HHsearch results for GI: 254781112 and protein with PDBid: 3fxq_A
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=95.83 E-value=0.036 Score=31.72 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=109.7
Q ss_pred HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHH
Q ss_conf 88589589996289987248704699848898852167899762-99855566898898864310322110000367567
Q gi|254781112|r 37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPER 115 (274)
Q Consensus 37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR 115 (274)
....++|+||+.+.+.. . +..+++..+.++. ++.++++..+..+.+..+.+|++|++......++.
T Consensus 88 ~~~~~~l~I~~~~~~~~-~------------~l~~~i~~~~~~~p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~ 154 (305)
T 3fxq_A 88 GRWEGHITFAASPAIAL-A------------ALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDI 154 (305)
T ss_dssp HHHHTEEEEEECHHHHH-T------------HHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGS
T ss_pred CCCCCEEEEEECCCHHH-H------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 47662599962463027-6------------7899999999978997676574481777778755973489984055435
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEECCC-H----HHHHHHCCCC---C-CEEECCHHHHHHHH
Q ss_conf 5420023332222222221112222--111112334320231010-1----2233201345---4-21336855777755
Q gi|254781112|r 116 QKKYDFSIPYIAHRVLLVVRSDQQD--IRSFKDLTDKTVAQILGT-D----LSRFAKELKS---H-LVFSHNFEQSLQLL 184 (274)
Q Consensus 116 ~~~~~fs~p~~~~~~~~~~~~~~~~--~~~~~dL~g~~V~~~~g~-~----~~~~l~~~~~---~-~~~~~~~~~~~~~l 184 (274)
...+ ...|+...+.+++++++.+. ..+++|+.+......... . ..++..+.+. + ....++......++
T Consensus 155 ~~~l-~~~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v 233 (305)
T 3fxq_A 155 DTDL-EAQPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVV 233 (305)
T ss_dssp CTTE-EEEEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHH
T ss_pred CCCC-EEEECCCCCEEEEECCCCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 6884-378714441799986888456898956753021455237765312577899971986322333336799999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECC---CHHHHHHHHHHHHHHHHCC
Q ss_conf 44321003665589999998458766732623-6776877079998189---9899999999999999798
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKG---NNKLTRSINEILCAIHLDG 251 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~---~~~L~~~in~~l~~l~~~G 251 (274)
.+|..= .+.+...+... ........+. ..+.....+++..+++ ++.....++..=....++|
T Consensus 234 ~~g~gi-~~lp~~~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~~~~ 299 (305)
T 3fxq_A 234 AHSDLL-TTMPRTLYERN----AFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHALQTG 299 (305)
T ss_dssp HTSSCE-EEEEHHHHHSS----TTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC---
T ss_pred HCCCEE-EECCHHHHHHH----HHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 749989-98119999855----1379989996888887768999998969889999999999999999528