HHsearch results for GI: 254781112 and protein with PDBid: 2rin_A
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=96.23 E-value=0.0031 Score=38.36 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=105.5
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCC-C-CHH--
Q ss_conf 589589996289987248704699848898852167899762998555668988988643103221100003-6-756--
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVA-I-TPE-- 114 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~-~-t~e-- 114 (274)
+.++|+||. .+|. . + =+..+|+..+.+++|++|+.++.+..-+..+|.+|++|+..... . +.+
T Consensus 5 ~~~~V~ig~-~~w~-----~----~---~~~a~i~~~vLe~~Gy~Ve~~~~~~~~~~~al~~GdID~~~e~W~p~~~~~~ 71 (298)
T 2rin_A 5 SCGTVRFSD-VGWT-----D----I---TATTATATTILEALGYETDVKVLSVPVTYTSLKNKDIDVFLGNWMPTMEADI 71 (298)
T ss_dssp CTTEEEEEC-CSCH-----H----H---HHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHTSCCEEEEEEETTTHHHH
T ss_pred CCCCEEEEE-CCCC-----H----H---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 489769974-6976-----6----9---9999999999998699248986870999999987998088404664001667
Q ss_pred ---HHH-HHCCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCC-------CCEEEECCCHHH----HHHHCC--CCC-C-E
Q ss_conf ---754-2002333-2222222221112--222111112334-------320231010122----332013--454-2-1
Q gi|254781112|r 115 ---RQK-KYDFSIP-YIAHRVLLVVRSD--QQDIRSFKDLTD-------KTVAQILGTDLS----RFAKEL--KSH-L-V 172 (274)
Q Consensus 115 ---R~~-~~~fs~p-~~~~~~~~~~~~~--~~~~~~~~dL~g-------~~V~~~~g~~~~----~~l~~~--~~~-~-~ 172 (274)
.+. .+..-.+ +......+.++.. ...+++++||+. ..+|...|.... ...+.. +.. . .
T Consensus 72 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~a~~~i~sisDL~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
T 2rin_A 72 APYREDKSVETVRENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEV 151 (298)
T ss_dssp HHHHTTTSEEEEEEEEEEEEEEEEEEHHHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEE
T ss_pred HHHHHHCCCEECCCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCEE
T ss_conf 99886145311144456861588753044442767477776535523774672256422243314566650268876542
Q ss_pred EECCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCC------CCCEEEEEECC----CHHHHH
Q ss_conf 336855----7777554432100366558999999845876673262367768------77079998189----989999
Q gi|254781112|r 173 FSHNFE----QSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKD------NSAVAFMMRKG----NNKLTR 238 (274)
Q Consensus 173 ~~~~~~----~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~k~----~~~L~~ 238 (274)
...+.. +...++.+|+++++..-.+... +.+... ..+-++... ...+...++++ +|++.+
T Consensus 152 ~~~s~~a~~a~l~~A~~~~~~~v~~~w~p~~~--~~~~dL----~~LeDp~~~~~~~~~a~~v~~v~~~~~~~~~P~~~~ 225 (298)
T 2rin_A 152 VESSEQGMLAQVARAEKSGDPIVFLGWEPHPM--NANFKL----TYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDK 225 (298)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCCEEEEEESSTH--HHHSCE----EECBSCTTTTCHHHHEEEEEEEEETTHHHHSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHCCCE----EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH
T ss_conf 04646779999999984688579982687322--203764----780588544688876200002875667776979999
Q ss_pred HHHH----------HHHHHHHCC-HHHHHHHHHCCCC
Q ss_conf 9999----------999999798-5999998767888
Q gi|254781112|r 239 SINE----------ILCAIHLDG-TYKKIFDRYFDKN 264 (274)
Q Consensus 239 ~in~----------~l~~l~~~G-~~~~I~~kw~g~d 264 (274)
.+++ ...++..+| ..++.-+.|+..+
T Consensus 226 ~L~~~~l~~~~m~~ln~~v~~~g~~~~~vA~~wL~~n 262 (298)
T 2rin_A 226 LLQNLSFSLQMENEIMGKILNDGEDPEKAAAAWLKDN 262 (298)
T ss_dssp HHHHCCCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 9996779999999999999864999999999999979