HHsearch results for GI: 254781112 and protein with PDBid: 2pfz_A
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=97.67 E-value=0.00036 Score=44.13 Aligned_cols=170 Identities=12% Similarity=0.117 Sum_probs=99.6
Q ss_pred EEHHHHHHHCC--CCCCCCC----CCHHHHHHHHHCCCCCCCH-HCCCCHHHHHHH-CCCCCCCCC--------------
Q ss_conf 21678997629--9855566----8988988643103221100-003675675420-023332222--------------
Q gi|254781112|r 71 DLIKEVAHRLN--LKVEFFE----TAVSGLITGLDTNRYDVLV-NVAITPERQKKY-DFSIPYIAH-------------- 128 (274)
Q Consensus 71 dl~~~i~~~lg--~~~~~~~----~~~~~~~~~l~~g~~D~~~-~~~~t~eR~~~~-~fs~p~~~~-------------- 128 (274)
+.++.+.++.| +++++.+ .+...+++.+++|.+|+.. +..+.+.+...+ .|+.|++..
T Consensus 21 ~fa~~V~e~t~G~v~i~i~~~g~L~~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~~~~ 100 (301)
T 2pfz_A 21 QFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKP 100 (301)
T ss_dssp HHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99999998759919999966986788699999997698771000224645417540366357676876889998630489
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf --------------------222221112222111112334320231010122332013454213368557777554432
Q gi|254781112|r 129 --------------------RVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 129 --------------------~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~gr 188 (274)
...+.. ...+++++||+|++|.+. |.....+++..+...+..+ ..+.+.+|.+|.
T Consensus 101 ~~~~~~~~~~~~~L~~~~~~~~~~~~---~~pi~~~~DlkG~kiR~~-~~~~~~~~~~~Ga~pv~~~-~~ev~~aLq~G~ 175 (301)
T 2pfz_A 101 FLEKKLASQGMMLLYSVAWPPQGIFA---NRDIKQVSDMKGLKWRAY-SPVTAKIAELVGAQPVTVQ-QAELAQAMATGV 175 (301)
T ss_dssp HHHHHHHTTTEEEEEEEECCCCEEEE---SSCCSSGGGGTTCEEEES-SHHHHHHHHHHTCEEEECC-GGGHHHHHHTTS
T ss_pred HHHHHHHHCCEEEEEECCCCCEEEEC---CCCCCCHHHHCCCEEEEC-CHHHHHHHHHCCCCCCCCC-CHHHHHHHHHCC
T ss_conf 99987642325798752776222242---889999588679858716-8249999998188744565-406899998253
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECC-----CHHHHHHHHHHHHHHHH
Q ss_conf 10036655899999984587667326236776877079998189-----98999999999999997
Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKG-----NNKLTRSINEILCAIHL 249 (274)
Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~~L~~~in~~l~~l~~ 249 (274)
+|+...+....... .... ................+.++++ +++.+..|.++..+..+
T Consensus 176 vDg~~~~~~~~~~~--~~~e--~~~~~~~~~~~~~~~~~~~n~~~~~~L~~~~q~~i~~a~~~~~~ 237 (301)
T 2pfz_A 176 IDSYMSSGSTGFDT--KTYE--YIKKFYDTEAWLPKNAVLVNKKAFDALDPATQQALKKAGAQAEE 237 (301)
T ss_dssp CSEEEECHHHHHHT--TGGG--TCCEEECCCCCCCEEEEEEEHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHCCCHHHHHHC--CCCE--EEEEEEECCCCCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 10200570444311--5614--42048735874641443506999963999999999999999999