HHsearch results for GI: 254781112 and protein with PDBid: 2qpq_A
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.88 E-value=0.006 Score=36.58 Aligned_cols=135 Identities=9% Similarity=0.055 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--------CCEEEE-CCCHHHH----HHHC--CCCCCEEECCHHHHHHHHHHHH
Q ss_conf 32222222221112222111112334--------320231-0101223----3201--3454213368557777554432
Q gi|254781112|r 124 PYIAHRVLLVVRSDQQDIRSFKDLTD--------KTVAQI-LGTDLSR----FAKE--LKSHLVFSHNFEQSLQLLLSKR 188 (274)
Q Consensus 124 p~~~~~~~~~~~~~~~~~~~~~dL~g--------~~V~~~-~g~~~~~----~l~~--~~~~~~~~~~~~~~~~~l~~gr 188 (274)
.....+.+++++++++ +++++||.. .++|.. .|+.... +.+. .+.+.+.|....+.+.+|..|+
T Consensus 98 ~~~~~~~~lvv~~ds~-~~t~~el~~~ak~~p~~~~~g~~g~g~~~~~~~~~~~~~~g~~~~~Vpy~G~~~~~~all~G~ 176 (301)
T 2qpq_A 98 NVAYVPSVFVVPAGSK-YKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQ 176 (301)
T ss_dssp EEEEEEEEEEEETTCS-CCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTS
T ss_pred EECCCCEEEEECCCCC-CCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCE
T ss_conf 3135656999737777-440267777643103234251378987999999999861456623661178588888875584
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCC------------CEEECC-----CCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHC
Q ss_conf 10036655899999984587667------------326236-----776877079998189-989999999999999979
Q gi|254781112|r 189 TDATMIPDIPFFNFLERRPHDGN------------LFKIAD-----RMKDNSAVAFMMRKG-NNKLTRSINEILCAIHLD 250 (274)
Q Consensus 189 vD~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~~~~k~-~~~L~~~in~~l~~l~~~ 250 (274)
+|+.+........++..-..... .++... ........++..+++ .++.++.+.+++.++.+|
T Consensus 177 vd~~~~~~~~~~~~i~~G~l~~La~~~~~R~~~~PdvPT~~E~G~~~~~~~~~~g~~ap~gtp~~~~~~l~~a~~~~~~~ 256 (301)
T 2qpq_A 177 IGLAVVTASSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQR 256 (301)
T ss_dssp SSCEEEEHHHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEECCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 45553467876644037856899996787686679999817858887458763212306999999999999999999729
Q ss_pred CHHHHHHHH
Q ss_conf 859999987
Q gi|254781112|r 251 GTYKKIFDR 259 (274)
Q Consensus 251 G~~~~I~~k 259 (274)
.++.+..++
T Consensus 257 ~~~~~~~~~ 265 (301)
T 2qpq_A 257 DDVQKKLAD 265 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999997