HHsearch results for GI: 254781112 and protein with PDBid: 2hxw_A
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=96.89 E-value=0.0017 Score=39.90 Aligned_cols=181 Identities=15% Similarity=0.235 Sum_probs=98.1
Q ss_pred EEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCC--CHH-HHH---HHCC--CCCCCCCCCCCCCCCCCC-CC
Q ss_conf 21678997629985556689889886431032211000036--756-754---2002--333222222222111222-21
Q gi|254781112|r 71 DLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAI--TPE-RQK---KYDF--SIPYIAHRVLLVVRSDQQ-DI 141 (274)
Q Consensus 71 dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~--t~e-R~~---~~~f--s~p~~~~~~~~~~~~~~~-~~ 141 (274)
+|++..-++.|++|+++..+.......+++| .|++...+. ..+ ++. .+.. ..++.....+++++++.+ .+
T Consensus 17 ~l~~~Fek~tGi~V~~~~~~s~~l~~~i~~~-aDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~ 95 (237)
T 2hxw_A 17 DIANKYSEKTGVKVNVNFGPQATWFEKAKKD-ADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKI 95 (237)
T ss_dssp HHHHHHHHHHCCCEEEEESSHHHHHHHHHHH-CSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEEEESTTCTTCC
T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCCCC
T ss_conf 9999998801975999977829999997659-999998460478999886104677772799994329999979997676
Q ss_pred CCCCCCCCC--CEEEECCC------H---HHHHH---------HCCC-CCCEEECCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 111123343--20231010------1---22332---------0134-54213368557777554432100366558999
Q gi|254781112|r 142 RSFKDLTDK--TVAQILGT------D---LSRFA---------KELK-SHLVFSHNFEQSLQLLLSKRTDATMIPDIPFF 200 (274)
Q Consensus 142 ~~~~dL~g~--~V~~~~g~------~---~~~~l---------~~~~-~~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~ 200 (274)
++++||... ++.+..+. . +.... .... ..+....+..+...++.+|++|+.+.....
T Consensus 96 ~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~d~~i~~~~~-- 173 (237)
T 2hxw_A 96 KGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDW-- 173 (237)
T ss_dssp CSHHHHHHSCCCEEECCCTTSSCCTTTTHHHHHHHTTCCHHHHHHHHHTEEEECCCCTTC--CTTTTTCSEEEEEHHH--
T ss_pred CCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCHHHHHHHHHHCCCEEEEEEHHH--
T ss_conf 523566420310665136887322279999998622220889997435705865888999999970777099874454--
Q ss_pred HHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999845876673262367768770799981899899999999999999798599999876
Q gi|254781112|r 201 NFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRY 260 (274)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw 260 (274)
....+.....+..........++++.-...+++.... +-+...|.+-++|++||
T Consensus 174 --a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~A~~----Fi~fl~S~e~q~i~~~~ 227 (237)
T 2hxw_A 174 --SKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQD----FIAYLSSKEAKEIFKKY 227 (237)
T ss_dssp --HHHSTTSSEEEECCTTTCCEEEEEEEECTTCCHHHHH----HHHHTTSHHHHHHHHHT
T ss_pred --HHCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHH----HHHHHCCHHHHHHHHHC
T ss_conf --5326660289966998525877999958999499999----99997899999999985