HHsearch results for GI: 254781112 and protein with PDBid: 2o1m_A
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis}
Probab=100.00 E-value=2.3e-42 Score=280.31 Aligned_cols=229 Identities=25% Similarity=0.346 Sum_probs=191.7
Q ss_pred CHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCC
Q ss_conf 788788589589996289987248704699848898852167899762-998555668988988643103221100-003
Q gi|254781112|r 33 YPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVA 110 (274)
Q Consensus 33 ~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~ 110 (274)
..+..++.++|+||++.+||||+|. |++|++.||++|+++++++++ |++++|++++|++++..|++|++|+++ +++
T Consensus 8 ~~a~~~~~~~i~V~~~~~~pP~~~~--~~~g~~~G~~vDl~~~ia~~l~g~~v~~~~~~~~~~~~~l~~g~~D~i~~~~~ 85 (258)
T 2o1m_A 8 TGAGQKKVQTITVGTGTQFPNICFI--DEKGDLTGYDVELIKELDKRLPHYKFTFKTMEFSNLLVSLGQHKVDIVAHQME 85 (258)
T ss_dssp ------CCEEEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSSSEEEEEEC
T ss_pred CCCCCCCCCEEEEEECCCCCCEEEE--CCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCC
T ss_conf 6554566998999989997980699--99996887599999999987289858999789999999997799888963476
Q ss_pred CCHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCC-------CCCEEECCHHHHHH
Q ss_conf 6756754200233322222-222211122221111123343202310101223320134-------54213368557777
Q gi|254781112|r 111 ITPERQKKYDFSIPYIAHR-VLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELK-------SHLVFSHNFEQSLQ 182 (274)
Q Consensus 111 ~t~eR~~~~~fs~p~~~~~-~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~ 182 (274)
+|++|++.+.||.|++... ..++++++...+++++||+|++||+..|+.+...+++.. ..+..+.+.+++++
T Consensus 86 ~~~er~~~~~fs~~~~~~~~~~~~~~~~~~~i~~~~dL~gk~igv~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (258)
T 2o1m_A 86 KSKEREKKFLFNKVAYNHFPLKITVLQNNDTIRGIEDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGANETAN 165 (258)
T ss_dssp CCHHHHHHCEECSSCCEEEEEEEEEETTCCSCSSGGGCTTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSSTTHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHH
T ss_conf 78788753136754223554289985136765515445798898707874999999999971887420103688999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 55443210036655899999984587667326236776877079998189989999999999999979859999987678
Q gi|254781112|r 183 LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD 262 (274)
Q Consensus 183 ~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g 262 (274)
+|.+||+|+++.+.....+..++.+.. ..+...+....+++++++|++++|+..||++|++|++||++++|++||||
T Consensus 166 ~L~~grvD~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~~~~dG~~~~I~~Kw~g 242 (258)
T 2o1m_A 166 QLKSGRADATISTPFAVDFQNKTSTIK---EKTVGNVLSNAKVYFMFNKNEQTLSDDIDKALQEIIDDGTLKRLSLKWLG 242 (258)
T ss_dssp HHHHTSCSBEEECHHHHHHHHHHCSSC---EEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHCCCEEEEEECHHHHHHHHHHCCCC---EEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf 986595469991699999998527886---58815667775189999599999999999999999968599999998779
Q ss_pred CCCC
Q ss_conf 8877
Q gi|254781112|r 263 KNII 266 (274)
Q Consensus 263 ~d~~ 266 (274)
+|+.
T Consensus 243 ~d~~ 246 (258)
T 2o1m_A 243 DDYS 246 (258)
T ss_dssp TTC-
T ss_pred CCCC
T ss_conf 9888