HHsearch results for GI: 254781112 and protein with PDBid: 3ho7_A
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.53 E-value=0.0058 Score=36.66 Aligned_cols=189 Identities=11% Similarity=0.070 Sum_probs=102.7
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
-.|+|+||+.+...++ +..+++..+.++. ++++++...+..+.++.|.+|++|++....... ..
T Consensus 9 ~~G~l~ig~~~s~~~~-------------~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~~~~--~~ 73 (232)
T 3ho7_A 9 LTGRLNIAVLPTIAPY-------------LLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAE--TE 73 (232)
T ss_dssp -CEEEEEEECTTTHHH-------------HHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCC--CT
T ss_pred CEEEEEEEEEHHHHHH-------------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCC--CC
T ss_conf 6279999943778999-------------99999999999888968999989828999999779842898634765--54
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE-ECCCHHH----HHHHCCCC---C-CEEECCHHHHHHHH
Q ss_conf 20023332222222221112222----11111233432023-1010122----33201345---4-21336855777755
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQD----IRSFKDLTDKTVAQ-ILGTDLS----RFAKELKS---H-LVFSHNFEQSLQLL 184 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~----~~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~---~-~~~~~~~~~~~~~l 184 (274)
.+ -..+++....+++++++.+. .-+.++|.+..+.. ..+..+. ++..+.+. + .....+......++
T Consensus 74 ~l-~~~~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 152 (232)
T 3ho7_A 74 GL-EDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLV 152 (232)
T ss_dssp TE-EEEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHH
T ss_pred CC-EEEEECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 30-03420001022211134543322222133314553798259974267999999975998876501358889999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 4432100366558999999845876673262367768770799981899899999999999999
Q gi|254781112|r 185 LSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIH 248 (274)
Q Consensus 185 ~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~ 248 (274)
.+|-.=+ +.+...+..+.... .........+.....++++.+++.. +...+.+.++.++
T Consensus 153 ~~g~Gia-~lP~~~~~~~~~~~---~l~~~p~~~~~~~~~i~lv~~~~~~-~~~~~~~fi~~l~ 211 (232)
T 3ho7_A 153 ESGQGIT-FIPQLTVEQLSPSQ---KELVRPFGMPRPVREVRLAVRQDYS-RRKLREQLIGLLR 211 (232)
T ss_dssp HTTCCEE-EEEGGGGGGSCHHH---HTTEECBCSSEEEEEEEEEEETTCS-CHHHHHHHHHHHH
T ss_pred HHCCEEE-EECHHHHHHHCCCC---CEEEEECCCCCCEEEEEEEEECCCC-CCHHHHHHHHHHH
T ss_conf 9399899-83099998550279---8899988999865599999989398-8999999999999