HHsearch results for GI: 254781112 and protein with PDBid: 2pvu_A
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=100.00 E-value=3.8e-41 Score=272.84 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=193.3
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHH
Q ss_conf 88589589996289987248704699848898852167899762998555668988988643103221100-00367567
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPER 115 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR 115 (274)
..++++|+||++++||||+|.+ +|+++||++|+++++++++|++++|+.++|.+++..|++|++|+++ ++++|++|
T Consensus 38 ~~~~~~l~Vg~~~~~~P~~~~~---~G~~~G~~vDl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~R 114 (272)
T 2pvu_A 38 GATKKKVVVGTDAAFAPFEYMQ---KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDER 114 (272)
T ss_dssp CCCCCCEEEEECCCBTTTBEEE---TTEEESHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHTSSSEECSSCBCCHHH
T ss_pred CCCCCEEEEEECCCCCCCEEEE---CCEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHH
T ss_conf 5558989999899878935856---9977881999999999980996599977989999999759966895145578777
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCC---CCCCEEECCHHHHHHHHHHHHHHCC
Q ss_conf 5420023332222222221112222111112334320231010122332013---4542133685577775544321003
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKEL---KSHLVFSHNFEQSLQLLLSKRTDAT 192 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~grvD~~ 192 (274)
++.+.||.||+..+..+++|+++ .+++.++|.|+++++..|+.++.++++. ..++..+.+..+++++|.+||+|++
T Consensus 115 ~~~~~~s~p~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~ 193 (272)
T 2pvu_A 115 KQSYDFSDPYFEATQVILVKQGS-PVKNALDLKGKTIGVQNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAV 193 (272)
T ss_dssp HTTEEECSCCEEECEEEEEETTC-CCCSGGGGTTSCEEEETTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEE
T ss_pred HCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEE
T ss_conf 41055674630563789974487-67885886798577625763999999873448734304208999999985981165
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 6655899999984587667326236776877079998189989999999999999979859999987678887
Q gi|254781112|r 193 MIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNI 265 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~ 265 (274)
+.+...+.+++++.+.................+++++++ +++|++.||++|.+|++||++++|++||||+|-
T Consensus 194 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~ln~al~~~~~dG~~~~I~~kyfG~dp 265 (272)
T 2pvu_A 194 ITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEP 265 (272)
T ss_dssp EEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEET-TCTTHHHHHHHHHHHHHTTHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 266598999998589987699516766676159999789-989999999999999969699999998679999