HHsearch results for GI: 254781112 and protein with PDBid: 2a5s_A

>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=99.98  E-value=2e-32  Score=218.87  Aligned_cols=199  Identities=16%  Similarity=0.207  Sum_probs=162.2

Q ss_pred             CCEEEEEEEEHHHHHHHCCCCCCCCCCC-----------HHHHHHHHHCCCCCCC-HHCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf             8488988521678997629985556689-----------8898864310322110-000367567542002333222222
Q gi|254781112|r   63 GELTGFDIDLIKEVAHRLNLKVEFFETA-----------VSGLITGLDTNRYDVL-VNVAITPERQKKYDFSIPYIAHRV  130 (274)
Q Consensus        63 g~~~G~~~dl~~~i~~~lg~~~~~~~~~-----------~~~~~~~l~~g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~  130 (274)
                      +.++||++||+++|++++|++++++.++           |++++.+|.+|++|++ .++++|++|++.++||.||+..+.
T Consensus        55 ~~~~G~~iDl~~~ia~~lg~~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~tit~eR~~~vdFs~Py~~~~~  134 (284)
T 2a5s_A           55 KCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGI  134 (284)
T ss_dssp             EEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECE
T ss_pred             CCEEEEHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCE
T ss_conf             76389729999999998499779999358765765788889999766388589999588079999954827776246767


Q ss_pred             CCCCCCCCCCCCCCCCCC---------CCCEEEECCCHHHHHHHCCC------CCCEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf             222111222211111233---------43202310101223320134------542133685577775544321003665
Q gi|254781112|r  131 LLVVRSDQQDIRSFKDLT---------DKTVAQILGTDLSRFAKELK------SHLVFSHNFEQSLQLLLSKRTDATMIP  195 (274)
Q Consensus       131 ~~~~~~~~~~~~~~~dL~---------g~~V~~~~g~~~~~~l~~~~------~~~~~~~~~~~~~~~l~~grvD~~~~~  195 (274)
                      .+++++++. +...+|++         +.++|++.|+..+.++++.-      .....+.+.++++++|.+||+|+++.+
T Consensus       135 ~ilv~k~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~G~vDa~i~d  213 (284)
T 2a5s_A          135 SVMVSRGTQ-VTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYD  213 (284)
T ss_dssp             EEEEETTCC-CCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred             EEEEECCCC-CCCHHHHHCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCEEECC
T ss_conf             789867986-6663565326703315661899983754999999765543126798248999999999986998789645


Q ss_pred             HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf             58999999845876673262367768770799981899899999999999999798599999876788
Q gi|254781112|r  196 DIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDK  263 (274)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~  263 (274)
                      ...+.+++.+.+................+++++++|+++ |++.||++|.+|+++|++++|++||||-
T Consensus       214 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~gia~~k~s~-l~~~in~ai~~l~~~G~~~~l~~KW~~~  280 (284)
T 2a5s_A          214 AAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLTG  280 (284)
T ss_dssp             HHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCT-THHHHHHHHHHHHHHTHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             999999998589985899358876576069999818839-9999999999999698999999735569