HHsearch alignment for GI: 254781113 and conserved domain: PRK11365
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional.
Probab=99.91 E-value=1.7e-22 Score=142.25 Aligned_cols=195 Identities=16% Similarity=0.202 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999999999999999999999999706763799999999999855532222--22111223332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ--LFVIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~--l~~~~f~~~~~g~~~~~~~~ 93 (226)
T Consensus 57 ~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~--g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g~~~~i------ 128 (263)
T PRK11365 57 ELWQHLAISSWRALIGFSIGGSLGLILGLIS--GLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKI------ 128 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH------
T ss_conf 5999999999999999999999999999999--98699998758599999765799999999999715742044------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q ss_conf 3310011000001578999887528336899865174635657787522357644567787889875267999----997
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA----STI 169 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~----s~i 169 (226)
T Consensus 129 --~~i~~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~ 206 (263)
T PRK11365 129 --FLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS 206 (263)
T ss_pred --HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf --788651042889999888754999999999872999999999989800688999999999999999999999984469
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 69999999999983235779999999999999999999999999998621374788
Q gi|254781113|r 170 TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVD 225 (226)
Q Consensus 170 g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~~ 225 (226)
T Consensus 207 GLG~~i~~a~~~----~~~~~v~a-~ii~i~llg~~l~~~~~~lerrll~W~~~~~ 257 (263)
T PRK11365 207 GIGYLAMNAREF----LQTDVVVV-AIILYALLGKLADVSAQLLERLWLRWNPAYH 257 (263)
T ss_pred CHHHHHHHHHHH----HCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 888999999987----06889999-9999999999999999999999388885634