HHsearch alignment for GI: 254781113 and conserved domain: PRK10561
>PRK10561 glycerol-3-phosphate transporter permease; Provisional.
Probab=99.83 E-value=4.3e-19 Score=123.57 Aligned_cols=209 Identities=13% Similarity=0.167 Sum_probs=125.4
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 999999-----999999999999999999999999999999970676379999999999985553222222111223---
Q gi|254781113|r 10 IDSFPQ-----LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL--- 81 (226)
Q Consensus 10 ~~~~~~-----~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~--- 81 (226)
T Consensus 41 l~Ny~~l~~d~~f~~~~~ntl~~~~~~~~~~~~l~l~lA~ll-~~~~~-~~~~~r~~~~lP~~i~~vv~~~~w~~l~~~~ 118 (280)
T PRK10561 41 LDNFVALFHDSYYLDSFWTTIKFSALVTVSGLLVSLFFAALV-DYVVR-GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPG 118 (280)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
T ss_conf 999999987977999999999999999999999999999998-61020-7899999999875531999999999996987
Q ss_pred --------HHHHCCC----C---CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf --------3321014----4---333333100110000015789998875283368998651746356577875223576
Q gi|254781113|r 82 --------PHIGIVF----D---SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTIT 146 (226)
Q Consensus 82 --------~~~g~~~----~---~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~ 146 (226)
T Consensus 119 ~G~~n~~l~~~g~~~~~~~~~~~a~~~vi~~~vW~~~g~~~li~lagL~~Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p 198 (280)
T PRK10561 119 RGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP 198 (280)
T ss_pred CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEHHHHHH
T ss_conf 10899999865777754467489999999999999989999999999857997799999976997752331230461059
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4456778788987-5267999997699----999999999832357--79999999999999999999999999998621
Q gi|254781113|r 147 TSAVPLSSEFISI-LKSTSVASTITIP----EIFQTAQRIVSTTYQ--PLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 147 ~ilp~l~~~~i~l-ik~tsl~s~ig~~----el~~~a~~i~~~~~~--~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
T Consensus 199 ~~~~~~i~~~i~~~~~~f~~i~~~t~GGP~~~t~~l~~~iy~~~f~~~~~g~asA~svil~~i~~~~~~i~~r~~~rkv~ 278 (280)
T PRK10561 199 VSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVR 278 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99999999999999965688864368888528899999999999875996199999999999999999999999832112
Q ss_pred C
Q ss_conf 3
Q gi|254781113|r 220 H 220 (226)
Q Consensus 220 ~ 220 (226)
T Consensus 279 y 279 (280)
T PRK10561 279 Y 279 (280)
T ss_pred C
T ss_conf 4