HHsearch results for GI: 254781112 and protein with PDBid: 2o1m_A

>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis}
Probab=100.00  E-value=2.3e-42  Score=280.31  Aligned_cols=229  Identities=25%  Similarity=0.346  Sum_probs=191.7

Q ss_pred             CHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCH-HCC
Q ss_conf             788788589589996289987248704699848898852167899762-998555668988988643103221100-003
Q gi|254781112|r   33 YPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLV-NVA  110 (274)
Q Consensus        33 ~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~  110 (274)
                      ..+..++.++|+||++.+||||+|.  |++|++.||++|+++++++++ |++++|++++|++++..|++|++|+++ +++
T Consensus         8 ~~a~~~~~~~i~V~~~~~~pP~~~~--~~~g~~~G~~vDl~~~ia~~l~g~~v~~~~~~~~~~~~~l~~g~~D~i~~~~~   85 (258)
T 2o1m_A            8 TGAGQKKVQTITVGTGTQFPNICFI--DEKGDLTGYDVELIKELDKRLPHYKFTFKTMEFSNLLVSLGQHKVDIVAHQME   85 (258)
T ss_dssp             ------CCEEEEEEECSEETTTEEE--CTTSCEESHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSSSEEEEEEC
T ss_pred             CCCCCCCCCEEEEEECCCCCCEEEE--CCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCC
T ss_conf             6554566998999989997980699--99996887599999999987289858999789999999997799888963476


Q ss_pred             CCHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCC-------CCCEEECCHHHHHH
Q ss_conf             6756754200233322222-222211122221111123343202310101223320134-------54213368557777
Q gi|254781112|r  111 ITPERQKKYDFSIPYIAHR-VLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELK-------SHLVFSHNFEQSLQ  182 (274)
Q Consensus       111 ~t~eR~~~~~fs~p~~~~~-~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~  182 (274)
                      +|++|++.+.||.|++... ..++++++...+++++||+|++||+..|+.+...+++..       ..+..+.+.+++++
T Consensus        86 ~~~er~~~~~fs~~~~~~~~~~~~~~~~~~~i~~~~dL~gk~igv~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (258)
T 2o1m_A           86 KSKEREKKFLFNKVAYNHFPLKITVLQNNDTIRGIEDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGANETAN  165 (258)
T ss_dssp             CCHHHHHHCEECSSCCEEEEEEEEEETTCCSCSSGGGCTTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSSTTHHHH
T ss_pred             CCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHH
T ss_conf             78788753136754223554289985136765515445798898707874999999999971887420103688999999


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
Q ss_conf             55443210036655899999984587667326236776877079998189989999999999999979859999987678
Q gi|254781112|r  183 LLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFD  262 (274)
Q Consensus       183 ~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g  262 (274)
                      +|.+||+|+++.+.....+..++.+..   ..+...+....+++++++|++++|+..||++|++|++||++++|++||||
T Consensus       166 ~L~~grvD~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~~~~dG~~~~I~~Kw~g  242 (258)
T 2o1m_A          166 QLKSGRADATISTPFAVDFQNKTSTIK---EKTVGNVLSNAKVYFMFNKNEQTLSDDIDKALQEIIDDGTLKRLSLKWLG  242 (258)
T ss_dssp             HHHHTSCSBEEECHHHHHHHHHHCSSC---EEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred             HHHCCCEEEEEECHHHHHHHHHHCCCC---EEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf             986595469991699999998527886---58815667775189999599999999999999999968599999998779


Q ss_pred             CCCC
Q ss_conf             8877
Q gi|254781112|r  263 KNII  266 (274)
Q Consensus       263 ~d~~  266 (274)
                      +|+.
T Consensus       243 ~d~~  246 (258)
T 2o1m_A          243 DDYS  246 (258)
T ss_dssp             TTC-
T ss_pred             CCCC
T ss_conf             9888