HHsearch results for GI: 254781112 and protein with PDBid: 2q88_A
>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=100.00 E-value=5.1e-39 Score=259.66 Aligned_cols=234 Identities=18% Similarity=0.281 Sum_probs=194.3
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCCCCH-HCCC
Q ss_conf 887885895899962899872487046998488988521678997629985556-68988988643103221100-0036
Q gi|254781112|r 34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF-ETAVSGLITGLDTNRYDVLV-NVAI 111 (274)
Q Consensus 34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~-~~~~~~~~~~l~~g~~D~~~-~~~~ 111 (274)
-..++++++||||+ .++|||+|. |+.|+++||++|+++++++++|++++++ ..+|.+++..|++|++|+++ ++++
T Consensus 6 l~~i~~~g~lrV~~-~~~pP~~~~--~~~G~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~ 82 (257)
T 2q88_A 6 LEELKEQGFARIAI-ANEPPFTAV--GADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFM 82 (257)
T ss_dssp HHHHHHHTEEEEEE-CCCTTTCEE--CTTCCEESHHHHHHHHHHHHTTCCEEEEEECCGGGHHHHHHTTSCSEECSCCBC
T ss_pred HHHHHCCCEEEEEE-CCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 99998299699998-689994479--999988878999999999993997799846999999999975998847764341
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCC-C---CCCCCCCCCCCEEEECCCHHHHHHHCC---CCCCEEECCHHHHHHHH
Q ss_conf 7567542002333222222222111222-2---111112334320231010122332013---45421336855777755
Q gi|254781112|r 112 TPERQKKYDFSIPYIAHRVLLVVRSDQQ-D---IRSFKDLTDKTVAQILGTDLSRFAKEL---KSHLVFSHNFEQSLQLL 184 (274)
Q Consensus 112 t~eR~~~~~fs~p~~~~~~~~~~~~~~~-~---~~~~~dL~g~~V~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l 184 (274)
|++|.+.+.||.||+.....++++++++ . +.++++++|++||+..|+.+..++.+. ..+++.+.+.++++++|
T Consensus 83 t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 162 (257)
T 2q88_A 83 KPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKML 162 (257)
T ss_dssp CHHHHTTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHH
T ss_pred CHHHCCHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
T ss_conf 54324310058661126731467536411333133454147856998358569999998189866223200167888998
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH-CCC
Q ss_conf 4432100366558999999845876673262367768770799981899899999999999999798599999876-788
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRY-FDK 263 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw-~g~ 263 (274)
.+||+|+++.+...+.+++.+.+..................+++++|++++|++.||++|.+|++||++++|++|| |+.
T Consensus 163 ~~GrvD~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~L~~~in~~l~~~~~~G~~~~i~~k~g~~~ 242 (257)
T 2q88_A 163 QDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSA 242 (257)
T ss_dssp HHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGTCCH
T ss_pred HCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 76964799965999999998479998699615667763116899889999999999999999996949999999868798
Q ss_pred CCCCCCC
Q ss_conf 8775689
Q gi|254781112|r 264 NIISSVP 270 (274)
Q Consensus 264 d~~~~~~ 270 (274)
+...++.
T Consensus 243 ~~~~~~~ 249 (257)
T 2q88_A 243 KAAMSTT 249 (257)
T ss_dssp HHHHTCC
T ss_pred CCCCCHH
T ss_conf 6577240