HHsearch results for GI: 254781112 and protein with PDBid: 3oxn_A
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.63 E-value=0.028 Score=32.40 Aligned_cols=192 Identities=11% Similarity=0.030 Sum_probs=109.0
Q ss_pred HCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCHHHHH
Q ss_conf 589589996289987248704699848898852167899762-9985556689889886431032211000036756754
Q gi|254781112|r 39 DQSALRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRL-NLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQK 117 (274)
Q Consensus 39 ~~~~l~v~~~~~~pP~~~~~~d~~g~~~G~~~dl~~~i~~~l-g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~t~eR~~ 117 (274)
.+++++||+.+.... .+...++..+.+.. |+++++...+.+.+.+.|..|++|++.+....+. .
T Consensus 17 ~~~~~rI~~~~~~~~-------------~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~~~~~--~ 81 (241)
T 3oxn_A 17 CDQTFTIATTDYAMQ-------------TILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPV--E 81 (241)
T ss_dssp CCCEEEEEECSHHHH-------------HTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCC--T
T ss_pred CCCEEEEEECHHHHH-------------HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCC--C
T ss_conf 686899997379999-------------9999999999998869289999798799999997598542220267874--1
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCEEE-ECCCHHH----HHHHCCCC-C-CEEECCHHHHHHHHHHH
Q ss_conf 200233322222222211122221---1111233432023-1010122----33201345-4-21336855777755443
Q gi|254781112|r 118 KYDFSIPYIAHRVLLVVRSDQQDI---RSFKDLTDKTVAQ-ILGTDLS----RFAKELKS-H-LVFSHNFEQSLQLLLSK 187 (274)
Q Consensus 118 ~~~fs~p~~~~~~~~~~~~~~~~~---~~~~dL~g~~V~~-~~g~~~~----~~l~~~~~-~-~~~~~~~~~~~~~l~~g 187 (274)
. .-+.+++....+++++++.+.. -+++|+....... ..+.... ..+.+... + .....+....+.++..|
T Consensus 82 ~-l~~~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~lv~~~ 160 (241)
T 3oxn_A 82 P-LRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTL 160 (241)
T ss_dssp T-EEEEEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--C
T ss_pred C-CCCCCCCCCCCEEECCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 0-113543223640223766503202588999952986999579986239999999679998559967899999999759
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEC---CCHH---HHHHHHHHHHHHHHC
Q ss_conf 21003665589999998458766732623677687707999818---9989---999999999999979
Q gi|254781112|r 188 RTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRK---GNNK---LTRSINEILCAIHLD 250 (274)
Q Consensus 188 rvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~~---L~~~in~~l~~l~~~ 250 (274)
.. .++.+...+..+...... . +.-.+.......++++-++ .+|. |++.+-+...++.+.
T Consensus 161 ~~-i~ilP~~~~~~~~~~~~L--~-~~plp~~~p~~~~~l~Wh~~~~~~pa~~wlR~~i~e~~~~l~~~ 225 (241)
T 3oxn_A 161 PI-IITVPADLAYLVAERYDL--V-VKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSRLIAK 225 (241)
T ss_dssp CC-EEEEEHHHHHHHHHHTTE--E-EECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CE-EEEHHHHHHHHHHHCCCE--E-EECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 97-998799999988653996--9-98489998976899997999889989999999999999999997