HHsearch results for GI: 254781112 and protein with PDBid: 2f5x_A
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.21 E-value=0.026 Score=32.66 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=105.5
Q ss_pred HHHHHHCCCCCCCCCCCHHH---HHHHHHCCCCCC----CH--HCCCCHH---HHHHH---CCC--CCCCCCCCCCCCCC
Q ss_conf 78997629985556689889---886431032211----00--0036756---75420---023--33222222222111
Q gi|254781112|r 74 KEVAHRLNLKVEFFETAVSG---LITGLDTNRYDV----LV--NVAITPE---RQKKY---DFS--IPYIAHRVLLVVRS 136 (274)
Q Consensus 74 ~~i~~~lg~~~~~~~~~~~~---~~~~l~~g~~D~----~~--~~~~t~e---R~~~~---~fs--~p~~~~~~~~~~~~ 136 (274)
+.+.+.+|.++..+..|=.+ ....+.+..-|. +. +....+. ....+ +|. ......+.++++++
T Consensus 40 ~~l~k~lg~~v~V~N~pGagG~~g~~~~~~~~~Dg~t~~~~~~~~~~~~~l~~~~~~~~~~df~~i~~~~~~~~~~~v~~ 119 (312)
T 2f5x_A 40 ESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARG 119 (312)
T ss_dssp HHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSEEEEEEEEEEEEEEEECT
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCEEEEECC
T ss_conf 99999869987999789821599999999569999815652155344520015788884886330010004756898679
Q ss_pred CCCCCCCCCCCCC--------CCEEEE-CCCHHH----HHHHCC--CCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 2222111112334--------320231-010122----332013--4542133685577775544321003665589999
Q gi|254781112|r 137 DQQDIRSFKDLTD--------KTVAQI-LGTDLS----RFAKEL--KSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFN 201 (274)
Q Consensus 137 ~~~~~~~~~dL~g--------~~V~~~-~g~~~~----~~l~~~--~~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~ 201 (274)
++ .+++++||.. .+++.. .|+... .+.+.. +.+.+.|....+.+..|..|++|+.+........
T Consensus 120 ~s-~~~t~~dli~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~~~G~~~~~V~y~G~~~~~~al~~G~vd~~~~~~~~~~~ 198 (312)
T 2f5x_A 120 DF-PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQ 198 (312)
T ss_dssp TC-SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHH
T ss_pred CC-CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 88-40337899998733877614643789948899998999863984441356771777777536831312357300144
Q ss_pred HHHHCCCCC---------C---CEEECCC-----CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 998458766---------7---3262367-----76877079998189-9899999999999999798599999876788
Q gi|254781112|r 202 FLERRPHDG---------N---LFKIADR-----MKDNSAVAFMMRKG-NNKLTRSINEILCAIHLDGTYKKIFDRYFDK 263 (274)
Q Consensus 202 ~~~~~~~~~---------~---~~~~~~~-----~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~ 263 (274)
+.+.-.... . .++...+ .......++..+++ .++.++.+.+++.++.+|.++.+-.++ .|.
T Consensus 199 ~~~~g~l~~La~~~~~r~~~~pdvPT~~E~G~~~~~~~~~~g~~ap~gtp~~~v~~l~~a~~~~~~~pe~~~~~~~-~g~ 277 (312)
T 2f5x_A 199 QITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQ-LGA 277 (312)
T ss_dssp HHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH-TTC
T ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH-CCC
T ss_conf 5534675499982776554368999806527887503552025326779999999999999999739999999997-699
Q ss_pred CC
Q ss_conf 87
Q gi|254781112|r 264 NI 265 (274)
Q Consensus 264 d~ 265 (274)
++
T Consensus 278 ~~ 279 (312)
T 2f5x_A 278 EV 279 (312)
T ss_dssp EE
T ss_pred CC
T ss_conf 61