL~---------g~~V~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~l~~grvD~~~~~ 195 (274)
.+++++++. +...+|++ +.++|++.|+..+.++++.- .....+.+.++++++|.+||+|+++.+
T Consensus 135 ~ilv~k~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 135 SVMVSRGTQ-VTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp EEEEETTCC-CCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred EEEEECCCC-CCCHHHHHCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCEEECC
T ss_conf 789867986-6663565326703315661899983754999999765543126798248999999999986998789645
Q ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 58999999845876673262367768770799981899899999999999999798599999876788
Q gi|254781112|r 196 DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
...+.+++.+.+................+++++++|+++ |++.||++|.+|+++|++++|++||||-
T Consensus 214 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~gia~~k~s~-l~~~in~ai~~l~~~G~~~~l~~KW~~~ 280 (284)
T 2a5s_A 214 AAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLTG 280 (284)
T ss_dssp HHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCT-THHHHHHHHHHHHHHTHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 999999998589985899358876576069999818839-9999999999999698999999735569