RPSBLAST alignment of GI: 254781112 and protein with PDBid: 3k4u
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245
Score = 109 bits (272), Expect = 8e-25
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 6/223 (2%)
Query: 43 LRVGTDGIYPPHSFHAQDGRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNR 102
LRVG + Y P +D +G + GFD+DL +E+A + +K++ T+ GLI GL T +
Sbjct: 7 LRVGLEPGYLPFEM--KDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEK 64
Query: 103 YDVLV-NVAITPERQKKYDFSIPYIAHRVLLVVRSDQQD-IRSFKDLTDKTVAQILG--T 158
+D+++ + I+ ER + +F PYI L+V+ + ++S+KDL + +
Sbjct: 65 FDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGV 124
Query: 159 DLSRFAKELKSHLVFSHNFEQSLQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADR 218
AK L + ++ + A M FN D
Sbjct: 125 SAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDT 184
Query: 219 MKDNSAVAFMMRKGNNKLTRSINEILCAIHLDGTYKKIFDRYF 261
+ + ++KG+ +N L I DG+Y ++++R+F
Sbjct: 185 SLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWF 227