HHsearch alignment for GI: 254781113 and conserved domain: COG4239
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=99.44 E-value=1.3e-11 Score=82.44 Aligned_cols=189 Identities=15% Similarity=0.248 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999999999999999970676379999999999985553222222111223332101443333331
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~ii 96 (226)
T Consensus 136 liygfRiSvLfgL~lT~~SaliGv~~GA~qGyfgg-~vdL~~QRfIEvws~mP~lyllii~as~~~------p~f~~ll~ 208 (341)
T COG4239 136 LIYGFRISVLFGLSLTLISALIGVLAGALQGYFGG-WVDLLGQRFIEVWSGMPTLYLLIILASIFQ------PNFWWLLG 208 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHC------CCHHHHHH
T ss_conf 99999999999999999999999988877534130-048877059999844729999999999968------54799999
Q ss_pred CHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---
Q ss_conf 00110000015789998-87528336899865174635657787522357644567---787889875267999997---
Q gi|254781113|r 97 SLTLNFSAYISEIIRSS-IISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP---LSSEFISILKSTSVASTI--- 169 (226)
Q Consensus 97 ~l~l~~~~~~~~i~r~~-l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~---l~~~~i~lik~tsl~s~i--- 169 (226)
T Consensus 209 i~llf~Wm~lv~vvRaefLr~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTl--t-sLdFLgfg 285 (341)
T COG4239 209 IMLLFGWMSLVGVVRAEFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTL--T-SLDFLGFG 285 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHH--H-HHHHHCCC
T ss_conf 99999999999999999998602688999997398865030213262988999998789870633230--0-16665269
Q ss_pred ------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------69999999999983235779999999999999999999999999998621
Q gi|254781113|r 170 ------TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 170 ------g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
T Consensus 286 lp~gspSLGELl~qgk~nlqapWlgit~fv~l~~~ls----lLvfIgea~Rdafdp 337 (341)
T COG4239 286 LPPGSPSLGELLNQGKNNLQAPWLGITAFVVLSLLLS----LLIFIGEAVRDAFDP 337 (341)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC
T ss_conf 9999967899999765247784255889999999999----999942998863150