HHsearch alignment for GI: 254781113 and conserved domain: COG4209
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].
Probab=99.56 E-value=1.7e-13 Score=92.86 Aligned_cols=194 Identities=14% Similarity=0.151 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHC-----
Q ss_conf 99999999999999999999999999999970676379999999999985553222-22211122----333210-----
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLV-QLFVIFYG----LPHIGI----- 86 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv-~l~~~~f~----~~~~g~----- 86 (226)
T Consensus 77 ff~i~rNTl~~s~~~li~gf~~pI~lAillnElr~~~~kk~~QT~~y----~PhFlSWVVv~~~v~~fls~d~GiiN~ll 152 (309)
T COG4209 77 FFIILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKVVQTISY----LPHFLSWVVVSGFVFAFLSIDGGIINQLL 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCHHEEEHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999999999999953799999999999987778888766333----00021003056578876366751899999
Q ss_pred -----------CCCCCCCCCC-CH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------1443333331-00-1100000157899988752833689986517463565778752235764456778
Q gi|254781113|r 87 -----------VFDSFVAIII-SL-TLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLS 153 (226)
Q Consensus 87 -----------~~~~~~~~ii-~l-~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~ 153 (226)
T Consensus 153 ~~~g~~pi~fl~~~~wf~~i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivI--- 229 (309)
T COG4209 153 MSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVI--- 229 (309)
T ss_pred HHCCCCCEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHH---
T ss_conf 98289831021588602678878988842367889999999727999999998054887788882110323149999---
Q ss_pred HHHHHHHH---HHH--HHHH------HHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78898752---679--9999------7699999-99999983235779999999999999999999999999998621
Q gi|254781113|r 154 SEFISILK---STS--VAST------ITIPEIF-QTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 154 ~~~i~lik---~ts--l~s~------ig~~el~-~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
T Consensus 230 -llIL~iG~i~~~gFe~~yll~~~~~~~v~~vldtYVy~~gl~~-Gd~s~sTAaGlf~svVg~iLl~~aN~iakr~~~ 305 (309)
T COG4209 230 -LLILNIGNIFNAGFELFYLLPNPSGYDVTEVLDTYVYRGGLVT-GDYSYSTAAGLFQSVVGFILLFLANRIAKRFDN 305 (309)
T ss_pred -HHHHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -9999852376537256066057668748989999999810135-751189999999999999999999999997062