HHsearch results for GI: 254781112 and protein with PDBid: 2q88_A

>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=100.00  E-value=5.1e-39  Score=259.66  Aligned_cols=234  Identities=18%  Similarity=0.281  Sum_probs=194.3

Q ss_pred             HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCCCCH-HCCC
Q ss_conf             887885895899962899872487046998488988521678997629985556-68988988643103221100-0036
Q gi|254781112|r   34 PFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFF-ETAVSGLITGLDTNRYDVLV-NVAI  111 (274)
Q Consensus        34 ~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~-~~~~~~~~~~l~~g~~D~~~-~~~~  111 (274)
                      -..++++++||||+ .++|||+|.  |+.|+++||++|+++++++++|++++++ ..+|.+++..|++|++|+++ ++++
T Consensus         6 l~~i~~~g~lrV~~-~~~pP~~~~--~~~G~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~   82 (257)
T 2q88_A            6 LEELKEQGFARIAI-ANEPPFTAV--GADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFM   82 (257)
T ss_dssp             HHHHHHHTEEEEEE-CCCTTTCEE--CTTCCEESHHHHHHHHHHHHTTCCEEEEEECCGGGHHHHHHTTSCSEECSCCBC
T ss_pred             HHHHHCCCEEEEEE-CCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             99998299699998-689994479--999988878999999999993997799846999999999975998847764341


Q ss_pred             CHHHHHHHCCCCCCCCCCCCCCCCCCCC-C---CCCCCCCCCCCEEEECCCHHHHHHHCC---CCCCEEECCHHHHHHHH
Q ss_conf             7567542002333222222222111222-2---111112334320231010122332013---45421336855777755
Q gi|254781112|r  112 TPERQKKYDFSIPYIAHRVLLVVRSDQQ-D---IRSFKDLTDKTVAQILGTDLSRFAKEL---KSHLVFSHNFEQSLQLL  184 (274)
Q Consensus       112 t~eR~~~~~fs~p~~~~~~~~~~~~~~~-~---~~~~~dL~g~~V~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l  184 (274)
                      |++|.+.+.||.||+.....++++++++ .   +.++++++|++||+..|+.+..++.+.   ..+++.+.+.++++++|
T Consensus        83 t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  162 (257)
T 2q88_A           83 KPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKML  162 (257)
T ss_dssp             CHHHHTTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHH
T ss_pred             CHHHCCHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
T ss_conf             54324310058661126731467536411333133454147856998358569999998189866223200167888998


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH-CCC
Q ss_conf             4432100366558999999845876673262367768770799981899899999999999999798599999876-788
Q gi|254781112|r  185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRY-FDK  263 (274)
Q Consensus       185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw-~g~  263 (274)
                      .+||+|+++.+...+.+++.+.+..................+++++|++++|++.||++|.+|++||++++|++|| |+.
T Consensus       163 ~~GrvD~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~L~~~in~~l~~~~~~G~~~~i~~k~g~~~  242 (257)
T 2q88_A          163 QDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSA  242 (257)
T ss_dssp             HHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGTCCH
T ss_pred             HCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf             76964799965999999998479998699615667763116899889999999999999999996949999999868798


Q ss_pred             CCCCCCC
Q ss_conf             8775689
Q gi|254781112|r  264 NIISSVP  270 (274)
Q Consensus       264 d~~~~~~  270 (274)
                      +...++.
T Consensus       243 ~~~~~~~  249 (257)
T 2q88_A          243 KAAMSTT  249 (257)
T ss_dssp             HHHHTCC
T ss_pred             CCCCCHH
T ss_conf             6577240