HHsearch results for GI: 254781112 and protein with PDBid: 2pfz_A

>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=97.67  E-value=0.00036  Score=44.13  Aligned_cols=170  Identities=12%  Similarity=0.117  Sum_probs=99.6

Q ss_pred             EEHHHHHHHCC--CCCCCCC----CCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHH-CCCCCCCCC--------------
Q ss_conf             21678997629--9855566----8988988643103221100-003675675420-023332222--------------
Q gi|254781112|r   71 DLIKEVAHRLN--LKVEFFE----TAVSGLITGLDTNRYDVLV-NVAITPERQKKY-DFSIPYIAH--------------  128 (274)
Q Consensus        71 dl~~~i~~~lg--~~~~~~~----~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~-~fs~p~~~~--------------  128 (274)
                      +.++.+.++.|  +++++.+    .+...+++.+++|.+|+.. +..+.+.+...+ .|+.|++..              
T Consensus        21 ~fa~~V~e~t~G~v~i~i~~~g~L~~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~~~~  100 (301)
T 2pfz_A           21 QFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKP  100 (301)
T ss_dssp             HHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             99999998759919999966986788699999997698771000224645417540366357676876889998630489


Q ss_pred             --------------------CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf             --------------------222221112222111112334320231010122332013454213368557777554432
Q gi|254781112|r  129 --------------------RVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKR  188 (274)
Q Consensus       129 --------------------~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~gr  188 (274)
                                          ...+..   ...+++++||+|++|.+. |.....+++..+...+..+ ..+.+.+|.+|.
T Consensus       101 ~~~~~~~~~~~~~L~~~~~~~~~~~~---~~pi~~~~DlkG~kiR~~-~~~~~~~~~~~Ga~pv~~~-~~ev~~aLq~G~  175 (301)
T 2pfz_A          101 FLEKKLASQGMMLLYSVAWPPQGIFA---NRDIKQVSDMKGLKWRAY-SPVTAKIAELVGAQPVTVQ-QAELAQAMATGV  175 (301)
T ss_dssp             HHHHHHHTTTEEEEEEEECCCCEEEE---SSCCSSGGGGTTCEEEES-SHHHHHHHHHHTCEEEECC-GGGHHHHHHTTS
T ss_pred             HHHHHHHHCCEEEEEECCCCCEEEEC---CCCCCCHHHHCCCEEEEC-CHHHHHHHHHCCCCCCCCC-CHHHHHHHHHCC
T ss_conf             99987642325798752776222242---889999588679858716-8249999998188744565-406899998253


Q ss_pred             HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHHH
Q ss_conf             10036655899999984587667326236776877079998189-----98999999999999997
Q gi|254781112|r  189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAIHL  249 (274)
Q Consensus       189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~~  249 (274)
                      +|+...+.......  ....  ................+.++++     +++.+..|.++..+..+
T Consensus       176 vDg~~~~~~~~~~~--~~~e--~~~~~~~~~~~~~~~~~~~n~~~~~~L~~~~q~~i~~a~~~~~~  237 (301)
T 2pfz_A          176 IDSYMSSGSTGFDT--KTYE--YIKKFYDTEAWLPKNAVLVNKKAFDALDPATQQALKKAGAQAEE  237 (301)
T ss_dssp             CSEEEECHHHHHHT--TGGG--TCCEEECCCCCCCEEEEEEEHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHCCCHHHHHHC--CCCE--EEEEEEECCCCCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             10200570444311--5614--42048735874641443506999963999999999999999999