BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781112|ref|YP_003065525.1| putative amino acid-binding
periplasmic ABC transporter protein [Candidatus Liberibacter asiaticus
str. psy62]
(274 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 274
Score = 559 bits (1441), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MRRLLRDLRKIFFSKYLFFAPFFILFSYYFVIYPFRTEDQSALRVGTDGIYPPHSFHAQD 60
MRRLLRDLRKIFFSKYLFFAPFFILFSYYFVIYPFRTEDQSALRVGTDGIYPPHSFHAQD
Sbjct: 1 MRRLLRDLRKIFFSKYLFFAPFFILFSYYFVIYPFRTEDQSALRVGTDGIYPPHSFHAQD 60
Query: 61 GRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYD 120
GRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYD
Sbjct: 61 GRGELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYD 120
Query: 121 FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQS 180
FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQS
Sbjct: 121 FSIPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQS 180
Query: 181 LQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSI 240
LQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSI
Sbjct: 181 LQLLLSKRTDATMIPDIPFFNFLERRPHDGNLFKIADRMKDNSAVAFMMRKGNNKLTRSI 240
Query: 241 NEILCAIHLDGTYKKIFDRYFDKNIISSVPGCSS 274
NEILCAIHLDGTYKKIFDRYFDKNIISSVPGCSS
Sbjct: 241 NEILCAIHLDGTYKKIFDRYFDKNIISSVPGCSS 274
>gi|254780956|ref|YP_003065369.1| thymidylate synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 264
Score = 25.4 bits (54), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 140 DIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQS-LQLLLSKRTDATMIPDIP 198
+I S+ LT +A ++G F L +++++FEQ+ LQL S RT MI +
Sbjct: 177 NIASYSLLT-MMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN 235
Query: 199 FFNFLERRPHD 209
+ L R D
Sbjct: 236 IVDLLSFRYED 246
>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
Liberibacter asiaticus str. psy62]
Length = 833
Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)
Query: 63 GELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFS 122
G +T +D+ K + +EF TAV+ ++T + + D +V + K Y S
Sbjct: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
Query: 123 IPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILG 157
I SF+DL DK++ + LG
Sbjct: 755 I-------------------SFRDLIDKSINETLG 770
>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 150 KTVAQILGTDLSRFAKELKSHLVFSHNFEQS 180
KT+A G DL +F++ +KS F ++EQ+
Sbjct: 449 KTMASHCGLDLQQFSQNVKSTSTF-EDWEQA 478
>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 343
Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 49 GIYPPHSFHAQDGRGELTGF-------DIDLIKEVAHRLNLKVEFFET 89
GI P S A R ++T D+D++ A +LNL V +ET
Sbjct: 16 GIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62
>gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 322
Score = 24.3 bits (51), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 133 VVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHN 176
++R D+++I F QI G D+S+ + K F +N
Sbjct: 32 ILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYN 75
>gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 273
Score = 24.3 bits (51), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 74 KEVAHRLNLKVEFFETA-----VSGLI--TGLDTNRYDVLVNVAITPE 114
KE+A RLN+ + FE A ++G++ T ++T + ++ I+ E
Sbjct: 34 KEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTE 81
>537021.9.peg.753_1
Length = 1033
Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 89 TAVSGLITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLLVVR 135
TA + IT +D R+ +L + P+R DF I + R V+R
Sbjct: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 526
Score = 23.1 bits (48), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 64 ELTGFDIDLIKEVAHRLNLKVEFFE 88
+LTG+ ID+I E +N + +F E
Sbjct: 333 QLTGWTIDIITEEEDSINRQKDFNE 357
>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 805
Score = 22.7 bits (47), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 83 KVEFFETAVSGLITGLDTNRYDVLVNVAI 111
+++ + G G D N DVLV VA+
Sbjct: 309 RIQSIAGIIGGKHAGCDDNTTDVLVEVAL 337
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.327 0.142 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,246
Number of Sequences: 1233
Number of extensions: 7363
Number of successful extensions: 34
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 13
length of query: 274
length of database: 328,796
effective HSP length: 73
effective length of query: 201
effective length of database: 238,787
effective search space: 47996187
effective search space used: 47996187
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 38 (19.2 bits)