HHsearch results for GI: 254781112 and protein with PDBid: 3g3k_A

>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ...
Probab=99.96  E-value=2.7e-29  Score=199.48  Aligned_cols=221  Identities=17%  Similarity=0.242  Sum_probs=164.0

Q ss_pred             HCCCEEEEECCCCCCEEEEEECC-----CCCEEEEEEEEHHHHHHHCCCCCCCCCC-------------CHHHHHHHHHC
Q ss_conf             58958999628998724870469-----9848898852167899762998555668-------------98898864310
Q gi|254781112|r   39 DQSALRVGTDGIYPPHSFHAQDG-----RGELTGFDIDLIKEVAHRLNLKVEFFET-------------AVSGLITGLDT  100 (274)
Q Consensus        39 ~~~~l~v~~~~~~pP~~~~~~d~-----~g~~~G~~~dl~~~i~~~lg~~~~~~~~-------------~~~~~~~~l~~  100 (274)
                      .+++|+|++. .+|||.|.+.++     +|+++||++|+++++++++|++++++.+             +|++++..+++
T Consensus         2 ~~ktl~v~t~-~~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~lg~~~~~~~v~~~~~~~~~~~~~~w~~~~~~l~~   80 (259)
T 3g3k_A            2 SNRSLIVTTI-LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELID   80 (259)
T ss_dssp             -CCCEEEEEC-CBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHT
T ss_pred             CCEEEEEEEC-CCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             9869999978-648987464688876789956885899999999980997589973555545334356788999876410


Q ss_pred             CCCCCC-HHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEECCCHHHHHHHCCCC--------
Q ss_conf             322110-000367567542002333222222222111222--211111233432023101012233201345--------
Q gi|254781112|r  101 NRYDVL-VNVAITPERQKKYDFSIPYIAHRVLLVVRSDQQ--DIRSFKDLTDKTVAQILGTDLSRFAKELKS--------  169 (274)
Q Consensus       101 g~~D~~-~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~--~~~~~~dL~g~~V~~~~g~~~~~~l~~~~~--------  169 (274)
                      |++|++ .++++|++|++.+.||.||+.....++++++++  ...++.++.+.++++..+.....+......        
T Consensus        81 g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (259)
T 3g3k_A           81 HKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYDKMWA  160 (259)
T ss_dssp             TSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHHHHHH
T ss_pred             CCCCEEEECCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             23577863586799999535466871225604552168865533454045422456772422788888720157789987


Q ss_pred             ------CCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf             ------42133685577775544321003665589999998458766732623677687707999818998999999999
Q gi|254781112|r  170 ------HLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEI  243 (274)
Q Consensus       170 ------~~~~~~~~~~~~~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~  243 (274)
                            ......+..........+ .++++.+.........+...    ......+....+++++++|+++ |++.||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ia~~k~s~-L~~~in~a  234 (259)
T 3g3k_A          161 FMSSRRQSVLVKSNEEGIQRVLTS-DYAFLMESTTIEFVTQRNCN----LTQIGGLIDSKGYGVGTPMGSP-YRDKITLA  234 (259)
T ss_dssp             HHHHTHHHHEESSHHHHHHHHHHS-SEEEEEEHHHHHHHHHHCTT----EEEESSCSSCEEECCEEETTCT-HHHHHHHH
T ss_pred             HHCCHHHHHHHCCHHHHHHHHHCC-CEEEEECHHHHHHHHHCCCC----EEECCCCCCCCEEEEEEECCHH-HHHHHHHH
T ss_conf             520002456530078888775057-65998236889998741650----3422656677218999929849-99999999


Q ss_pred             HHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf             99999798599999876788877
Q gi|254781112|r  244 LCAIHLDGTYKKIFDRYFDKNII  266 (274)
Q Consensus       244 l~~l~~~G~~~~I~~kw~g~d~~  266 (274)
                      |++|++||++++|++|||+-+-+
T Consensus       235 l~~m~~~G~~~~l~~Kwf~~~~~  257 (259)
T 3g3k_A          235 ILKLQEQGKLHMMKEKWWRGNGC  257 (259)
T ss_dssp             HHHHHHTC-CHHHHHHHHCC--C
T ss_pred             HHHHHHCCHHHHHHHHHCCCCCC
T ss_conf             99999788999999987779999