HHsearch results for GI: 254781112 and protein with PDBid: 3k4u_A
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes}
Probab=100.00 E-value=1.9e-37 Score=250.01 Aligned_cols=223 Identities=26% Similarity=0.479 Sum_probs=191.8
Q ss_pred HHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCH-HCCCCHHHH
Q ss_conf 8589589996289987248704699848898852167899762998555668988988643103221100-003675675
Q gi|254781112|r 38 EDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLV-NVAITPERQ 116 (274)
Q Consensus 38 ~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~-~~~~t~eR~ 116 (274)
+.+|+||||++.+||||+|. |++|+++||++|+++++++++|++++|++++|.+++..+..|++|+++ +++.+++|+
T Consensus 2 ~~rg~lrvgv~~~~pP~~~~--d~~g~~~G~~~Dl~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 79 (245)
T 3k4u_A 2 SLRGELRVGLEPGYLPFEMK--DKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERN 79 (245)
T ss_dssp -CCSEEEEEECTTSTTTCEE--ETTTEEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHH
T ss_pred CCCCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHH
T ss_conf 98878999982898893689--9999888729999999999949966997337088899986699778986785687777
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC--CEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHC
Q ss_conf 42002333222222222111222-21111123343--2023101012233201--3454213368557777554432100
Q gi|254781112|r 117 KKYDFSIPYIAHRVLLVVRSDQQ-DIRSFKDLTDK--TVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDA 191 (274)
Q Consensus 117 ~~~~fs~p~~~~~~~~~~~~~~~-~~~~~~dL~g~--~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~ 191 (274)
+.+.||.|++.....++++++.. .+.+..++.++ .+++..|+..+.++++ .+.+++.+.+.++++++|.+||+|+
T Consensus 80 ~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~L~~GrvD~ 159 (245)
T 3k4u_A 80 LRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADM 159 (245)
T ss_dssp TTSEECSCSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEE
T ss_pred HHCCCCCCEECCCCCCHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCE
T ss_conf 53346786120441100014654446787785145542134777237899997377862899842178999997799659
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf 3665589999998458766732623677687707999818998999999999999997985999998767888
Q gi|254781112|r 192 TMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264 (274)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d 264 (274)
++.+...+.+++.+.+.. .......+....+++++++|++++|++.||++|.+|++||++++|++|||+++
T Consensus 160 ~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~ky~~~~ 230 (245)
T 3k4u_A 160 FIFDLPFNVAFMAQKGQG--YLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDT 230 (245)
T ss_dssp EEEEHHHHHHHHHHTTTT--TEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCC
T ss_pred EEECCHHHHHHHHHCCCC--CCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 997327777999864876--64212214777618999969999999999999999996839999999987993