HHsearch results for GI: 254781112 and protein with PDBid: 2vha_A
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=100.00 E-value=5.9e-42 Score=277.83 Aligned_cols=233 Identities=20% Similarity=0.326 Sum_probs=203.3
Q ss_pred HCHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-------CCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 1788788589589996289987248704699848898852167899762-------998555668988988643103221
Q gi|254781112|r 32 IYPFRTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-------NLKVEFFETAVSGLITGLDTNRYD 104 (274)
Q Consensus 32 ~~~~~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-------g~~~~~~~~~~~~~~~~l~~g~~D 104 (274)
..-.+++++|+|+||+..+||||+|. |++|+++||++||+++|++.+ +++++|++++|.+++.+|++|++|
T Consensus 8 ~~l~~i~~~g~l~Vg~~~~~~P~~~~--d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~G~~D 85 (287)
T 2vha_A 8 STLDKIAKNGVIVVGHRESSVPFSYY--DNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFD 85 (287)
T ss_dssp SHHHHHHHHTEEEEEECSEETTTEEE--CSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCS
T ss_pred CHHHHHHHCCEEEEEECCCCCCCEEE--CCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC
T ss_conf 10999970998999986898893689--9999888866999999999974773778706999987999999999869964
Q ss_pred CCH-HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC------CCCCCEEECCH
Q ss_conf 100-00367567542002333222222222111222211111233432023101012233201------34542133685
Q gi|254781112|r 105 VLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE------LKSHLVFSHNF 177 (274)
Q Consensus 105 ~~~-~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~------~~~~~~~~~~~ 177 (274)
+++ ++++|++|++.+.||.||+.....++++++. .+++++||+|++||++.|+.++.++.. .+.+++.+.+.
T Consensus 86 i~~~~~~~t~~R~~~~~fs~p~~~~~~~l~~~k~~-~i~~~~dL~g~~v~v~~gs~~~~~l~~~~~~~~~~~~iv~~~~~ 164 (287)
T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-DIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDH 164 (287)
T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-SCCSGGGGTTCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECCC-CCCCHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCHH
T ss_conf 34113446645654324554300047257775489-87898780898122137866999999988873789634652217
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 57777554432100366558999999845876673262367768770799981899899999999999999798599999
Q gi|254781112|r 178 EQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIF 257 (274)
Q Consensus 178 ~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~ 257 (274)
.+++++|.+||+|+++.+.....+++.+...... +.+...+....+++++++|++++|++.||++|++|++||++++|+
T Consensus 165 ~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~av~k~~~~L~~~in~~l~~l~~~G~~~~I~ 243 (287)
T 2vha_A 165 GDSFRTLESGRAVAFMMDDALLAGERAKAKKPDN-WDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWF 243 (287)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGG-EEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCC-EEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 8999999869940999614999999996578886-799378777631899994899999999999999999785999999
Q ss_pred HHHCCCCCCCC
Q ss_conf 87678887756
Q gi|254781112|r 258 DRYFDKNIISS 268 (274)
Q Consensus 258 ~kw~g~d~~~~ 268 (274)
+||||+.++++
T Consensus 244 ~kwf~~~~pp~ 254 (287)
T 2vha_A 244 DKWFKNPIPPK 254 (287)
T ss_dssp HHHHHSCBTTT
T ss_pred HHHCCCCCCCC
T ss_conf 99768999977