RPSBLAST alignment of GI: 254781112 and protein with PDBid: 1yae
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312
Score = 99.3 bits (246), Expect = 8e-22
Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 63/280 (22%)
Query: 43 LRVGTDGIYPPHSFHAQD-----GRGELTGFDIDLIKEVAHRLNLKVEFFE--------- 88
L V T + P+ + G G+ IDL++E++ L E
Sbjct: 15 LIVTTI-LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQ 73
Query: 89 ----TAVSGLITGLDTNRYDVLVN-VAITPERQKKYDFSIPYIAHRVLLVVRSD------ 137
+G++ L ++ D+ V +AIT R+K DFS P++ + ++ R
Sbjct: 74 DDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPG 133
Query: 138 ------------------QQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHN--- 176
+ I S DL +T + + K + +++
Sbjct: 134 VFSFLNGGSLVPRGSERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMW 193
Query: 177 ------------FEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSA 224
+ +D + + F+ +R + + D+
Sbjct: 194 AFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCN---LTQIGGLIDSKG 250
Query: 225 VAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYFDKN 264
G + I + + +G + ++++ N
Sbjct: 251 YGVGTPMG-SPYRDKITIAILQLQEEGKLHMMKEKWWRGN 289