HHsearch results for GI: 254781112 and protein with PDBid: 3g3k_A
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ...
Probab=99.96 E-value=2.7e-29 Score=199.48 Aligned_cols=221 Identities=17% Similarity=0.242 Sum_probs=164.0
Q ss_pred HCCCEEEEECCCCCCEEEEEECC-----CCCEEEEEEEEHHHHHHHCCCCCCCCCC-------------CHHHHHHHHHC
Q ss_conf 58958999628998724870469-----9848898852167899762998555668-------------98898864310
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDG-----RGELTGFDIDLIKEVAHRLNLKVEFFET-------------AVSGLITGLDT 100 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~-----~g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l~~ 100 (274)
.+++|+|++. .+|||.|.+.++ +|+++||++|+++++++++|++++++.+ +|++++..+++
T Consensus 2 ~~ktl~v~t~-~~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~lg~~~~~~~v~~~~~~~~~~~~~~w~~~~~~l~~ 80 (259)
T 3g3k_A 2 SNRSLIVTTI-LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELID 80 (259)
T ss_dssp -CCCEEEEEC-CBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHT
T ss_pred CCEEEEEEEC-CCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 9869999978-648987464688876789956885899999999980997589973555545334356788999876410
Q ss_pred CCCCCC-HHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEECCCHHHHHHHCCCC--------
Q ss_conf 322110-000367567542002333222222222111222--211111233432023101012233201345--------
Q gi|254781112|r 101 NRYDVL-VNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ--DIRSFKDLTDKTVAQILGTDLSRFAKELKS-------- 169 (274)
Q Consensus 101 g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~--~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~-------- 169 (274)
|++|++ .++++|++|++.+.||.||+.....++++++++ ...++.++.+.++++..+.....+......
T Consensus 81 g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T 3g3k_A 81 HKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYDKMWA 160 (259)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHHHHHH
T ss_pred CCCCEEEECCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 23577863586799999535466871225604552168865533454045422456772422788888720157789987
Q ss_pred ------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf ------42133685577775544321003665589999998458766732623677687707999818998999999999
Q gi|254781112|r 170 ------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEI 243 (274)
Q Consensus 170 ------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~ 243 (274)
......+..........+ .++++.+.........+... ......+....+++++++|+++ |++.||++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ia~~k~s~-L~~~in~a 234 (259)
T 3g3k_A 161 FMSSRRQSVLVKSNEEGIQRVLTS-DYAFLMESTTIEFVTQRNCN----LTQIGGLIDSKGYGVGTPMGSP-YRDKITLA 234 (259)
T ss_dssp HHHHTHHHHEESSHHHHHHHHHHS-SEEEEEEHHHHHHHHHHCTT----EEEESSCSSCEEECCEEETTCT-HHHHHHHH
T ss_pred HHCCHHHHHHHCCHHHHHHHHHCC-CEEEEECHHHHHHHHHCCCC----EEECCCCCCCCEEEEEEECCHH-HHHHHHHH
T ss_conf 520002456530078888775057-65998236889998741650----3422656677218999929849-99999999
Q ss_pred HHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 99999798599999876788877
Q gi|254781112|r 244 LCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 244 l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
|++|++||++++|++|||+-+-+
T Consensus 235 l~~m~~~G~~~~l~~Kwf~~~~~ 257 (259)
T 3g3k_A 235 ILKLQEQGKLHMMKEKWWRGNGC 257 (259)
T ss_dssp HHHHHHTC-CHHHHHHHHCC--C
T ss_pred HHHHHHCCHHHHHHHHHCCCCCC
T ss_conf 99999788999999987779999