HHsearch results for GI: 254781112 and protein with PDBid: 3fxq_A

>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=95.83  E-value=0.036  Score=31.72  Aligned_cols=196  Identities=10%  Similarity=0.054  Sum_probs=109.7

Q ss_pred             HHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHH
Q ss_conf             88589589996289987248704699848898852167899762-99855566898898864310322110000367567
Q gi|254781112|r   37 TEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPER  115 (274)
Q Consensus        37 ~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR  115 (274)
                      ....++|+||+.+.+.. .            +..+++..+.++. ++.++++..+..+.+..+.+|++|++......++.
T Consensus        88 ~~~~~~l~I~~~~~~~~-~------------~l~~~i~~~~~~~p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~  154 (305)
T 3fxq_A           88 GRWEGHITFAASPAIAL-A------------ALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDI  154 (305)
T ss_dssp             HHHHTEEEEEECHHHHH-T------------HHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGS
T ss_pred             CCCCCEEEEEECCCHHH-H------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             47662599962463027-6------------7899999999978997676574481777778755973489984055435


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEEEECCC-H----HHHHHHCCCC---C-CEEECCHHHHHHHH
Q ss_conf             5420023332222222221112222--111112334320231010-1----2233201345---4-21336855777755
Q gi|254781112|r  116 QKKYDFSIPYIAHRVLLVVRSDQQD--IRSFKDLTDKTVAQILGT-D----LSRFAKELKS---H-LVFSHNFEQSLQLL  184 (274)
Q Consensus       116 ~~~~~fs~p~~~~~~~~~~~~~~~~--~~~~~dL~g~~V~~~~g~-~----~~~~l~~~~~---~-~~~~~~~~~~~~~l  184 (274)
                      ...+ ...|+...+.+++++++.+.  ..+++|+.+......... .    ..++..+.+.   + ....++......++
T Consensus       155 ~~~l-~~~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v  233 (305)
T 3fxq_A          155 DTDL-EAQPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVV  233 (305)
T ss_dssp             CTTE-EEEEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHH
T ss_pred             CCCC-EEEECCCCCEEEEECCCCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             6884-378714441799986888456898956753021455237765312577899971986322333336799999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECC---CHHHHHHHHHHHHHHHHCC
Q ss_conf             44321003665589999998458766732623-6776877079998189---9899999999999999798
Q gi|254781112|r  185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKG---NNKLTRSINEILCAIHLDG  251 (274)
Q Consensus       185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~---~~~L~~~in~~l~~l~~~G  251 (274)
                      .+|..= .+.+...+...    ........+. ..+.....+++..+++   ++.....++..=....++|
T Consensus       234 ~~g~gi-~~lp~~~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~~~~  299 (305)
T 3fxq_A          234 AHSDLL-TTMPRTLYERN----AFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHALQTG  299 (305)
T ss_dssp             HTSSCE-EEEEHHHHHSS----TTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC---
T ss_pred             HCCCEE-EECCHHHHHHH----HHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             749989-98119999855----1379989996888887768999998969889999999999999999528