HHsearch results for GI: 254781112 and protein with PDBid: 3ho7_A

>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.53  E-value=0.0058  Score=36.66  Aligned_cols=189  Identities=11%  Similarity=0.070  Sum_probs=102.7

Q ss_pred             HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf             589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r   39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK  117 (274)
Q Consensus        39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~  117 (274)
                      -.|+|+||+.+...++             +..+++..+.++. ++++++...+..+.++.|.+|++|++.......  ..
T Consensus         9 ~~G~l~ig~~~s~~~~-------------~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~~~~--~~   73 (232)
T 3ho7_A            9 LTGRLNIAVLPTIAPY-------------LLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAE--TE   73 (232)
T ss_dssp             -CEEEEEEECTTTHHH-------------HHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCC--CT
T ss_pred             CEEEEEEEEEHHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCC--CC
T ss_conf             6279999943778999-------------99999999999888968999989828999999779842898634765--54


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---C-CEEECCHHHHHHHH
Q ss_conf             20023332222222221112222----11111233432023-1010122----33201345---4-21336855777755
Q gi|254781112|r  118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---H-LVFSHNFEQSLQLL  184 (274)
Q Consensus       118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~-~~~~~~~~~~~~~l  184 (274)
                      .+ -..+++....+++++++.+.    .-+.++|.+..+.. ..+..+.    ++..+.+.   + .....+......++
T Consensus        74 ~l-~~~~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv  152 (232)
T 3ho7_A           74 GL-EDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLV  152 (232)
T ss_dssp             TE-EEEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHH
T ss_pred             CC-EEEEECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             30-03420001022211134543322222133314553798259974267999999975998876501358889999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             4432100366558999999845876673262367768770799981899899999999999999
Q gi|254781112|r  185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIH  248 (274)
Q Consensus       185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~  248 (274)
                      .+|-.=+ +.+...+..+....   .........+.....++++.+++.. +...+.+.++.++
T Consensus       153 ~~g~Gia-~lP~~~~~~~~~~~---~l~~~p~~~~~~~~~i~lv~~~~~~-~~~~~~~fi~~l~  211 (232)
T 3ho7_A          153 ESGQGIT-FIPQLTVEQLSPSQ---KELVRPFGMPRPVREVRLAVRQDYS-RRKLREQLIGLLR  211 (232)
T ss_dssp             HTTCCEE-EEEGGGGGGSCHHH---HTTEECBCSSEEEEEEEEEEETTCS-CHHHHHHHHHHHH
T ss_pred             HHCCEEE-EECHHHHHHHCCCC---CEEEEECCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHH
T ss_conf             9399899-83099998550279---8899988999865599999989398-8999999999999