HHsearch alignment for GI: 254781113 and conserved domain: TIGR00974
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.89 E-value=2.2e-21 Score=136.20 Aligned_cols=204 Identities=20% Similarity=0.205 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHCCC
Q ss_conf 999999999999999999999999999999997-067637999999999998555322222211-12233----321014
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRI-FFSDTIISLIMHFYVWIFRGTPLLVQLFVI-FYGLP----HIGIVF 88 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~-~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~-~f~~~----~~g~~~ 88 (226)
T Consensus 57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~~~ 136 (302)
T TIGR00974 57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGGGF 136 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53367799999999999999999999988875530678940056878888752116999999999999977686452206
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 4333333-1001100000157899988752833689986517463565778752235764456778788987526799-9
Q gi|254781113|r 89 DSFVAII-ISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSV-A 166 (226)
Q Consensus 89 ~~~~~~i-i~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl-~ 166 (226)
T Consensus 137 S~l-aG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl 215 (302)
T TIGR00974 137 SAL-AGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLL 215 (302)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778-7999999999999999998999972478888999972600211332244131036899999999999999899999
Q ss_pred HH-HHHHH--------------------H-------HHHHHHHHHC----CCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-76999--------------------9-------9999999832----3577--999999999999999999999999
Q gi|254781113|r 167 ST-ITIPE--------------------I-------FQTAQRIVST----TYQP--LIIYCELAFVYLILTSFCYIIQIK 212 (226)
Q Consensus 167 s~-ig~~e--------------------l-------~~~a~~i~~~----~~~~--~~~~~~~~~i~l~i~~~~~~l~~~ 212 (226)
T Consensus 216 ~TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~~ 295 (302)
T TIGR00974 216 FTAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIARL 295 (302)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998877641035667776777775422576413688888764014678842688899999999999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9998621
Q gi|254781113|r 213 IESSVTQ 219 (226)
Q Consensus 213 lerr~~~ 219 (226)
T Consensus 296 ~~~~~~~ 302 (302)
T TIGR00974 296 LRRRFKK 302 (302)
T ss_pred HHHHHCC
T ss_conf 9975249