HHsearch results for GI: 254781112 and protein with PDBid: 2g29_A
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=97.34 E-value=0.00092 Score=41.62 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=105.9
Q ss_pred HCCCEEEEECC--CCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCC-CCCCCC-CCHHHHHHHH----HCCCCCCCHH--
Q ss_conf 58958999628--998724870469984889885216789976299-855566-8988988643----1032211000--
Q gi|254781112|r 39 DQSALRVGTDG--IYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNL-KVEFFE-TAVSGLITGL----DTNRYDVLVN-- 108 (274)
Q Consensus 39 ~~~~l~v~~~~--~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~-~~~~~~-~~~~~~~~~l----~~g~~D~~~~-- 108 (274)
++.+||||.-+ +..|+. +---+-.+++.|+ +++++. ..|....+.| .+|++|+...
T Consensus 31 E~~~lriGyiPl~d~APl~--------------VA~ekGfF~~~GL~dVel~~~~s~~~~~d~l~~g~a~G~lD~a~~~~ 96 (417)
T 2g29_A 31 EVTTAKLGFIALTDAAPLI--------------IAKEKGFYAKYGMPDVEVLKQASWGTTRDNLVLGSASGGIDGAHILT 96 (417)
T ss_dssp SCSCCEEEECSSGGGHHHH--------------HHHHTTHHHHTTCTTCEEEECSCHHHHHHHHHHCGGGTSCSEEEEET
T ss_pred CCCEEEEEEEECCCHHHHH--------------HHHHCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 6743899976650539999--------------99977958775997468996578277999999764246614000251
Q ss_pred -CCCCH-----HHHHHHCC--CCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCEEEECCC-HHH----HHHH
Q ss_conf -03675-----67542002--33322222222211----------12222111112334320231010-122----3320
Q gi|254781112|r 109 -VAITP-----ERQKKYDF--SIPYIAHRVLLVVR----------SDQQDIRSFKDLTDKTVAQILGT-DLS----RFAK 165 (274)
Q Consensus 109 -~~~t~-----eR~~~~~f--s~p~~~~~~~~~~~----------~~~~~~~~~~dL~g~~V~~~~g~-~~~----~~l~ 165 (274)
+.... .+.....+ ..........+.+. .....+++++||+|+|||+.... ... .+++
T Consensus 97 ~~~~a~~lg~~~~~~~~~~~~~~~~~~~g~~I~~s~~~~~~~~~~~~~~~i~s~~dLkGk~igv~~~~s~~~~~lr~~L~ 176 (417)
T 2g29_A 97 PMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDAAPLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLA 176 (417)
T ss_dssp HHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGGGGGCCCSCCTTHHHHHHTSSSCEEEESSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 16899998776437898889998736687479983232000344565432109888399989997898649999999999
Q ss_pred CCCCC----C-EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCC-CEEEEEEC----CCHH
Q ss_conf 13454----2-1336855777755443210036655899999984587667326236776877-07999818----9989
Q gi|254781112|r 166 ELKSH----L-VFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNS-AVAFMMRK----GNNK 235 (274)
Q Consensus 166 ~~~~~----~-~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k----~~~~ 235 (274)
+.+.+ + +..-.+.+....|.+|++|+++..+.-......+ ... ............. ...+++++ +||+
T Consensus 177 ~~Gldp~~DV~iv~~~p~~~~~aL~~G~iDa~~~~eP~~~~a~~~-g~g-~~~~~~~di~~~~p~~vl~~~~~~~~~nPe 254 (417)
T 2g29_A 177 AGGMEPGKDFSTIVVPPAQMVANVKVNAMESFCVGEPWPLQTVNQ-GVG-YQALTTGQLWKDHPEKAFGMRADWVDQNPK 254 (417)
T ss_dssp HTTCCBTTTBEEEECCGGGHHHHHHTTSCSEEEEETTHHHHHHHH-TSC-EEEEEGGGTBTTCBCEEEEEEHHHHHHCHH
T ss_pred HCCCCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHC-CCC-EEEEECHHHCCCCCCEEEEECHHHHHHCHH
T ss_conf 669986664389855779999999668703899544499999864-885-898510463289863699964898853989
Q ss_pred HHHHHHHHHHHHH---HC----CHHHHHHH--HHCCCCC
Q ss_conf 9999999999999---79----85999998--7678887
Q gi|254781112|r 236 LTRSINEILCAIH---LD----GTYKKIFD--RYFDKNI 265 (274)
Q Consensus 236 L~~~in~~l~~l~---~~----G~~~~I~~--kw~g~d~ 265 (274)
....+-+++.+-. ++ -+..+|+. +|++.+.
T Consensus 255 ~v~afv~Al~~A~~w~~~~~n~~eaa~ila~~~yl~~p~ 293 (417)
T 2g29_A 255 AAKALLMAVMEAQQWCDQAENKEEMCQILSKREWFKVPF 293 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHSTTTTCCCG
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCH
T ss_conf 999999999999999837659999999856503279599