HHsearch results for GI: 254781112 and protein with PDBid: 2rin_A

>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=96.23  E-value=0.0031  Score=38.36  Aligned_cols=207  Identities=14%  Similarity=0.084  Sum_probs=105.5

Q ss_pred             HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCC-C-CHH--
Q ss_conf             589589996289987248704699848898852167899762998555668988988643103221100003-6-756--
Q gi|254781112|r   39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVA-I-TPE--  114 (274)
Q Consensus        39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~-~-t~e--  114 (274)
                      +.++|+||. .+|.     .    +   =+..+|+..+.+++|++|+.++.+..-+..+|.+|++|+..... . +.+  
T Consensus         5 ~~~~V~ig~-~~w~-----~----~---~~~a~i~~~vLe~~Gy~Ve~~~~~~~~~~~al~~GdID~~~e~W~p~~~~~~   71 (298)
T 2rin_A            5 SCGTVRFSD-VGWT-----D----I---TATTATATTILEALGYETDVKVLSVPVTYTSLKNKDIDVFLGNWMPTMEADI   71 (298)
T ss_dssp             CTTEEEEEC-CSCH-----H----H---HHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHTSCCEEEEEEETTTHHHH
T ss_pred             CCCCEEEEE-CCCC-----H----H---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf             489769974-6976-----6----9---9999999999998699248986870999999987998088404664001667


Q ss_pred             ---HHH-HHCCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCC-------CCEEEECCCHHH----HHHHCC--CCC-C-E
Q ss_conf             ---754-2002333-2222222221112--222111112334-------320231010122----332013--454-2-1
Q gi|254781112|r  115 ---RQK-KYDFSIP-YIAHRVLLVVRSD--QQDIRSFKDLTD-------KTVAQILGTDLS----RFAKEL--KSH-L-V  172 (274)
Q Consensus       115 ---R~~-~~~fs~p-~~~~~~~~~~~~~--~~~~~~~~dL~g-------~~V~~~~g~~~~----~~l~~~--~~~-~-~  172 (274)
                         .+. .+..-.+ +......+.++..  ...+++++||+.       ..+|...|....    ...+..  +.. . .
T Consensus        72 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~a~~~i~sisDL~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (298)
T 2rin_A           72 APYREDKSVETVRENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEV  151 (298)
T ss_dssp             HHHHTTTSEEEEEEEEEEEEEEEEEEHHHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEE
T ss_pred             HHHHHHCCCEECCCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCEE
T ss_conf             99886145311144456861588753044442767477776535523774672256422243314566650268876542


Q ss_pred             EECCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCC------CCCEEEEEECC----CHHHHH
Q ss_conf             336855----7777554432100366558999999845876673262367768------77079998189----989999
Q gi|254781112|r  173 FSHNFE----QSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKD------NSAVAFMMRKG----NNKLTR  238 (274)
Q Consensus       173 ~~~~~~----~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~k~----~~~L~~  238 (274)
                      ...+..    +...++.+|+++++..-.+...  +.+...    ..+-++...      ...+...++++    +|++.+
T Consensus       152 ~~~s~~a~~a~l~~A~~~~~~~v~~~w~p~~~--~~~~dL----~~LeDp~~~~~~~~~a~~v~~v~~~~~~~~~P~~~~  225 (298)
T 2rin_A          152 VESSEQGMLAQVARAEKSGDPIVFLGWEPHPM--NANFKL----TYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDK  225 (298)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCCCEEEEEESSTH--HHHSCE----EECBSCTTTTCHHHHEEEEEEEEETTHHHHSHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHCCCE----EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH
T ss_conf             04646779999999984688579982687322--203764----780588544688876200002875667776979999


Q ss_pred             HHHH----------HHHHHHHCC-HHHHHHHHHCCCC
Q ss_conf             9999----------999999798-5999998767888
Q gi|254781112|r  239 SINE----------ILCAIHLDG-TYKKIFDRYFDKN  264 (274)
Q Consensus       239 ~in~----------~l~~l~~~G-~~~~I~~kw~g~d  264 (274)
                      .+++          ...++..+| ..++.-+.|+..+
T Consensus       226 ~L~~~~l~~~~m~~ln~~v~~~g~~~~~vA~~wL~~n  262 (298)
T 2rin_A          226 LLQNLSFSLQMENEIMGKILNDGEDPEKAAAAWLKDN  262 (298)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHS
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             9996779999999999999864999999999999979