HHsearch results for GI: 254781112 and protein with PDBid: 3jv9_A
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.47 E-value=0.053 Score=30.70 Aligned_cols=184 Identities=13% Similarity=0.140 Sum_probs=104.7
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf 89589996289987248704699848898852167899762-99855566898898864310322110000367567542
Q gi|254781112|r 40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK 118 (274)
Q Consensus 40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~ 118 (274)
+|+||||+.+...++- ...++..+.++. ++++++...+...+++.|.+|++|++......+ ...
T Consensus 3 ~G~lrIG~~~s~~~~~-------------lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~~--~~~ 67 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYL-------------LPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQ--EPG 67 (219)
T ss_dssp CCCEEEEEETTTHHHH-------------HHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCC--CTT
T ss_pred CEEEEEEEEHHHHHHH-------------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCC--CCC
T ss_conf 0289999777889999-------------9999999999888928999988737777656169588875026877--787
Q ss_pred HCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEE-ECCCHHHHHH----HCCC--------CCCEEECCHHHHH
Q ss_conf 002333222222222111222----211111233432023-1010122332----0134--------5421336855777
Q gi|254781112|r 119 YDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQ-ILGTDLSRFA----KELK--------SHLVFSHNFEQSL 181 (274)
Q Consensus 119 ~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~-~~g~~~~~~l----~~~~--------~~~~~~~~~~~~~ 181 (274)
+ -+.+++....+++++++.. ...+++|+.+..... ..+......+ .+.+ .......+.....
T Consensus 68 ~-~~~~l~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (219)
T 3jv9_A 68 I-VTEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIR 146 (219)
T ss_dssp E-EEEEEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHH
T ss_pred E-EEEEECCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHH
T ss_conf 4-898503310899975664212245421133322774446888526789999999758985313455626778799999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCC--HHHHHHHHHHHH
Q ss_conf 75544321003665589999998458766732623-67768770799981899--899999999999
Q gi|254781112|r 182 QLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGN--NKLTRSINEILC 245 (274)
Q Consensus 182 ~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~--~~L~~~in~~l~ 245 (274)
+++.+|..=+ +.+.... ............ ..+.....++++.+|+. +.....+-+.|.
T Consensus 147 ~lv~~G~Gi~-~lP~~~~-----~~~~~~~l~~~pl~~~~~~~~i~lv~~k~~~~~~~~~~~~~~l~ 207 (219)
T 3jv9_A 147 HMVASGLAIS-VLPATAL-----TENDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIM 207 (219)
T ss_dssp HHHHHTSCEE-EEEGGGC-----CTTCTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHH
T ss_pred HHHHCCCEEE-ECCHHHH-----HHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9998599899-8718897-----11427998999888998545999999894988999999999999