HHsearch results for GI: 254781112 and protein with PDBid: 3jv9_A

>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.47  E-value=0.053  Score=30.70  Aligned_cols=184  Identities=13%  Similarity=0.140  Sum_probs=104.7

Q ss_pred             CCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHHH
Q ss_conf             89589996289987248704699848898852167899762-99855566898898864310322110000367567542
Q gi|254781112|r   40 QSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKK  118 (274)
Q Consensus        40 ~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~~  118 (274)
                      +|+||||+.+...++-             ...++..+.++. ++++++...+...+++.|.+|++|++......+  ...
T Consensus         3 ~G~lrIG~~~s~~~~~-------------lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~~--~~~   67 (219)
T 3jv9_A            3 EGAFKLGLIFTVAPYL-------------LPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQ--EPG   67 (219)
T ss_dssp             CCCEEEEEETTTHHHH-------------HHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCC--CTT
T ss_pred             CEEEEEEEEHHHHHHH-------------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCC--CCC
T ss_conf             0289999777889999-------------9999999999888928999988737777656169588875026877--787


Q ss_pred             HCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEE-ECCCHHHHHH----HCCC--------CCCEEECCHHHHH
Q ss_conf             002333222222222111222----211111233432023-1010122332----0134--------5421336855777
Q gi|254781112|r  119 YDFSIPYIAHRVLLVVRSDQQ----DIRSFKDLTDKTVAQ-ILGTDLSRFA----KELK--------SHLVFSHNFEQSL  181 (274)
Q Consensus       119 ~~fs~p~~~~~~~~~~~~~~~----~~~~~~dL~g~~V~~-~~g~~~~~~l----~~~~--------~~~~~~~~~~~~~  181 (274)
                      + -+.+++....+++++++..    ...+++|+.+..... ..+......+    .+.+        .......+.....
T Consensus        68 ~-~~~~l~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (219)
T 3jv9_A           68 I-VTEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIR  146 (219)
T ss_dssp             E-EEEEEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHH
T ss_pred             E-EEEEECCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHH
T ss_conf             4-898503310899975664212245421133322774446888526789999999758985313455626778799999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEC-CCCCCCCCEEEEEECCC--HHHHHHHHHHHH
Q ss_conf             75544321003665589999998458766732623-67768770799981899--899999999999
Q gi|254781112|r  182 QLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIA-DRMKDNSAVAFMMRKGN--NKLTRSINEILC  245 (274)
Q Consensus       182 ~~l~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~--~~L~~~in~~l~  245 (274)
                      +++.+|..=+ +.+....     ............ ..+.....++++.+|+.  +.....+-+.|.
T Consensus       147 ~lv~~G~Gi~-~lP~~~~-----~~~~~~~l~~~pl~~~~~~~~i~lv~~k~~~~~~~~~~~~~~l~  207 (219)
T 3jv9_A          147 HMVASGLAIS-VLPATAL-----TENDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIM  207 (219)
T ss_dssp             HHHHHTSCEE-EEEGGGC-----CTTCTTTEEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHH
T ss_pred             HHHHCCCEEE-ECCHHHH-----HHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9998599899-8718897-----11427998999888998545999999894988999999999999