HHsearch results for GI: 254781112 and protein with PDBid: 3mpk_A
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=100.00 E-value=9.7e-41 Score=270.29 Aligned_cols=227 Identities=17% Similarity=0.272 Sum_probs=202.4
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCCCCHHCCCCHH
Q ss_conf 788589589996289987248704699848898852167899762998555668-9889886431032211000036756
Q gi|254781112|r 36 RTEDQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFET-AVSGLITGLDTNRYDVLVNVAITPE 114 (274)
Q Consensus 36 ~~~~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~lg~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~t~e 114 (274)
.++++++||||++.+||||+|. |++|++.|+++|+++++++++|++++++++ +|.+++..+++|++|+++++++|++
T Consensus 27 wl~~~~~l~v~~~~~~~P~~~~--~~~g~~~G~~~dll~~i~~~lg~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~t~~ 104 (267)
T 3mpk_A 27 WMADHPVVKVAVLNLFAPFTLF--RTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSA 104 (267)
T ss_dssp HHHHCSEEEEEEETEETTTEEC--CTTCCCBSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEEEEEECCGG
T ss_pred HHHHCCEEEEEECCCCCCCEEE--CCCCCEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 9982993999984898995699--89998877899999999998499579998289999999863696659964789988
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC--CCCCCEEECCHHHHHHHHHHHHHHCC
Q ss_conf 7542002333222222222111222211111233432023101012233201--34542133685577775544321003
Q gi|254781112|r 115 RQKKYDFSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKE--LKSHLVFSHNFEQSLQLLLSKRTDAT 192 (274)
Q Consensus 115 R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dL~g~~V~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~grvD~~ 192 (274)
|.+.+.||.||+....+++++++...+.+++||+|++||++.|+.+..++.+ .+.+++.+++..+++++|.+||+|++
T Consensus 105 r~~~~~~s~p~~~~~~~~v~~~~~~~~~~~~~l~g~~i~~~~g~~~~~~l~~~~~~~~i~~~~~~~~~l~~L~~GrvDa~ 184 (267)
T 3mpk_A 105 RESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAV 184 (267)
T ss_dssp GTTTEEECSCSEEECEEEEEESSTTSCSSGGGCTTCEEEEETTCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEE
T ss_pred HHHCCCCCCCEECCCEEEEEECCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEE
T ss_conf 98407767621304404542014434579889658730554154056999972887417998068987789887986768
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 66558999999845876673262367768770799981899899999999999999798599999876788877
Q gi|254781112|r 193 MIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKNII 266 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~~~G~~~~I~~kw~g~d~~ 266 (274)
+.+...+.+++++.+.....+ .......+.+++++++|++++|++.||++|.+|+ +|++++|++||||+|..
T Consensus 185 i~~~~~~~~~l~~~~~~~~~v-~~~~~~~~~~~~~~~~k~~~~L~~~in~~L~~l~-~~~~~~I~~kw~g~d~~ 256 (267)
T 3mpk_A 185 VQTQISASYYVNRYFAGKLRI-ASALDLPPAEIALATTRGQTELMSILNKALYSIS-NDELASIISRWRGSDGD 256 (267)
T ss_dssp EEEHHHHHHHHHHHCTTTEEE-EEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSC-HHHHHHHHHTTC-----
T ss_pred ECCHHHHHHHHHHCCCCCEEE-EECCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC-HHHHHHHHHHHCCCCCC
T ss_conf 427999999998389997699-5046777526999994899999999999999708-55999999986799989