HHsearch alignment for GI: 254781113 and conserved domain: TIGR00974

>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.89  E-value=2.2e-21  Score=136.20  Aligned_cols=204  Identities=20%  Similarity=0.205  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHCCC
Q ss_conf             999999999999999999999999999999997-067637999999999998555322222211-12233----321014
Q gi|254781113|r   15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRI-FFSDTIISLIMHFYVWIFRGTPLLVQLFVI-FYGLP----HIGIVF   88 (226)
Q Consensus        15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~-~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~-~f~~~----~~g~~~   88 (226)
T Consensus        57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~~~  136 (302)
T TIGR00974        57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGGGF  136 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             53367799999999999999999999988875530678940056878888752116999999999999977686452206


Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf             4333333-1001100000157899988752833689986517463565778752235764456778788987526799-9
Q gi|254781113|r   89 DSFVAII-ISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSV-A  166 (226)
Q Consensus        89 ~~~~~~i-i~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl-~  166 (226)
T Consensus       137 S~l-aG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl  215 (302)
T TIGR00974       137 SAL-AGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLL  215 (302)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             778-7999999999999999998999972478888999972600211332244131036899999999999999899999


Q ss_pred             HH-HHHHH--------------------H-------HHHHHHHHHC----CCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99-76999--------------------9-------9999999832----3577--999999999999999999999999
Q gi|254781113|r  167 ST-ITIPE--------------------I-------FQTAQRIVST----TYQP--LIIYCELAFVYLILTSFCYIIQIK  212 (226)
Q Consensus       167 s~-ig~~e--------------------l-------~~~a~~i~~~----~~~~--~~~~~~~~~i~l~i~~~~~~l~~~  212 (226)
T Consensus       216 ~TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~~  295 (302)
T TIGR00974       216 FTAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIARL  295 (302)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998877641035667776777775422576413688888764014678842688899999999999999999999999


Q ss_pred             HHHHHHH
Q ss_conf             9998621
Q gi|254781113|r  213 IESSVTQ  219 (226)
Q Consensus       213 lerr~~~  219 (226)
T Consensus       296 ~~~~~~~  302 (302)
T TIGR00974       296 LRRRFKK  302 (302)
T ss_pred             HHHHHCC
T ss_conf             9975249