Query gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 226
No_of_seqs 117 out of 6342
Neff 7.4
Searched_HMMs 39220
Date Mon May 30 07:21:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781113.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09494 glnP glutamine ABC tr 100.0 0 0 361.1 23.7 215 1-218 1-217 (219)
2 COG0765 HisM ABC-type amino ac 100.0 0 0 354.9 22.5 219 1-221 1-222 (222)
3 PRK11123 arginine transporter 100.0 0 0 349.5 21.8 211 11-223 2-236 (238)
4 PRK11122 artM arginine transpo 100.0 0 0 334.4 22.2 210 10-223 2-221 (222)
5 TIGR03003 ectoine_ehuD ectoine 100.0 0 0 339.3 13.4 214 2-217 2-218 (218)
6 COG4160 ArtM ABC-type arginine 100.0 0 0 312.0 12.8 217 1-222 1-227 (228)
7 COG4215 ArtQ ABC-type arginine 100.0 0 0 298.9 18.0 212 11-223 4-229 (230)
8 TIGR03004 ectoine_ehuC ectoine 100.0 0 0 293.9 19.6 210 13-223 3-214 (216)
9 PRK10782 DL-methionine transpo 100.0 9.8E-45 0 264.3 20.5 207 13-220 5-217 (217)
10 COG4597 BatB ABC-type amino ac 100.0 2.5E-38 6.4E-43 229.2 7.6 212 10-222 82-397 (397)
11 COG2011 AbcD ABC-type metal io 100.0 5.5E-31 1.4E-35 188.9 18.5 207 12-220 9-222 (222)
12 PRK10971 sulfate/thiosulfate t 99.9 1.2E-25 3.1E-30 159.5 18.8 207 15-223 54-276 (277)
13 TIGR03226 PhnU 2-aminoethylpho 99.9 6.7E-25 1.7E-29 155.4 15.0 205 15-220 88-311 (312)
14 PRK09497 potB spermidine/putre 99.9 8.1E-25 2.1E-29 155.0 15.3 207 15-222 59-283 (285)
15 PRK11602 cysW sulfate/thiosulf 99.9 2.2E-24 5.5E-29 152.7 16.8 205 16-222 61-281 (291)
16 PRK10592 putrescine transporte 99.9 2.3E-24 5.8E-29 152.5 16.9 205 15-221 59-271 (281)
17 COG1177 PotC ABC-type spermidi 99.9 5.1E-24 1.3E-28 150.6 17.0 211 2-216 50-261 (267)
18 COG0581 PstA ABC-type phosphat 99.9 3.1E-23 7.9E-28 146.3 19.4 204 16-220 68-291 (292)
19 COG1174 OpuBB ABC-type proline 99.9 7.4E-23 1.9E-27 144.2 20.7 197 14-220 21-217 (221)
20 PRK09500 potC spermidine/putre 99.9 1.6E-23 4E-28 148.0 17.0 211 3-219 44-257 (257)
21 PRK11275 pstC phosphate transp 99.9 5.9E-23 1.5E-27 144.8 19.5 205 17-221 71-316 (319)
22 PRK09421 modB molybdate ABC tr 99.9 1E-22 2.6E-27 143.5 19.2 205 16-221 6-227 (229)
23 PRK10160 taurine transporter s 99.9 7.1E-23 1.8E-27 144.3 18.4 195 16-225 75-275 (275)
24 COG0600 TauC ABC-type nitrate/ 99.9 5E-23 1.3E-27 145.2 17.5 200 10-224 51-257 (258)
25 PRK10952 glycine betaine trans 99.9 5.4E-23 1.4E-27 145.0 16.8 197 17-225 141-341 (354)
26 COG3639 ABC-type phosphate/pho 99.9 3.9E-22 1E-26 140.3 19.6 196 15-219 85-283 (283)
27 PRK11365 ssuC alkanesulfonate 99.9 1.7E-22 4.3E-27 142.3 17.7 195 16-225 57-257 (263)
28 COG1178 ThiP ABC-type Fe3+ tra 99.9 6.4E-22 1.6E-26 139.1 18.9 200 15-216 52-266 (540)
29 COG4176 ProW ABC-type proline/ 99.9 8.4E-23 2.1E-27 143.9 14.4 195 16-223 89-287 (290)
30 PRK10683 putrescine transporte 99.9 2.5E-22 6.5E-27 141.3 16.8 201 15-216 93-311 (317)
31 TIGR03255 PhnV 2-aminoethylpho 99.9 3.1E-22 7.8E-27 140.8 16.9 201 18-219 67-272 (272)
32 TIGR03416 ABC_choXWV_perm chol 99.9 2.8E-22 7.3E-27 141.0 16.7 153 16-178 83-237 (267)
33 TIGR01726 HEQRo_perm_3TM amino 99.9 1.9E-23 4.9E-28 147.5 7.6 96 16-112 4-99 (99)
34 PRK11268 pstA phosphate transp 99.9 1.6E-21 4E-26 137.0 17.4 199 16-216 78-292 (292)
35 PRK09433 thiP thiamine transpo 99.9 7.7E-21 2E-25 133.2 20.7 212 3-219 41-270 (536)
36 COG0573 PstC ABC-type phosphat 99.9 3E-21 7.7E-26 135.4 18.6 205 17-221 77-310 (310)
37 TIGR02138 phosphate_pstC phosp 99.9 1.6E-21 4.2E-26 136.9 17.0 202 17-218 69-317 (317)
38 TIGR00974 3a0107s02c phosphate 99.9 2.2E-21 5.5E-26 136.2 16.9 204 15-219 57-302 (302)
39 TIGR03262 PhnU2 putative 2-ami 99.9 1.7E-20 4.2E-25 131.3 20.8 203 15-219 50-262 (546)
40 cd06261 TM_PBP2 Transmembrane 99.9 6E-21 1.5E-25 133.8 15.5 151 21-172 1-154 (190)
41 TIGR03262 PhnU2 putative 2-ami 99.9 1.3E-20 3.3E-25 131.9 15.1 210 16-225 329-544 (546)
42 COG1175 UgpA ABC-type sugar tr 99.8 3.4E-19 8.7E-24 124.1 18.5 205 15-221 64-294 (295)
43 TIGR02139 permease_CysT sulfat 99.8 2.1E-20 5.3E-25 130.8 11.5 200 5-220 39-265 (265)
44 COG1173 DppC ABC-type dipeptid 99.8 7.4E-19 1.9E-23 122.3 19.2 199 16-223 80-288 (289)
45 COG0555 CysU ABC-type sulfate 99.8 3.6E-20 9.1E-25 129.5 11.8 215 5-221 43-273 (274)
46 pfam00528 BPD_transp_1 Binding 99.8 1.1E-19 2.8E-24 126.9 13.8 176 35-222 1-182 (183)
47 PRK10561 glycerol-3-phosphate 99.8 4.3E-19 1.1E-23 123.6 15.8 209 10-220 41-279 (280)
48 PRK10999 malF maltose transpor 99.8 2.2E-19 5.5E-24 125.2 13.7 204 11-215 277-516 (520)
49 CHL00187 cysT sulfate transpor 99.8 2.5E-19 6.3E-24 124.9 13.0 147 15-162 49-206 (235)
50 TIGR01581 Mo_ABC_porter NifC-l 99.8 1.1E-18 2.8E-23 121.3 16.0 157 3-159 5-172 (226)
51 COG1176 PotB ABC-type spermidi 99.8 3.4E-18 8.8E-23 118.6 18.2 190 16-206 63-270 (287)
52 COG4149 ModC ABC-type molybdat 99.8 2.8E-19 7.1E-24 124.6 11.1 194 16-221 4-224 (225)
53 PRK09881 ATP-dependent peptide 99.8 5.2E-18 1.3E-22 117.6 17.3 199 16-224 88-296 (296)
54 TIGR01097 3A0109s02M phosphona 99.8 1.6E-18 4E-23 120.5 14.0 187 19-213 3-191 (192)
55 PRK09433 thiP thiamine transpo 99.8 3.6E-18 9.1E-23 118.5 15.0 205 15-220 325-535 (536)
56 COG1178 ThiP ABC-type Fe3+ tra 99.8 3.3E-18 8.3E-23 118.7 14.8 203 16-220 330-538 (540)
57 PRK10417 nikC nickel transport 99.8 1.3E-17 3.4E-22 115.4 17.2 199 16-224 61-269 (272)
58 TIGR00969 3a0106s02 sulfate AB 99.8 1.4E-18 3.6E-23 120.7 11.1 199 16-216 66-280 (280)
59 PRK10913 dipeptide transporter 99.8 1.9E-17 4.8E-22 114.6 16.6 197 16-222 93-299 (300)
60 TIGR02141 modB_ABC molybdate A 99.8 1.8E-17 4.6E-22 114.6 11.8 183 22-216 1-212 (212)
61 COG0395 UgpE ABC-type sugar tr 99.8 1.1E-15 2.8E-20 104.9 20.8 140 16-157 70-209 (281)
62 PRK10914 dipeptide transporter 99.7 4.1E-16 1E-20 107.2 16.6 205 15-221 90-339 (339)
63 PRK10352 nickel transporter pe 99.7 4.1E-16 1E-20 107.2 15.6 206 15-222 92-311 (314)
64 PRK09471 oppB oligopeptide tra 99.7 1E-15 2.6E-20 105.0 16.9 204 13-218 86-305 (306)
65 PRK10998 malG maltose transpor 99.7 4.2E-15 1.1E-19 101.6 17.4 144 17-162 81-229 (296)
66 COG0601 DppB ABC-type dipeptid 99.7 9.8E-15 2.5E-19 99.6 18.7 205 14-220 88-316 (317)
67 COG3833 MalG ABC-type maltose 99.7 1.7E-14 4.4E-19 98.3 18.2 201 16-218 70-276 (282)
68 PRK10973 glycerol-3-phosphate 99.7 6.1E-14 1.6E-18 95.3 20.1 142 17-162 73-214 (281)
69 TIGR02790 nickel_nikC nickel A 99.6 1.5E-14 3.8E-19 98.6 14.7 191 17-217 57-257 (258)
70 COG4209 LplB ABC-type polysacc 99.6 1.7E-13 4.3E-18 92.9 14.0 194 17-219 77-305 (309)
71 TIGR02140 permease_CysW sulfat 99.5 6.7E-13 1.7E-17 89.6 10.8 188 17-218 45-274 (275)
72 COG4239 ABC-type uncharacteriz 99.4 1.3E-11 3.4E-16 82.4 15.9 189 17-219 136-337 (341)
73 TIGR02789 nickel_nikB nickel A 99.4 1.8E-12 4.5E-17 87.3 11.2 205 15-221 93-311 (315)
74 COG4208 CysW ABC-type sulfate 99.4 1.3E-11 3.3E-16 82.5 13.1 208 16-226 62-286 (287)
75 COG4132 ABC-type uncharacteriz 99.3 5.6E-09 1.4E-13 68.0 20.6 204 11-219 48-279 (282)
76 COG4590 ABC-type uncharacteriz 99.1 7.5E-10 1.9E-14 72.8 10.3 202 19-223 430-732 (733)
77 COG4986 ABC-type anion transpo 99.1 2.5E-10 6.3E-15 75.5 7.6 124 17-149 7-138 (523)
78 COG4662 TupA ABC-type tungstat 99.0 4.8E-08 1.2E-12 62.9 16.0 199 15-216 19-227 (227)
79 TIGR01253 thiP thiamine/thiami 98.8 2.9E-07 7.5E-12 58.6 13.8 205 2-218 33-262 (519)
80 COG4168 SapB ABC-type antimicr 98.7 1.2E-07 3E-12 60.8 9.4 146 15-160 68-253 (321)
81 COG4171 SapC ABC-type antimicr 98.6 8.1E-07 2.1E-11 56.2 11.7 143 18-172 92-240 (296)
82 COG4986 ABC-type anion transpo 98.5 3.2E-06 8E-11 52.9 12.3 141 10-156 309-450 (523)
83 TIGR01183 ntrB nitrate ABC tra 98.5 8.1E-06 2.1E-10 50.7 14.2 128 17-154 15-144 (203)
84 COG4135 ABC-type uncharacteriz 98.5 7.7E-06 2E-10 50.8 12.9 138 11-157 341-481 (551)
85 TIGR01253 thiP thiamine/thiami 98.5 1.5E-05 3.8E-10 49.2 14.3 190 15-207 319-516 (519)
86 COG4174 ABC-type uncharacteriz 98.3 9.2E-08 2.4E-12 61.3 -0.1 206 15-222 126-363 (364)
87 pfam03649 UPF0014 Uncharacteri 97.2 0.012 3E-07 33.3 14.2 165 14-191 35-217 (250)
88 PRK10782 DL-methionine transpo 95.8 0.12 3E-06 27.8 16.6 201 1-216 1-217 (217)
89 COG4135 ABC-type uncharacteriz 95.2 0.18 4.7E-06 26.8 14.8 129 20-150 53-206 (551)
90 PRK10592 putrescine transporte 94.5 0.3 7.5E-06 25.6 11.7 43 3-45 49-93 (281)
91 COG0390 ABC-type uncharacteriz 93.6 0.45 1.1E-05 24.6 13.3 65 90-156 126-190 (256)
92 TIGR01478 STEVOR variant surfa 82.3 3.3 8.3E-05 19.9 6.4 29 188-216 272-300 (315)
93 pfam02954 HTH_8 Bacterial regu 77.6 3.4 8.6E-05 19.8 3.8 32 108-139 8-39 (42)
94 TIGR01817 nifA Nif-specific re 71.8 5 0.00013 18.9 3.4 31 110-140 535-565 (574)
95 TIGR02974 phageshock_pspF psp 66.1 5.9 0.00015 18.5 2.8 34 101-134 308-341 (349)
96 PTZ00042 stevor; Provisional 60.3 12 0.00029 16.9 4.0 45 170-217 246-290 (304)
97 PRK11111 hypothetical protein; 46.3 20 0.00051 15.6 6.6 22 200-221 160-181 (214)
98 TIGR02885 spore_sigF RNA polym 44.1 11 0.00029 16.9 1.3 17 119-135 200-216 (231)
99 TIGR01402 fliQ flagellar biosy 43.1 22 0.00057 15.3 8.2 56 12-76 5-60 (88)
100 PRK10503 multidrug efflux syst 42.1 23 0.00059 15.2 12.4 20 204-223 1020-1039(1040)
101 PRK11608 pspF phage shock prot 39.9 25 0.00064 15.0 3.8 27 112-138 293-319 (325)
102 COG4956 Integral membrane prot 39.3 26 0.00066 15.0 7.4 51 22-82 78-128 (356)
103 TIGR01311 glycerol_kin glycero 36.9 17 0.00042 16.0 1.2 42 94-137 378-426 (518)
104 PRK01844 hypothetical protein; 33.6 32 0.00082 14.4 3.7 24 21-44 3-26 (72)
105 TIGR00776 RhaT RhaT L-rhamnose 32.9 33 0.00084 14.4 3.0 56 91-156 165-223 (336)
106 PRK05700 fliQ flagellar biosyn 32.7 33 0.00085 14.4 8.3 34 14-47 7-40 (89)
107 pfam02687 FtsX Predicted perme 30.9 36 0.00091 14.2 9.5 27 119-145 80-106 (174)
108 COG1987 FliQ Flagellar biosynt 29.0 39 0.00098 14.0 8.4 34 14-47 7-40 (89)
109 pfam02405 DUF140 Domain of unk 28.6 39 0.001 14.0 11.5 47 89-142 59-105 (215)
110 COG0767 Ttg2B ABC-type transpo 25.0 46 0.0012 13.6 8.2 48 89-143 106-153 (267)
111 COG3641 PfoR Predicted membran 24.9 46 0.0012 13.6 6.2 99 122-223 236-342 (348)
112 pfam07234 DUF1426 Protein of u 23.3 50 0.0013 13.4 2.8 11 53-63 41-51 (117)
113 PRK01905 DNA-binding protein F 21.3 54 0.0014 13.2 2.8 26 109-134 41-66 (77)
114 pfam03342 Rhabdo_M1 Rhabdoviru 21.3 43 0.0011 13.7 1.1 26 115-140 145-170 (219)
115 COG1342 Predicted DNA-binding 21.1 55 0.0014 13.1 2.2 41 112-154 40-83 (99)
No 1
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=100.00 E-value=0 Score=361.06 Aligned_cols=215 Identities=30% Similarity=0.570 Sum_probs=208.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97308999999999999999999999999999999999999999997067637999999999998555322222211122
Q gi|254781113|r 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYG 80 (226)
Q Consensus 1 m~~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~ 80 (226)
|+||| +.+++.+|.+ ++|+++|+.+++.+.++|+++|+++|..| .+++++++.+.+.|++++||+|.+++++++||+
T Consensus 1 M~fdw-~~i~~~~p~l-l~Gl~~Tl~l~~~s~~~g~~lG~~~a~~r-~~~~~~l~~~~~~yv~~~RgtPlLv~lf~~yfg 77 (219)
T PRK09494 1 MQFDW-SAIWPAIPLL-LEGAKMTLWISVLGLAGGLVIGLLAGFAR-AYGGWIANHIALVFIELIRGTPIVVQVMFIYFA 77 (219)
T ss_pred CCCCH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 97879-9999989999-99999999999999999999999999999-889689999999999999764899999999998
Q ss_pred HHHH--HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3332--10144333333100110000015789998875283368998651746356577875223576445677878898
Q gi|254781113|r 81 LPHI--GIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFIS 158 (226)
Q Consensus 81 ~~~~--g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~ 158 (226)
+|.. |...|+++++++++++++++|++|++|+|+++||+||.|||+++|+|++|++|||++|||++.++|+++|+++.
T Consensus 78 lp~l~~~i~~~~~~~~vi~l~l~~~Ay~aEi~R~gi~sVp~GQ~EAA~alG~s~~q~~r~IilPQa~r~~lP~l~n~~i~ 157 (219)
T PRK09494 78 LPMAFNDLRIDPFSAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWII 157 (219)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99854677748999999999999999999999999998318799999885989888989646998799988788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 752679999976999999999998323577999999999999999999999999999862
Q gi|254781113|r 159 ILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVT 218 (226)
Q Consensus 159 lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~ 218 (226)
++||||++++||+.|+++.+|++.+.+++++|.|..++++|+++|.+++.+.+++|||++
T Consensus 158 liK~Tsl~s~Igv~El~~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~l~~~~~~lErrl~ 217 (219)
T PRK09494 158 SIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMK 217 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999879999998999999999999710718999999999999999999999999998771
No 2
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=354.90 Aligned_cols=219 Identities=39% Similarity=0.706 Sum_probs=206.9
Q ss_pred CCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97308999--9999999999999999999999999999999999999970676379999999999985553222222111
Q gi|254781113|r 1 MKYEWFNL--IIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIF 78 (226)
Q Consensus 1 m~~~w~~~--~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~ 78 (226)
+++||... ..+ +...+++|+++|+.+++++.++|+++|+.+|++| .+++++++.+...|+|++||+|.+++++++|
T Consensus 1 ~~~~~~~~~~~~~-~~~~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r-~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~y 78 (222)
T COG0765 1 YDFDFGALLLNLD-YLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMR-LSGNKPLRWLARAYVEIFRGTPLLVQLFFIY 78 (222)
T ss_pred CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9641888873565-5899999999999999999999999999999999-7784789999999887761741999999999
Q ss_pred HH-HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22-33321014433333310011000001578999887528336899865174635657787522357644567787889
Q gi|254781113|r 79 YG-LPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFI 157 (226)
Q Consensus 79 f~-~~~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i 157 (226)
|+ +|..|+..+++.++++++++++++|++|++|+|+++|||||+|||+++|+|++|++|+|++|||+|.++|+++|+++
T Consensus 79 fg~lp~~gi~~~~~~aavial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~~i 158 (222)
T COG0765 79 FGLLPLLGIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFI 158 (222)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHH
T ss_conf 98579844677799999999999999999999999996188868999998599986686630023569986517689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8752679999976999999999998323577999999999999999999999999999862137
Q gi|254781113|r 158 SILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 158 ~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~ 221 (226)
.++||||++|+||+.|+++.+|++.++++++++.|..++++|+++|.+++.+.+++|||+++++
T Consensus 159 ~liK~TSl~svIgv~EL~~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~ls~~~~~lErr~~~~~ 222 (222)
T COG0765 159 SLIKDTSLVSVIGVVELTRAAQIIAARTFRPFEVYLLAALIYLILCLPLSLLSRRLERRLARYG 222 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999829999998999999999999866517999999999999999999999999998852379
No 3
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=100.00 E-value=0 Score=349.51 Aligned_cols=211 Identities=23% Similarity=0.448 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf 99999999999999999999999999999999999970676379999999999985553222222111223332------
Q gi|254781113|r 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHI------ 84 (226)
Q Consensus 11 ~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~------ 84 (226)
+++|.+ .+|+++|+.+++++.++|+++|+++|++| .+++++++.+...|++++||+|.+++++++||++|..
T Consensus 2 n~f~~L-l~G~~~Tl~l~~~a~~~g~~lG~~la~~r-~s~~~~l~~~~~~yv~~~RgtP~lv~l~~~yfg~p~l~~~l~~ 79 (238)
T PRK11123 2 NEFFPL-ASAAGMTVGLAVCALIVGLALAMFFAVWE-SAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLLLTLSD 79 (238)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 847999-99999999999999999999999999999-8886889999999999991675999999999952898876310
Q ss_pred ------------------HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf ------------------10144333333100110000015789998875283368998651746356577875223576
Q gi|254781113|r 85 ------------------GIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTIT 146 (226)
Q Consensus 85 ------------------g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~ 146 (226)
+...++++++++++++++++|++|++|+|+++||+||.|||+++|+|++|++|||++|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~f~~avial~l~~~Ay~aEi~R~gi~sVp~GQ~EAa~alGms~~q~~r~IilPQa~r 159 (238)
T PRK11123 80 GFTLNLGFVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWR 159 (238)
T ss_pred HHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 00001001110100121345646999999999999999999999999983999999999984989999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 44567787889875267999997699999999999832357799999999999999999999999999986213747
Q gi|254781113|r 147 TSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 147 ~ilp~l~~~~i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226)
.++|+++|+++.++||||++++||+.|+++.+|++.++++++++.|..++++|+++|.+++.+.+++|||++|++|+
T Consensus 160 ~~lP~l~n~~i~liK~TSL~s~Igv~El~~~a~~i~~~t~~~~e~y~~~a~iYlii~~~l~~~~~~lEkR~~r~~rr 236 (238)
T PRK11123 160 HALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIDLRFTRFERR 236 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99738999999999984999999899999999999971345699999999999999999999999999985422578
No 4
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=100.00 E-value=0 Score=334.39 Aligned_cols=210 Identities=26% Similarity=0.558 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 999999999999999999999999999999999999970676379999999999985553222222111223332-----
Q gi|254781113|r 10 IDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHI----- 84 (226)
Q Consensus 10 ~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~----- 84 (226)
.|.+|++ ++|+++|+.+++++.++|+++|+++|+.| .+++++++.+.+.|++++||+|.+++++++|||.+..
T Consensus 2 le~~P~l-l~G~~~Tl~l~~~s~~~~~~lG~~la~~r-~~~~~~l~~~~~~yv~~~Rg~PlLv~lf~~yfg~~~~~~l~~ 79 (222)
T PRK11122 2 LEYLPEL-LKGLHTSLTLTVASLLVALVLALIFTIIL-TLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQE 79 (222)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7469999-99999999999999999999999999999-879778999999999999564699999999981488877750
Q ss_pred -----HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----101443333331001100000157899988752833689986517463565778752235764456778788987
Q gi|254781113|r 85 -----GIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISI 159 (226)
Q Consensus 85 -----g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~l 159 (226)
+...++++++++++++++++|++|++|+|+++|||||.|||+++|+|++|++| |++|||+|.++|++.|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~viaL~l~~~Ay~aEi~R~gi~sV~~GQ~EAA~slGls~~q~~r-IilPQa~r~~lP~l~n~~i~l 158 (222)
T PRK11122 80 YPWLWHLLSQPWLCAMLALALNSAAYSTQLFYGAIRAIPEGQWQSCSALGMSKKQTLA-ILLPYAFKRALSSYSNEVVLV 158 (222)
T ss_pred CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 3035320225999999999999999999999999960998799999986989999999-899999999866889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5267999997699999999999832357799999999999999999999999999986213747
Q gi|254781113|r 160 LKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 160 ik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226)
+||||++++||+.|+++.+|++.+++|++. .|..++++|+++|.+++.+.+++|||..||+|+
T Consensus 159 iK~TsL~s~Igv~El~~~a~~i~~~t~~~~-~y~~~a~~Y~~i~~~~~~~~~~lErR~~~~~rr 221 (222)
T PRK11122 159 FKGTSLAYTITLMDVMGYSQLLYGRTYDVM-VFGAAGIIYLVVNGLLTLLMRLIERKALAFERR 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 998499999989999999999997416099-999999999999999999999999987655335
No 5
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons..
Probab=100.00 E-value=0 Score=339.26 Aligned_cols=214 Identities=32% Similarity=0.606 Sum_probs=207.3
Q ss_pred CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 730---89999999999999999999999999999999999999999970676379999999999985553222222111
Q gi|254781113|r 2 KYE---WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIF 78 (226)
Q Consensus 2 ~~~---w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~ 78 (226)
||| |-.+..+-.|+++ .|+.+|+..+..|.+++.++|+++|+.| ++..++++++....+|++|++|++||+|++|
T Consensus 2 dW~tttWity~~qilP~l~-~gl~~Ti~atalGfaiA~VlGLvfAilR-rsa~~~Iswp~~~vvEFiR~TPLLvQlyFly 79 (218)
T TIGR03003 2 DWETTTWITYVIQILPELL-EGLKVTIKATALGFAIALVLGLVFAILR-RSARKLISWPTAVVVEFIRDTPLLVQLYFLY 79 (218)
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEHEEEEEEECCCCHHHHHHHHH
T ss_conf 7643689999999999999-9999999999999999999999998875-2156310100100465205680899999999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22333210144333333100110000015789998875283368998651746356577875223576445677878898
Q gi|254781113|r 79 YGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFIS 158 (226)
Q Consensus 79 f~~~~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~ 158 (226)
|.+|+.|+.++.+..|+++++++.++|.+|++|+|+|+||+||+|||+|+-+|+.|++|+|++|||+|.++|++.|..+.
T Consensus 80 YVLP~~Gi~LpA~~~GvlglGlhYa~Y~aEVYR~G~eaVprGQWEAa~AlNlt~~~tyr~iIlPQAippi~Pa~gNYLvA 159 (218)
T TIGR03003 80 YVLPDYGISLPALLVGVLGLGLHYAAYAAEVYRAGLEAVPRGQWEAATALNLTARQTYRDIILPQAIPPIVPALGNYLVA 159 (218)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 88302333137999989998888998888888631025887616899985233544576510222100110045789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75267999997699999999999832357799999999999999999999999999986
Q gi|254781113|r 159 ILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217 (226)
Q Consensus 159 lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~ 217 (226)
|+|||.+.|+|.+-|+|.+||.++++||+++++...++++|+++++++....+|+|+|+
T Consensus 160 M~KeTPvLSaiTVlE~M~~Ak~Ig~~tfrYleP~TlVGvfFL~lsii~~~~lrrlearl 218 (218)
T TIGR03003 160 MLKETPVLSAITVLELMNQAKSIGEETFRYLEPLTLVGVFFLLLSIILAFLLRRLEARL 218 (218)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97327446889999999988888624651044078999999999999999999998619
No 6
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=312.01 Aligned_cols=217 Identities=36% Similarity=0.644 Sum_probs=204.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97308999999999999999999999999999999999999999997067637999999999998555322222211122
Q gi|254781113|r 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYG 80 (226)
Q Consensus 1 m~~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~ 80 (226)
|+||| ..+..|.. ++|++.|+.+.+++.++|.+++++++++|. ++|++++.+...|+.+|||+|++||+|++|+|
T Consensus 1 ~~w~~---~~~~~p~~-l~Gl~~TL~Ll~~S~~iG~~LAvpla~~r~-s~~~~v~~~a~~y~~~fRGTPLLvQlfLiYyG 75 (228)
T COG4160 1 MYWDW---FLEYLPRL-LSGLATTLWLLIISLVIGFVLALPLALARV-SKNRWVSWPARAYTYVFRGTPLLVQLFLIYYG 75 (228)
T ss_pred CCCHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEHHHHHEEEEEECCCHHHHHHHHHHHC
T ss_conf 97507---99987999-731999999999999999999999999997-28850011125014565387499999999946
Q ss_pred HHHHHC----------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 333210----------1443333331001100000157899988752833689986517463565778752235764456
Q gi|254781113|r 81 LPHIGI----------VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAV 150 (226)
Q Consensus 81 ~~~~g~----------~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp 150 (226)
++.+.. .-++|.++++++++|+++|.+|++||++++||+||+|||+++|||++|++|||++|+|++.++|
T Consensus 76 lgqf~~ir~s~~lW~~lr~~w~Ca~lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Alr~ALp 155 (228)
T COG4160 76 LGQFEWIRESIFLWPFLREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSALRRALP 155 (228)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 43146888406658998252889999999977999999998898528941789999819629999999997799998462
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 778788987526799999769999999999983235779999999999999999999999999998621374
Q gi|254781113|r 151 PLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 151 ~l~~~~i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
+..|+.|.++|+|++++++.+.|+++.++.+.+++|++++.|..++++|++++..+..+.+++|+|+.+|.+
T Consensus 156 ~YsNEvILmlK~Tala~tiTv~Dl~g~ar~i~~~Ty~~~~~f~~ag~iYl~it~il~~~~r~~E~r~~~~~~ 227 (228)
T COG4160 156 AYSNEVILMLKSTALASTITVMDLMGYARLINSRTYDPYEVFGIAGAIYLIITGILTLLFRLIERRWLAHLR 227 (228)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 458837999834415434139999999999999776899999999999999999999999999998763126
No 7
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=298.91 Aligned_cols=212 Identities=28% Similarity=0.506 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf 99999999999999999999999999999999999970676379999999999985553222222111223332------
Q gi|254781113|r 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHI------ 84 (226)
Q Consensus 11 ~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~------ 84 (226)
++|.+.+..|.++|+.+++.+.+++.++|+..|.++ .+++|+++.+...|+.++|++|.+++++++|||.+..
T Consensus 4 ~G~~~~l~~ga~~Tl~lAv~sl~lgl~lGl~~A~~k-ls~~r~lr~~~~~YtTv~RGvPELl~illiyfG~~~lL~~~~~ 82 (230)
T COG4215 4 AGWGDELLQGALVTLELAVCSLILGLLLGLLGALGK-LSKNRLLRLLGNVYTTVIRGVPELLLILLIYFGGQILLNTLAD 82 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 760799999999999999999999999999999998-6666067897543535542671999999999830999999998
Q ss_pred --------HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------101443333331001100000157899988752833689986517463565778752235764456778788
Q gi|254781113|r 85 --------GIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEF 156 (226)
Q Consensus 85 --------g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~ 156 (226)
.+.+|||.++++++++..++|..|.+|+++++||+||+||++++|+|++|+||||++||++|+++|++.|+|
T Consensus 83 ~~~~~g~~~idi~~FvaGviaL~~i~gAYatEt~RGA~~AVp~GQ~EAa~AlGms~~~~frrI~lPqm~R~ALPGlgN~W 162 (230)
T COG4215 83 VTGALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNLW 162 (230)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 73014777455674999999999999999899999999728965188999809987688999998889998278853026
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9875267999997699999999999832357799999999999999999999999999986213747
Q gi|254781113|r 157 ISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 157 i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226)
..++|||++.|+||++|++.++|.....|.+|+..|.+++++|+.++.+.+...+++|||.+|+-++
T Consensus 163 lvllKDTALVSvIGl~dl~~~a~~aa~~Tk~pFtfy~~aa~iYL~~t~vS~~~l~~lErr~~rg~~r 229 (230)
T COG4215 163 LVLLKDTALVSLIGLNDLMRQTQLAAGSTKEPFTFYIVAALIYLVITLVSNVVLLFLERRASRGFER 229 (230)
T ss_pred HHHHHCCHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7776300354211599999999987345555439999999999999999999999999985424257
No 8
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologues..
Probab=100.00 E-value=0 Score=293.86 Aligned_cols=210 Identities=29% Similarity=0.472 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCC
Q ss_conf 99999999999999999999999999999999997067637999999999998555322222211122333--2101443
Q gi|254781113|r 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPH--IGIVFDS 90 (226)
Q Consensus 13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~--~g~~~~~ 90 (226)
|-.++|+|.|+|+.+++.+.++++++++..|++|. ++.+.++.++-.|+|+|||+-.+||+||+||.+|. +|+.++|
T Consensus 3 ylpl~lQGAwVT~~iTl~gs~la~V~Af~aglgr~-s~~~~lr~~a~~YiE~FRGTSllVQLFW~yfvLPlPP~gl~l~P 81 (216)
T TIGR03004 3 YLPLLLQGAWVTLQITLAGSVLAVVVAFLAGLGRL-SRFRILRALAVVYIEVFRGTSLLVQLFWLYFVLPLPPIGLELDP 81 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 03579988999999999999999999999988752-35358877777875442037899999999997257999840251
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333100110000015789998875283368998651746356577875223576445677878898752679999976
Q gi|254781113|r 91 FVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170 (226)
Q Consensus 91 ~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig 170 (226)
...+++++++|.++|=||++||+++||.++|.||++++-++|.|++|||+||||++.++|+-+|..|.++|.||+.|.|+
T Consensus 82 ~t~gv~~Lglh~GaYGAEivRGA~~sv~~~Q~EAc~ALNftrfq~~rrI~LPQAl~~mmp~fgNlaIElLK~tslVSLIs 161 (216)
T TIGR03004 82 LTVGVLALGLHVGAYGAEIVRGAVKSVSKEQLEACIALNFTRFQALRRIVLPQALVEMMPAFGNLAIELLKLTSLVSLIS 161 (216)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999973265016888888997436589999984153677998763267999743866158999998789999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999832357799999999999999999999999999986213747
Q gi|254781113|r 171 IPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 171 ~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226)
+.|+++.||.+-+.|++....|....+.|++++..++...|++||+++|-+..
T Consensus 162 laDltF~Aq~~r~~T~~tl~~fa~~LL~YFvMa~~i~l~~R~lEr~v~RG~v~ 214 (216)
T TIGR03004 162 LADLTFRAQSVRALTLDTLKVFALILLLYFVMALIISLAMRVLERRVARGRVF 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98676999999984100279999999999999999999999886664067878
No 9
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=100.00 E-value=9.8e-45 Score=264.31 Aligned_cols=207 Identities=20% Similarity=0.294 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999999999------7067637999999999998555322222211122333210
Q gi|254781113|r 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIR------IFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI 86 (226)
Q Consensus 13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~------~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~ 86 (226)
.-.++++|+++|+.++++++++|+++|+++|+.. ...+|+.++.+.+.+++++|++|.++++++.++..+....
T Consensus 5 ~~~lll~g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~~~~~~~~g 84 (217)
T PRK10782 5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMIPFTRVIVG 84 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999999999732022443468999999999999506899999999999999844
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14433333310011000001578999887528336899865174635657787522357644567787889875267999
Q gi|254781113|r 87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 (226)
Q Consensus 87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~ 166 (226)
...++.++++++++++.||++|++|+|+++||++|+|||+++|+|+||++||+++|||+|.++|+..++++.++|+|+++
T Consensus 85 ~~~g~~aaiiaL~i~~~~~iar~~~~~i~~V~~g~~EAa~alG~s~~q~i~~viLPqAlp~ii~~~~~~~i~~i~~tsl~ 164 (217)
T PRK10782 85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG 164 (217)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66216899999999998999999999998399879999998398988994851079219999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 997699999999999832357799999999999999999999999999986213
Q gi|254781113|r 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 167 s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
+.+|.+|++..+++.+..+|+....+..+ +++++++..++.+.+++|||++||
T Consensus 165 g~IG~ggLG~~a~~~~~~~~~~~~~~~v~-~l~~ilv~~i~~~~~~l~k~~~~r 217 (217)
T PRK10782 165 GAVGAGGLGQIGYQYGYIGYNATVMNTVL-VLLVILVYLIQFAGDRIVRAVTHK 217 (217)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99810478999999999851510999999-999999999999999999986379
No 10
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-38 Score=229.18 Aligned_cols=212 Identities=27% Similarity=0.507 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--
Q ss_conf 999999999999999999999999999999999999970676379999999999985553222222111223----33--
Q gi|254781113|r 10 IDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL----PH-- 83 (226)
Q Consensus 10 ~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~----~~-- 83 (226)
.+.|+..++-|+.||+.+++.+.+.++++|++.|++|. +.|..+++++..|+|+|||+|.+.++|++||+. |.
T Consensus 82 ~~TYgra~~VGllNTl~Va~~gIi~atIiGfliGIaRL-S~NWLi~kl~~vYvEiFRNiPpLL~IfFWYf~Vl~~LP~ar 160 (397)
T COG4597 82 DSTYGRAFIVGLLNTLLVAALGIITATIIGFLIGIARL-SDNWLIRKLSTVYVEIFRNIPPLLQIFFWYFGVLSVLPGAR 160 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 88335788998898999999999999999999877772-31389999989999998268579999999999995288700
Q ss_pred ----------------------H---------------------------------------------------------
Q ss_conf ----------------------2---------------------------------------------------------
Q gi|254781113|r 84 ----------------------I--------------------------------------------------------- 84 (226)
Q Consensus 84 ----------------------~--------------------------------------------------------- 84 (226)
.
T Consensus 161 ~s~~l~~~~~L~nrG~~~p~P~~geG~~~~~lA~~~~I~~s~~~~r~ak~rQ~~TGq~~~~~~~~~~LiiglPll~~~~~ 240 (397)
T COG4597 161 QSVSLPDLIFLSNRGLYFPSPQWGEGFIAFILALVMAIVASVFLARWAKTRQIATGQQFRTWPTAAVLIIGLPLLAQWLF 240 (397)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHC
T ss_conf 01115630135256401477310365179999999999999999999887787507857623568899845088999972
Q ss_pred H-------------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 1-------------------014433333310011000001578999887528336899865174635657787522357
Q gi|254781113|r 85 G-------------------IVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTI 145 (226)
Q Consensus 85 g-------------------~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal 145 (226)
| ...|.+.+-.+++++++++|++|++|+|+++|+|||.|||+++|..+-++.|.|++|||+
T Consensus 241 G~pl~~d~P~~~~FNl~GG~~v~PEf~aL~laLs~YTaaFIAEiVRaGI~~VskGQtEAa~sLGL~~~~t~RlVivPQAl 320 (397)
T COG4597 241 GAPLTFDVPALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQAL 320 (397)
T ss_pred CCCCEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 89721205211443566870565789999999999999999999987650257661778986289975447999841101
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 64456778788987526799999769999999999983235779999999999999999999999999998621374
Q gi|254781113|r 146 TTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 146 ~~ilp~l~~~~i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
|.++|++++|+..+.|.||++-.||++|+...+-.+-+++-+..|.....-++|+.+++..+.++.+.++|+.-.+|
T Consensus 321 RiIIPPLTSQYLNLtKNSSLAiAIGYpDlv~vagT~lNQTGQAvEvv~i~m~vYL~lSL~tSl~MN~~N~rmalvER 397 (397)
T COG4597 321 RIIIPPLTSQYLNLTKNSSLAIAIGYPDLVAVAGTVLNQTGQAVEVVAIWMLVYLSLSLTTSLLMNWYNRRMALVER 397 (397)
T ss_pred EEECCCCCHHHHHHCCCCHHHHCCCCCCEEEEECEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 56417621888733235423200277766887330224556078999999999999999999999998765432049
No 11
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.5e-31 Score=188.89 Aligned_cols=207 Identities=20% Similarity=0.333 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 99999999999999999999999999999999999------70676379999999999985553222222111-223332
Q gi|254781113|r 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIR------IFFSDTIISLIMHFYVWIFRGTPLLVQLFVIF-YGLPHI 84 (226)
Q Consensus 12 ~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~------~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~-f~~~~~ 84 (226)
...+.++.+.+.|+++...+++++.++|+++|+.. ...+|+....+....++++|++|.++++.... +.--..
T Consensus 9 ~~~~~l~~a~~eTlyMv~~s~~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv~liP~Tr~iv 88 (222)
T COG2011 9 DLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVALIPLTRLIV 88 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 57999999999999999999999999987663436781788613008899999999998751209999999998899997
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10144333333100110000015789998875283368998651746356577875223576445677878898752679
Q gi|254781113|r 85 GIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164 (226)
Q Consensus 85 g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ts 164 (226)
|-+. +-.+++..+++-..||.++++.+++++||+|.+|||+++|+|+||+.+|+.+|.++|.++.+++...+.++..|+
T Consensus 89 GTsi-G~~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~kVlLpEa~p~li~g~Tvt~I~LIg~SA 167 (222)
T COG2011 89 GTSI-GTTAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSA 167 (222)
T ss_pred HCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2652-530477416788888999999999974472589999984998888878732621367899889999999980888
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99997699999999999832357799999999999999999999999999986213
Q gi|254781113|r 165 VASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 165 l~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
.++.+|.+.+...+.+.+.+.|++-. .....++.++++..+-.+.+++-||++||
T Consensus 168 MAGaIGgGGLGdlAiryGY~Rf~~~V-m~~~viillilVq~iQ~~Gd~l~~r~~kr 222 (222)
T COG2011 168 MAGAIGGGGLGDLAIRYGYQRFNTDV-MVVAVVILLILVQLIQSLGDRLVRRLDKR 222 (222)
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 83022667336999998788558831-57999999999999999989999997149
No 12
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=1.2e-25 Score=159.50 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Q ss_conf 99999999999999999999999999999999706763799999999999855532222221112233----------32
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLP----------HI 84 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~----------~~ 84 (226)
..+++++++|+.+++.++++++++|+++|....+.+.+ .+...+..+...-.+|..+..+.+...++ ..
T Consensus 54 p~~~~al~nTl~ia~~~t~i~~vlG~~~A~~l~r~~f~-gr~~l~~l~~lP~~iP~~V~g~~~~~lf~~~G~~~~~l~~~ 132 (277)
T PRK10971 54 PQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFP-GRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKF 132 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 88999999999999999999999999999999915887-38999999999999899999999999846654266789975
Q ss_pred HCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1014-433333310011000001578999887528336899865174635657787522357644567787889875267
Q gi|254781113|r 85 GIVF-DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKST 163 (226)
Q Consensus 85 g~~~-~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~t 163 (226)
|... ..+.+.+++..+...||+...++++++++|++++|||+.+|+|+||++|||++|+..|.++.+..-.++..++|-
T Consensus 133 gi~~~~~~~giii~~~~~~~Pf~~~~~~a~l~~id~~leEAA~~lGAs~~~~f~~V~lPll~P~i~~g~ll~F~~s~~~f 212 (277)
T PRK10971 133 DIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEF 212 (277)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96410129999999999998999998789998489999999986499865730410398579999999999999999876
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999997699-----999999999832357799999999999999999999999999986213747
Q gi|254781113|r 164 SVASTITIP-----EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 164 sl~s~ig~~-----el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226)
.....+|.+ +..........++++ .....+.+.+.++++..+..+.++++||..||..+
T Consensus 213 ~~~~~l~G~~~~~t~tl~~~iy~~~~~~d-~~~a~Als~ill~~sli~~~~~~~l~~R~~Rr~~g 276 (277)
T PRK10971 213 GAVIFIAGNIAWKTEVTSLMIFVRLQEFD-YPAASAIASVILAASLLLLFSINTLQSRFGRRVVG 276 (277)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 06750017998865149999999998768-89999999999999999999999999999875379
No 13
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.93 E-value=6.7e-25 Score=155.44 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_conf 99999999999999999999999999999999706763799999999999855532222221112233321---------
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIG--------- 85 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g--------- 85 (226)
..++++++||+.+++.++++++++|+++|....+.+.+ .+......+.+.-.+|.++..+.+.+..+..|
T Consensus 88 ~~~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~f~-g~~~l~~ll~lp~~lP~~v~a~a~~~l~~~~G~ln~~L~~l 166 (312)
T TIGR03226 88 HDFRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFP-GAELIGRFLDLFIAFPSFLIAFAFIFIYGSAGLLNGALMRA 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 67999999999999999999999999999999962376-28999999999999889999999999983577077999996
Q ss_pred --CCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --014------433333310011000001578999887528336899865174635657787522357644567787889
Q gi|254781113|r 86 --IVF------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFI 157 (226)
Q Consensus 86 --~~~------~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i 157 (226)
... .+..+.+++.+....||+...+.++++++|++++|||+++|+|+||+||||++|+..|.++.+..-.|+
T Consensus 167 ~gl~~~p~~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~lL~Fi 246 (312)
T TIGR03226 167 FAFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFL 246 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 28667745777409999999999989999999999999689789999988499988867874278468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 875267999997699999999999832--357799999999999999999999999999986213
Q gi|254781113|r 158 SILKSTSVASTITIPEIFQTAQRIVST--TYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 158 ~lik~tsl~s~ig~~el~~~a~~i~~~--~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
..+.+-....++|-++.......+.++ .........+.+++.++++..+..+.++.+||-.+.
T Consensus 247 ~~~~~F~~~~~lgg~~~~tl~~~Iy~~~~~~~d~~~AaAlavillv~~l~l~~l~r~~~rR~~~~ 311 (312)
T TIGR03226 247 LTLNEFGILLFIGAAGLITLPMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAARRAGEG 311 (312)
T ss_pred HHHHHHCCEEEEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99977541134408997017999999998757989999999999999999999999998763489
No 14
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.93 E-value=8.1e-25 Score=155.02 Aligned_cols=207 Identities=15% Similarity=0.187 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q ss_conf 999999999999999999999999999999997067637999999999998555322222211122333----------2
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPH----------I 84 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~----------~ 84 (226)
+..++++++|+.+++.++++++++|.++|....+.+.+ .+.......-+.--+|.++..+.+...++. .
T Consensus 59 ~~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~~~-~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~l 137 (285)
T PRK09497 59 PLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHK-VRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWL 137 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 89999999999999999999999999988863016754-38999999999998799999999999814330788999981
Q ss_pred HCC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101------44333333100110000015789998875283368998651746356577875223576445677878898
Q gi|254781113|r 85 GIV------FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFIS 158 (226)
Q Consensus 85 g~~------~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~ 158 (226)
|.. .....+.+++......||+...+.++++++|++++||||.+|+|+||+||||++|+..|.++.+..-.++.
T Consensus 138 g~~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~ 217 (285)
T PRK09497 138 GVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLP 217 (285)
T ss_pred CCCCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHH
T ss_conf 57566235423498887875313120677437878840896899999875999789132022081089999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 75267999997699999999999832--35779999999999999999999999999998621374
Q gi|254781113|r 159 ILKSTSVASTITIPEIFQTAQRIVST--TYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 159 lik~tsl~s~ig~~el~~~a~~i~~~--~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
.+++-.....+|.++-...++.+.++ +...+..-.+.+++.++++..+..+..+.+|+++|+++
T Consensus 218 s~~~F~~~~~lgG~~~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~~~i~~r~~k~~~kk~~ 283 (285)
T PRK09497 218 AMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVE 283 (285)
T ss_pred HHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC
T ss_conf 988762100104897552999999999870690699999999999999999999999999530141
No 15
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=99.93 E-value=2.2e-24 Score=152.66 Aligned_cols=205 Identities=12% Similarity=0.131 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_conf 9999999999999999999999999999999706763799999999999855532222221112233321----------
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIG---------- 85 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g---------- 85 (226)
.+++++++|+..+++++++++++|+++|....+.+.| .+...+..+.+.-.+|..+..+.+....+.-|
T Consensus 61 ~~~~al~~Tl~~a~~~~~i~lvlG~~lA~~l~r~~f~-gr~~~~~l~~lP~~ip~vV~g~~~~~l~~~~G~l~~~L~~~~ 139 (291)
T PRK11602 61 DMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFP-GRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHN 139 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 8999999999999999999999999999999927886-089999999998863799999999998264437899998558
Q ss_pred CC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01-44333333100110000015789998875283368998651746356577875223576445677878898752679
Q gi|254781113|r 86 IV-FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164 (226)
Q Consensus 86 ~~-~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ts 164 (226)
.. ...+.+.+++..+...||+...++++++++|++++|||+.+|+|+||+||||++|+..|.++.+..-.++..+++-.
T Consensus 140 ~~~~~s~~giil~~v~~~~Pf~~~~~~a~l~~i~~~l~EAA~~lGAs~wq~F~~VtLPll~P~i~~g~iL~f~~al~~Fg 219 (291)
T PRK11602 140 LQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFG 219 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 32867789999999999999999999999986895899999876999878989864983099999999999999987568
Q ss_pred HHHHHHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99997699-----99999999983235779999999999999999999999999998621374
Q gi|254781113|r 165 VASTITIP-----EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 165 l~s~ig~~-----el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
...+++.+ +.....-+....+++....+..++++ .+++..+..+...+|+|.+|++.
T Consensus 220 ~v~~l~G~~~g~T~t~~~~i~~~~~~~~~~~a~~~a~~l-~~~~~i~l~l~~~lq~R~~r~~~ 281 (291)
T PRK11602 220 AVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALL-TLMAIITLFLKSMLQWRLENQEK 281 (291)
T ss_pred CHHEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 043115799885010699999999812644699999999-99999999999999999970788
No 16
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.93 E-value=2.3e-24 Score=152.53 Aligned_cols=205 Identities=17% Similarity=0.166 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CC
Q ss_conf 9999999999999999999999999999999970676379999999999985553222222111223332101-----44
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIV-----FD 89 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~-----~~ 89 (226)
+.+++++++|+.+++.++++++++|.+.|..-.+.++...+..........-.+|.++..+-+.......|.. ..
T Consensus 59 ~~~~~a~~~Sl~ia~~~t~i~~~lG~~~A~~l~r~~~~~g~~~~~~l~~~Pl~vP~iv~gl~l~~~f~~~g~~~g~~~~~ 138 (281)
T PRK10592 59 DAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALGHAIGWPADR 138 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf 78999999999999999999999999999999980553306999999998998678999999999999846322532002
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333310011000001578999887528336899865174635657787522357644567787889875267999997
Q gi|254781113|r 90 SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI 169 (226)
Q Consensus 90 ~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~i 169 (226)
+....++++.....||+..+++++++++|++++|||+++|+|+||+||+|++|+..|.++.+..-.|+..+.|-.....+
T Consensus 139 ~~~~i~i~~~~~~~P~~~~~i~a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~~~l 218 (281)
T PRK10592 139 GMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV 218 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 37899999999999999999999998589279999988199988883435417115989999999999999877788621
Q ss_pred HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6999999999998---323577999999999999999999999999999862137
Q gi|254781113|r 170 TIPEIFQTAQRIV---STTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 170 g~~el~~~a~~i~---~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~ 221 (226)
+-.+.......+. ....++ ...+++.+.++++..+..+..++.+|-+|+|
T Consensus 219 ~g~~~~TLpv~iy~~~~~~~~p--~~~A~~~l~~~v~~~~~~ia~~l~~R~~k~r 271 (281)
T PRK10592 219 SGPGATTLPMLVFSSVRMGVNP--EINALATLILGVVGIVGFIAWYLMARAEKQR 271 (281)
T ss_pred ECCCCCCHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0899845699999998717987--9999999999999999999999998889887
No 17
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=99.93 E-value=5.1e-24 Score=150.61 Aligned_cols=211 Identities=13% Similarity=0.182 Sum_probs=149.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73089999999999999999999999999999999999999999970676379999999999985553222222111223
Q gi|254781113|r 2 KYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL 81 (226)
Q Consensus 2 ~~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~ 81 (226)
+++|++...++- .+++++++|+.++++++.+++++|++.|++-.+. ++..+......+...--+|.++...-.+..+
T Consensus 50 Sl~WY~~l~~~~--~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~-~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f 126 (267)
T COG1177 50 SLKWYGALFSDP--RLLSALWNSLLIALLSALLATLLGTLAALALARY-RFRGKNLLEGLILLPLVVPDIVTGIALLLLF 126 (267)
T ss_pred CHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 889999985784--8999999999999999999999999999999970-4026899999997424150999999999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33210144333333100110000015789998875283368998651746356577875223576445677878898752
Q gi|254781113|r 82 PHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILK 161 (226)
Q Consensus 82 ~~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik 161 (226)
...| ...+++..++++...+.||+..++.++++++|++.+|||+++|+|+||++|||++|+.+|.++.+..-.|...+.
T Consensus 127 ~~~~-~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~D 205 (267)
T COG1177 127 AALG-LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFD 205 (267)
T ss_pred HHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9868-875299999999999866899999999973896799999876998888989976975279999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999976999999999998323577-9999999999999999999999999998
Q gi|254781113|r 162 STSVASTITIPEIFQTAQRIVSTTYQP-LIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 162 ~tsl~s~ig~~el~~~a~~i~~~~~~~-~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
|..+.+.++-++......++.+..... -+...+++.+++.++..+.....++.||
T Consensus 206 efvit~f~~gp~~~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~ 261 (267)
T COG1177 206 EFVITFFLAGPGFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRR 261 (267)
T ss_pred HHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77863113289987218999998655898199999999999999999999998643
No 18
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.1e-23 Score=146.33 Aligned_cols=204 Identities=16% Similarity=0.226 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999999999999997067-637999999999998555322222-2111223332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFS-DTIISLIMHFYVWIFRGTPLLVQL-FVIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~-~~~~~~~~~~~i~~~r~iP~lv~l-~~~~f~~~~~g~~~~~~~~ 93 (226)
-+.+++..|+.+.+++.++++++|+..|++...+. +.++....+..++.+-++|++|.- |-.-+.+...|...+. .+
T Consensus 68 Gi~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~-la 146 (292)
T COG0581 68 GIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSA-LA 146 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH-HH
T ss_conf 36999999999999999999989999999999974787299999999998806844999999999999997776179-99
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 331001100000157899988752833689986517463565778752235764456778788987526799-9997699
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSV-ASTITIP 172 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl-~s~ig~~ 172 (226)
+.+++++..-|++.+..++++++||++++|||.++|+||||+.+||++|.|+|.++.+..-..--...||+- ....|..
T Consensus 147 GaLaLall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTGviLaiaR~~GETAPlL~tag~~ 226 (292)
T COG0581 147 GALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAGETAPLLFTAGMS 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888999999999980899999999974984878978888971475899999999999987248999996535
Q ss_pred H---------------HHHHHHHHHHC-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9---------------99999999832-35-7799999999999999999999999999986213
Q gi|254781113|r 173 E---------------IFQTAQRIVST-TY-QPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 173 e---------------l~~~a~~i~~~-~~-~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
. +-..-....++ .+ ...+.....+.+.+++...++...+.+.||.+|+
T Consensus 227 ~~~~~~p~~~~~p~~~Lpv~Iy~~~~~~~~~~~~~~a~gaa~vLl~~vl~ln~~a~~l~~~~~~~ 291 (292)
T COG0581 227 ANSPSWPTDLLTPVAALPVHIYMLATSGPSPEAQELAWGAALVLLLIVLLLNLLARLLRRRFRKK 291 (292)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 51465898766744312599999970567677999899999999999999999999999988503
No 19
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=99.92 E-value=7.4e-23 Score=144.24 Aligned_cols=197 Identities=17% Similarity=0.216 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999999999999999970676379999999999985553222222111223332101443333
Q gi|254781113|r 14 PQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 14 ~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~ 93 (226)
.+.++......+.++..+..++.++|+++|+.-.++ +..+..+....++.+.+|++.++-+. +|..|+.. ..
T Consensus 21 ~~~~~~~~~~Hl~l~~~a~~~a~~igVplGIl~~r~--~~~~~~v~~v~nv~qTiPslAllall---ipv~GiG~---~P 92 (221)
T COG1174 21 QDYLLALTLQHLLLVLLAVLIAILIGVPLGILVTRS--RRLAGLVLGVANVLQTIPSLALLALL---IPVLGIGL---TP 92 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCHHHHHHHHH---HHHHCCCC---CH
T ss_conf 879999999999999999999999997889998734--88888999999998616089999999---99856886---38
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33100110000015789998875283368998651746356577875223576445677878898752679999976999
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~e 173 (226)
+++++.+++---+.+-...|+++||++..||||.+|||+||.+|||.+|.|+|.++.++....+..+...++++.||.+.
T Consensus 93 AiiAL~lYsLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~Atiaa~IGAGG 172 (221)
T COG1174 93 AIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGTATIAALIGAGG 172 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999971999999999814987789998865998787989741200189998648999999999999999982774
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999832357799999999999999999999999999986213
Q gi|254781113|r 174 IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 174 l~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
+...-.+--+. ++ .+.....++.--++...++.+.+++||++.++
T Consensus 173 LG~~I~~Gl~~-~n-~~~il~Gai~valLAi~~d~ll~~~e~~l~~~ 217 (221)
T COG1174 173 LGDLIFRGLNL-NN-TALILAGAIPVALLAILADVLLGLLERALTPK 217 (221)
T ss_pred CHHHHHHHHCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 42899820401-66-79999969999999999999999999983401
No 20
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.92 E-value=1.6e-23 Score=147.96 Aligned_cols=211 Identities=18% Similarity=0.220 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30899999999999999999999999999999999999999999706763799999999999855532222221112233
Q gi|254781113|r 3 YEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLP 82 (226)
Q Consensus 3 ~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~ 82 (226)
+||+....++ +.++++++||+.+++.++++++++|.+.|..-.+.+.|. +........+.-.+|.++...-.+....
T Consensus 44 l~~y~~~f~~--~~~~~~~~nSl~ia~~~~~~~~~lg~~~A~~l~r~~~~~-~~~~~~l~~~p~~~P~~v~~i~l~~~~~ 120 (257)
T PRK09500 44 TKWYELLMNN--DSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRG-KKFVSGMLFVVMMSPDIVMAISLLVLFM 120 (257)
T ss_pred HHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999879--379999999999999999999999999999997526774-5699999999999799999999999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32101443333331001100000157899988752833689986517463565778752235764456778788987526
Q gi|254781113|r 83 HIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKS 162 (226)
Q Consensus 83 ~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ 162 (226)
..|.. ++++..+++......||....++++++++|++++||||.+|+|+||++|||++|++.|.++.+..-.|+..+.|
T Consensus 121 ~~g~~-~~~~~lil~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~e 199 (257)
T PRK09500 121 LLGIQ-LGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDD 199 (257)
T ss_pred HCCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 73513-20999998888851502799999999717969999998729998796363129847999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999976999999999998---3235779999999999999999999999999998621
Q gi|254781113|r 163 TSVASTITIPEIFQTAQRIV---STTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 163 tsl~s~ig~~el~~~a~~i~---~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
-.....++-++.......+. ..... +...+.+.+.++++..+..+.+++.||-+|
T Consensus 200 f~~~~~l~g~~~~tlp~~i~~~~~~~~~--~~~~Ala~il~~i~~~~~~l~~~l~r~~~k 257 (257)
T PRK09500 200 VVVSSFVTGPSYEILPLKIYSMVKVGVS--PEVNALATILLVLSLVLVILSQLLARDKTK 257 (257)
T ss_pred HHHHHHHCCCCCEEHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999975289960289999999873787--599999999999999999999998665479
No 21
>PRK11275 pstC phosphate transporter permease subunit; Provisional
Probab=99.92 E-value=5.9e-23 Score=144.79 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------
Q ss_conf 99999999999999999999999999999970676379999999999985553222222111223-332-----------
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL-PHI----------- 84 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~-~~~----------- 84 (226)
.++.+..|+.++.++.+++.++|+..|+....+.+++.+.+.+..+|++.++|++|.-++-.+.+ |.+
T Consensus 71 i~~~i~GTl~~s~iAllia~Plgi~~Aiyl~eya~~~~~~~l~~~ielLagIPSVV~Gl~Gl~v~~p~~~~~~~~~~~~~ 150 (319)
T PRK11275 71 ALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNI 150 (319)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29999999999999999999999999999999766858989999999982175899999999999999998754556544
Q ss_pred -------HCC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------101------4433333310011000001578999887528336899865174635657787522357644567
Q gi|254781113|r 85 -------GIV------FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP 151 (226)
Q Consensus 85 -------g~~------~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~ 151 (226)
+.. ......+-+.+++...|++..+.|+++++||++++||+.++|+||||+.+||++|.+.|.++.+
T Consensus 151 ~~~~~~~~~~~~~~~~G~s~l~a~i~LaiMilP~i~s~s~eal~~VP~~~reaa~ALGatrw~ti~~VvlP~a~~GI~~g 230 (319)
T PRK11275 151 LSNIPIVGALFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGG 230 (319)
T ss_pred CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 12104677761477644028999999999999999999999999688999999998399799999999999888689999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH------HHH--------HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7878898752679-99997699------999--------99999983235-77999999999999999999999999999
Q gi|254781113|r 152 LSSEFISILKSTS-VASTITIP------EIF--------QTAQRIVSTTY-QPLIIYCELAFVYLILTSFCYIIQIKIES 215 (226)
Q Consensus 152 l~~~~i~lik~ts-l~s~ig~~------el~--------~~a~~i~~~~~-~~~~~~~~~~~i~l~i~~~~~~l~~~ler 215 (226)
..-.+--.+.||. +.-++|-. .+. ..+++..+... .........+++.++++..++.+.+++-|
T Consensus 231 viLg~gRAlGETmaV~mv~Gn~~~~~~~~lf~p~~Tlts~Ia~~~~ea~~g~~~~al~a~glvLfvit~i~N~~a~~iv~ 310 (319)
T PRK11275 231 VMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIM 310 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988999999927876689876456550899999996313577489999999999999999999999999999
Q ss_pred HHHHCC
Q ss_conf 862137
Q gi|254781113|r 216 SVTQHT 221 (226)
Q Consensus 216 r~~~~~ 221 (226)
|.+|+.
T Consensus 311 R~~k~~ 316 (319)
T PRK11275 311 RLAKNE 316 (319)
T ss_pred HHHHHC
T ss_conf 987523
No 22
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=99.91 E-value=1e-22 Score=143.49 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 999999999999999999999999999999970676379999999999985553222222111223332-----------
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHI----------- 84 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~----------- 84 (226)
..|+++.+|+.+++.++++++++|+++|....+.+. +.+...+..+.+...+|.++..+.+...++..
T Consensus 6 ~~w~al~~Sl~~a~~s~~~~~~ig~~~A~~l~r~~~-~~~~~l~~l~~lp~~~P~iv~~~~~~~~~~~~g~~~~~l~~~~ 84 (229)
T PRK09421 6 PEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRF-PGKSLLDSVVHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWF 84 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999999999999999999999999999996135-3089999999999998999999999997144585267899982
Q ss_pred HCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1014-433333310011000001578999887528336899865174635657787522357644567787889875267
Q gi|254781113|r 85 GIVF-DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKST 163 (226)
Q Consensus 85 g~~~-~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~t 163 (226)
|... ..+...+++..+...|++....+++++++|++.+|||+++|+|+||+++||++|++.|.++.+..-.|+..+.|.
T Consensus 85 gi~~~~~~~g~~l~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~lGAs~~~~f~~V~lPl~~P~i~~~~il~F~~s~~ef 164 (229)
T PRK09421 85 GISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164 (229)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82223459999999999999999999999998599899999988599264675998999899999999999999999997
Q ss_pred HHHHHH--HHH-HHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999997--699-99999999983--23577999999999999999999999999999862137
Q gi|254781113|r 164 SVASTI--TIP-EIFQTAQRIVS--TTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 164 sl~s~i--g~~-el~~~a~~i~~--~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~ 221 (226)
...... +.+ +.......+.+ ++..........+++.++++.....+.++++||-+||.
T Consensus 165 ~~~~~l~~~~p~~~~tl~~~iy~~~~~~~~~~~aa~l~~v~i~~~~~~ll~~~~l~rR~~~r~ 227 (229)
T PRK09421 165 GATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRL 227 (229)
T ss_pred HHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 699989548998602179999999873896899999999999999999999999999987654
No 23
>PRK10160 taurine transporter subunit; Provisional
Probab=99.91 E-value=7.1e-23 Score=144.35 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999999999999999999999999706763799999999999855532222--22111223332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ--LFVIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~--l~~~~f~~~~~g~~~~~~~~ 93 (226)
.+++++..|+...+.+..++.++|+++|+.. ..++..+...+++++++|++|.+.+ +++.+||.+.....
T Consensus 75 ~l~~~~~~Tl~r~~~Gf~la~~~Gv~lGil~--g~~~~~~~~l~P~l~~l~~iP~ial~Pl~ilwfG~g~~~~i------ 146 (275)
T PRK10160 75 TLWQHLAASLTRIVLALLAAVVIGIPVGIAM--GLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKI------ 146 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHH------
T ss_conf 4999999999999999999999999999999--98799999999999999858899999999985357840061------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 3310011000001578999887528336899865174635657787522357644567787889875267999997----
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI---- 169 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~i---- 169 (226)
+...+.....+......|++++|+++.|+||++|+|+||.++||.+|.++|.++.++........+..-.+-.+
T Consensus 147 --~vv~l~~~fpi~~nt~~Gvr~vd~~l~e~ar~~gas~~q~~~~V~lP~alP~i~~GlRi~~~~a~~~~v~aE~l~~~~ 224 (275)
T PRK10160 147 --LLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATR 224 (275)
T ss_pred --EEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf --010287540899999999971899999999982999999999988887899999999999999999999999983479
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 69999999999983235779999999999999999999999999998621374788
Q gi|254781113|r 170 TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVD 225 (226)
Q Consensus 170 g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~~ 225 (226)
|++.++..+++ +++...+ .+..++..++...++.+.+++|||+.+.+.+.+
T Consensus 225 GLG~~I~~a~~----~~~~~~~-~a~ii~i~llg~~l~~~~~~lerrl~~W~~~~~ 275 (275)
T PRK10160 225 GLGFMVQSAGE----FLATDVV-LAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ 275 (275)
T ss_pred CHHHHHHHHHH----HCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 87899999998----6378999-999999999999999999999989187896649
No 24
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5e-23 Score=145.16 Aligned_cols=200 Identities=14% Similarity=0.246 Sum_probs=142.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC
Q ss_conf 999999-9999999999999999999999999999999706763799999999999855532222--2211122333210
Q gi|254781113|r 10 IDSFPQ-LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ--LFVIFYGLPHIGI 86 (226)
Q Consensus 10 ~~~~~~-~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~--l~~~~f~~~~~g~ 86 (226)
.+.+++ .++++...|+...+.+..++..+|+++|+.. ..++..+...++++.+.|++|.+.+ +++.+||.+...+
T Consensus 51 ~~~~~~g~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~--g~~~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s~ 128 (258)
T COG0600 51 VELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILM--GLSRLLERLLDPLVQVLRPIPPLALAPLAILWFGIGETSK 128 (258)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 98823755999999999999999999999999999999--8579999999699999931777999999999990796119
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q ss_conf 14433333310011000001578999887528336899865174635657787522357644567787----88987526
Q gi|254781113|r 87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSS----EFISILKS 162 (226)
Q Consensus 87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~----~~i~lik~ 162 (226)
..-......+. +.-....|++++|+++.|++|++|+|+||.+||+++|.|+|.++.++.. .++..+-+
T Consensus 129 i~i~~~~~ffp--------i~int~~Gvr~v~~~~~~~ar~lgas~~~~l~~v~lP~AlP~i~tgLRia~g~aw~~~Vva 200 (258)
T COG0600 129 IVIAVLGAFFP--------ILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIAIGLAWIGLVVA 200 (258)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999--------9999999987189999999998098977787762053007899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79999976999999999998323577999999999999999999999999999862137478
Q gi|254781113|r 163 TSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSV 224 (226)
Q Consensus 163 tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~ 224 (226)
.-+.+-.|.+.++..+++. ++.... .+..+++-++...++.+.+++|||+.|+|.+.
T Consensus 201 E~l~a~~GLG~~i~~a~~~----~~~~~v-~a~i~~i~~lgll~d~~v~~~er~~~~w~~~~ 257 (258)
T COG0600 201 ELLGASSGLGYLILDARNN----LQTDLV-FAAILVIALLGLLLDRLVRLLERRLLRWRPAV 257 (258)
T ss_pred HHHHCCCCHHHHHHHHHHH----CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9970566687999999985----167899-99999999999999999999999985212368
No 25
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=99.91 E-value=5.4e-23 Score=144.99 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999999999999999999999999997067637999999999998555322222--21112233321014433333
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYGLPHIGIVFDSFVAI 94 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~~~~~g~~~~~~~~~ 94 (226)
+|+....|+.+..++++++.++|+++|+.. .+++..+.+.++..+.++.+|.++.+ .+.+||++. ..+
T Consensus 141 ~W~~aM~TLalvlvav~~~~iiGiplGI~~--ars~r~~~il~PiLD~mQT~P~FVYLiP~vmlFGiG~--------vpa 210 (354)
T PRK10952 141 AWSQAMVTLALVLTALLFCIVIGLPLGIWL--ARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGN--------VPG 210 (354)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------HHH
T ss_conf 329999999999999999999999999999--7469999999999987311307999999999927971--------459
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31001100000157899988752833689986517463565778752235764456778788987526799999769999
Q gi|254781113|r 95 IISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEI 174 (226)
Q Consensus 95 ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~el 174 (226)
+++..++..+-+.+...-|+++||++..|||++.|+|++|.++||.+|.|+|.++.++-...+..+....+++.||.+++
T Consensus 211 viAtviyAlpP~iR~T~lGir~Vp~~viEAa~~~G~T~~Q~L~kVeLPlA~P~ImaGvNQtimlaLsMvVIAa~IGagGL 290 (354)
T PRK10952 211 VVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGL 290 (354)
T ss_pred HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999997358999999999608888999999849998889898336024999999999999999999999999578866
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCC
Q ss_conf 999999983235779999999999999999999999999998621--374788
Q gi|254781113|r 175 FQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ--HTYSVD 225 (226)
Q Consensus 175 ~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~--~~~~~~ 225 (226)
...-.+-.++ .+ +..-...++...++...++.+...+.|+-++ +|++++
T Consensus 291 G~~Vl~gi~~-~d-~G~gl~aGl~IVlLAIiLDRiTqa~g~~~r~~~~~~w~~ 341 (354)
T PRK10952 291 GQMVLRGIGR-LD-MGLATVGGVGIVILAIILDRLTQAVGRDSRSRGNRRWYT 341 (354)
T ss_pred HHHHHHHHHH-CC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 1899999862-24-368999999999999999998898562000268861022
No 26
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.9e-22 Score=140.27 Aligned_cols=196 Identities=20% Similarity=0.196 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999999999999999999999997--067637999999999998555322222211122333210144333
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRI--FFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFV 92 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~--~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~ 92 (226)
...+..++.|+.+++.++++|.++++++++... ..++++.+.+.+.+.++.|++|.+++..++ .+.+| .+-.
T Consensus 85 ~~~~~~ll~Tl~ma~~gT~l~~i~aipl~flaa~n~~~~~~~~~~~r~ll~~iR~iP~iv~a~if---v~~~g---~G~~ 158 (283)
T COG3639 85 PDILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLF---VAAFG---LGPF 158 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHC---CCHH
T ss_conf 15799999999999999999999999999997312586412899999999999764299999999---99857---8547
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33310011000001578999887528336899865174635657787522357644567787889875267999997699
Q gi|254781113|r 93 AIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP 172 (226)
Q Consensus 93 ~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~ 172 (226)
++++++.+++.+.++..+.+++|++|+++.|+.|+.|+|+.|..++-++||.+|.-+.-..-.+..+++++++.+.+|.+
T Consensus 159 agilAl~i~t~g~LgKl~~e~iE~id~~p~e~l~a~Gas~~~~~~~~vlPqv~p~f~s~~lyrfE~n~R~a~VlG~vGaG 238 (283)
T COG3639 159 AGVLALGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFESNIRAAAVLGLVGAG 238 (283)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78999999802199999999998457767899998368614533112001241889999999999875788998732554
Q ss_pred HHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-983235779999999999999999999999999998621
Q gi|254781113|r 173 EIFQTAQR-IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 173 el~~~a~~-i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
.+...-.. +.. ++. +......+..++.+..++.++.++.||+.+
T Consensus 239 GIG~~L~~~~~~--~~~-d~v~~i~l~i~v~V~~id~iS~~iR~r~~~ 283 (283)
T COG3639 239 GIGQRLMNSISL--FQW-DKVATIILPILVLVILIDLISAKIRKRLLS 283 (283)
T ss_pred HHHHHHHHHHHH--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 277999988744--047-576999999999999999999999998509
No 27
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=99.91 E-value=1.7e-22 Score=142.25 Aligned_cols=195 Identities=16% Similarity=0.202 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999999999999999999999999706763799999999999855532222--22111223332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ--LFVIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~--l~~~~f~~~~~g~~~~~~~~ 93 (226)
.++.++..|+...+++..+|.++|+++|+.. ..+++.+....++++++|++|.+.+ +++.+||.+.....
T Consensus 57 ~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~--g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g~~~~i------ 128 (263)
T PRK11365 57 ELWQHLAISSWRALIGFSIGGSLGLILGLIS--GLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKI------ 128 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH------
T ss_conf 5999999999999999999999999999999--98699998758599999765799999999999715742044------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q ss_conf 3310011000001578999887528336899865174635657787522357644567787889875267999----997
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA----STI 169 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~----s~i 169 (226)
+...+.....+....+.|++++|+++.|.||++|+|++|.++||.+|.++|.++.++........+..-.+ +.-
T Consensus 129 --~~i~~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~ 206 (263)
T PRK11365 129 --FLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS 206 (263)
T ss_pred --HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf --788651042889999888754999999999872999999999989800688999999999999999999999984469
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 69999999999983235779999999999999999999999999998621374788
Q gi|254781113|r 170 TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVD 225 (226)
Q Consensus 170 g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~~ 225 (226)
|++.++..+++. ++....+. ..+..-++....+.+.+++|||+-|.+.+..
T Consensus 207 GLG~~i~~a~~~----~~~~~v~a-~ii~i~llg~~l~~~~~~lerrll~W~~~~~ 257 (263)
T PRK11365 207 GIGYLAMNAREF----LQTDVVVV-AIILYALLGKLADVSAQLLERLWLRWNPAYH 257 (263)
T ss_pred CHHHHHHHHHHH----HCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 888999999987----06889999-9999999999999999999999388885634
No 28
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.4e-22 Score=139.09 Aligned_cols=200 Identities=15% Similarity=0.197 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q ss_conf 999999999999999999999999999999997067637999999999998555322222211122333----------2
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPH----------I 84 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~----------~ 84 (226)
..+++.++||+..++.++++++++|+++|..-.+...+ -|...+...-..-.+|.++..+-+....+. .
T Consensus 52 ~~~~~~l~nTl~la~~~~~ls~~lG~~~A~l~~r~~fp-Gr~~l~~l~~lPl~iP~~V~a~~~~~l~G~~G~~~~l~~~~ 130 (540)
T COG1178 52 PYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFP-GRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLELL 130 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 38999999999999999999999999999999986277-17999999999988879999999999976763499999874
Q ss_pred HCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101---44333333100110000015789998875283368998651746356577875223576445677878898752
Q gi|254781113|r 85 GIV---FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILK 161 (226)
Q Consensus 85 g~~---~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik 161 (226)
|.. ..++...++++++++.||...+++++++++|++++||||.+|+|+||+||+|++|++.|.+..+..-.++..+.
T Consensus 131 G~~~~~iyg~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~~~Lvf~~~l~ 210 (540)
T COG1178 131 GFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLA 210 (540)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46876646689999999999825999999999983894699999875998322888867887778999999999999998
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67999997699--99999999983235779999999999999999999999999998
Q gi|254781113|r 162 STSVASTITIP--EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 162 ~tsl~s~ig~~--el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
|-+...++|.+ -+.....+-....++ .......+++-+.+|.....+.++.+++
T Consensus 211 dFg~p~~LG~~~~Tl~t~IY~~~~~~~~-~~~Aa~la~lll~~~~~ll~~~~~~~~~ 266 (540)
T COG1178 211 DFGTPLILGGGYTTLETAIYQAIMSSFD-LARAALLALLLLLITAALLLLERRLRRA 266 (540)
T ss_pred HHHHHHHHCCCCCEEHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6446999769873329999999984588-2569999999999999999999998503
No 29
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=99.90 E-value=8.4e-23 Score=143.93 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCC
Q ss_conf 999999999999999999999999999999970676379999999999985553222222--111223332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLF--VIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~--~~~f~~~~~g~~~~~~~~ 93 (226)
-+|+....|+.+...++++|.++|+|+|+.. .++++.+.+.++..++++.+|..|.+. +..||++. ..
T Consensus 89 GlW~~tM~TLaLVl~a~~isivIGiPlGI~~--ar~~~~~~i~~PiLDlMQTmP~FVYLIPav~lFGlG~--------VP 158 (290)
T COG4176 89 GLWDQTMQTLALVLTATLISIVIGIPLGIWA--ARSPRVYRIVRPILDLMQTMPTFVYLIPAVMLFGLGN--------VP 158 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH--HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC--------CC
T ss_conf 5089999999999999999999800489998--5368899999689999860542799999999907888--------76
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33100110000015789998875283368998651746356577875223576445677878898752679999976999
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~e 173 (226)
++++-.++..|-..+..+-|++.||++..||+++.|+|+||.++||.+|.|+|.++.++.......+...-++|.+|.+.
T Consensus 159 g~iAtvIfA~PP~IRlT~LGIrqVp~eliEA~~AFG~t~~Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~G 238 (290)
T COG4176 159 GLIATVIFAMPPMIRLTNLGIRQVPAELIEAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGG 238 (290)
T ss_pred EEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 34136565368158776324101789999999970898888978720743077899866799999999999999875787
Q ss_pred HHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCC
Q ss_conf 9999999-983235779999999999999999999999999998-6213747
Q gi|254781113|r 174 IFQTAQR-IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESS-VTQHTYS 223 (226)
Q Consensus 174 l~~~a~~-i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr-~~~~~~~ 223 (226)
+.....+ ++. ..+..-...++...++...++.+.+...+| .+|||+.
T Consensus 239 LG~~Vl~~i~~---ldig~g~~aGlaIVilAIiLDRitq~~~~~~~~~~~~~ 287 (290)
T COG4176 239 LGQEVLRGIQR---LDIGLGFEAGLAIVILAIILDRLTQAFGRKAKSRHRRR 287 (290)
T ss_pred CCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 76899999887---21377776308999999999999888454531022124
No 30
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.90 E-value=2.5e-22 Score=141.30 Aligned_cols=201 Identities=16% Similarity=0.229 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q ss_conf 999999999999999999999999999999997067637999999999998555322222211122333----------2
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPH----------I 84 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~----------~ 84 (226)
...++++++|+.+++.++++++++|.++|..-.+.+.+. |......+-+.-.+|.++..+.+...++. .
T Consensus 93 ~~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~~~~-r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~~l 171 (317)
T PRK10683 93 PLYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSKPST-RNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWL 171 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 789999999999999999999999999999999388617-8999999999970679999999999973143487899996
Q ss_pred HCC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101------44333333100110000015789998875283368998651746356577875223576445677878898
Q gi|254781113|r 85 GIV------FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFIS 158 (226)
Q Consensus 85 g~~------~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~ 158 (226)
|.. .....+.++++.....||+...+.++++++|++.+|||+++|+|+||+||||++|+..|.++.+..-.|+.
T Consensus 172 Gli~~pl~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvFi~ 251 (317)
T PRK10683 172 GVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIP 251 (317)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHHHH
T ss_conf 04467632256458999999999999999999999985890899999876998655400232062189999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75267999997699999999999832--35779999999999999999999999999998
Q gi|254781113|r 159 ILKSTSVASTITIPEIFQTAQRIVST--TYQPLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 159 lik~tsl~s~ig~~el~~~a~~i~~~--~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
.+.+-..-..+|.++-...++.+.++ +........+++++.++++.....+..+.|+|
T Consensus 252 a~g~F~iP~lLGG~~~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~~r~~~k 311 (317)
T PRK10683 252 AVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQK 311 (317)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988877686642998562999999999874680589999999999999999999999887
No 31
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.90 E-value=3.1e-22 Score=140.84 Aligned_cols=201 Identities=14% Similarity=0.158 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999999999999999999999970--676379999999999985553222222--111223332101443333
Q gi|254781113|r 18 YAAIVVTLPIACISFVISLIIGFFIAVIRIF--FSDTIISLIMHFYVWIFRGTPLLVQLF--VIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 18 ~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~--~~~~~~~~~~~~~i~~~r~iP~lv~l~--~~~f~~~~~g~~~~~~~~ 93 (226)
++++.+|+.++++++.+++++|++.+....+ .+.+..+...+......-.+|.++..+ +..|.-...+.. +..+.
T Consensus 67 ~~a~~~Sl~va~~~a~~a~~lg~~~a~~l~~~~~~~~~~~~~l~~l~~lPl~vP~iv~gl~ll~~f~~~~~~l~-~t~~~ 145 (272)
T TIGR03255 67 FDALAASLEIGFCAAAFALACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGLAILIAFHAGPLDLN-GSLAI 145 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHH
T ss_conf 89999999999999999999999999999986215554899999999989989999999999999995684425-57999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33100110000015789998875283368998651746356577875223576445677878898752679999976999
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~e 173 (226)
.++++.....||..+.+.++++++|++.+|||+++|+|+||++|||++|+..|.++.+..-.|+..++|-+....++-++
T Consensus 146 liiah~~~~lP~~~~~v~a~l~~id~~leeAA~~LGAs~~~~f~~V~LPli~pgilag~~l~F~~S~~ef~~s~~l~~~~ 225 (272)
T TIGR03255 146 VLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMIYPPG 225 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
T ss_conf 99999999999999999999973793099999886998999999998796799999999999999997761532341899
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998-3235779999999999999999999999999998621
Q gi|254781113|r 174 IFQTAQRIV-STTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 174 l~~~a~~i~-~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
.......+. ...........+.+.+.++++.....+..++.||..|
T Consensus 226 ~~TLpv~i~~~~~~g~~~~aaAls~ili~~s~v~li~~~~~~~R~g~ 272 (272)
T TIGR03255 226 FATLPIAIFGATDRGNIADAAALSILLLAASLLALIAIAAIAKRLGQ 272 (272)
T ss_pred CEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 72479999999876784889999999999999999999999976389
No 32
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.90 E-value=2.8e-22 Score=141.03 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222--2111223332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYGLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~~~~~g~~~~~~~~ 93 (226)
.+|+....|+.+..++++++.++|+++|+.. ++++..+.+.++..+.++.+|.++.+ ...+||++. ..
T Consensus 83 G~W~~am~Tlalv~~av~la~~iGiPlGI~~--~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~--------~~ 152 (267)
T TIGR03416 83 GYWEETVETLALVLSATVVCMVIGVPLGIAA--AHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGM--------VP 152 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC--------HH
T ss_conf 1589999999999999999999999999999--8169999999999987431546799999999948870--------56
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33100110000015789998875283368998651746356577875223576445677878898752679999976999
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~e 173 (226)
++++..++..+-+.+....|+++||++..|||+++|+|+||+++||.+|.|+|.++.++-......+....+++.+|.++
T Consensus 153 aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~G 232 (267)
T TIGR03416 153 GLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADG 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999988999999999985676899999983998988979941841589999999999999999999999967885
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781113|r 174 IFQTA 178 (226)
Q Consensus 174 l~~~a 178 (226)
+...-
T Consensus 233 LG~~v 237 (267)
T TIGR03416 233 LGVPV 237 (267)
T ss_pred CHHHH
T ss_conf 36999
No 33
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.89 E-value=1.9e-23 Score=147.47 Aligned_cols=96 Identities=42% Similarity=0.780 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226)
.+++|+.+|+.+++.+.++|+++|+++|++| .+++|+++++++.|+|++||+|.++|+|+.||++|..|+.+|++++++
T Consensus 4 ~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r-~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~yfgLP~~Gi~l~~~~Aa~ 82 (99)
T TIGR01726 4 FLLKGLLLTLLISVLSILLGLVLGLLLALLR-LSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTAAV 82 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 8999999999999999999999999999998-713599999999999999620799999999984354277067789999
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 10011000001578999
Q gi|254781113|r 96 ISLTLNFSAYISEIIRS 112 (226)
Q Consensus 96 i~l~l~~~~~~~~i~r~ 112 (226)
+++++++++|++|++|+
T Consensus 83 ~al~l~~~AY~aEi~R~ 99 (99)
T TIGR01726 83 IALTLFEGAYLAEIFRG 99 (99)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999879999876539
No 34
>PRK11268 pstA phosphate transporter permease subunit; Provisional
Probab=99.89 E-value=1.6e-21 Score=136.95 Aligned_cols=199 Identities=13% Similarity=0.150 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCC
Q ss_conf 9999999999999999999999999999999706-763799999999999855532222221112-23332101443333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFF-SDTIISLIMHFYVWIFRGTPLLVQLFVIFY-GLPHIGIVFDSFVA 93 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~-~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f-~~~~~g~~~~~~~~ 93 (226)
-+.+++..|+.++.++.++++++|+..|+....+ ++++++.+.+..++.+.++|++|.-++.|. ..+..+ .++. ++
T Consensus 78 Gi~~aivGTl~~~~~a~lia~Pigi~~aIyL~Eya~~~~~~~~ir~~i~~LagiPSIV~Glfg~~~~v~~~~-~~s~-la 155 (292)
T PRK11268 78 GLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQME-HFSG-WA 155 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHH-HH
T ss_conf 669999999999999999999999999999999768643999999999998427489999999999998521-2557-89
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33100110000015789998875283368998651746356577875223576445677878898752679999976999
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~e 173 (226)
+.+++++..-|++.+..++++++||++++|||.++|+||||+.+||++|.|.|.++.+..-..--.+.||+-.-..+...
T Consensus 156 g~l~LaimilP~i~~~teeaL~~VP~~lreaa~ALGatkw~ti~~VvlP~A~~GI~tgviLaiaRa~GETApll~ta~~~ 235 (292)
T PRK11268 156 GVIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSN 235 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999995998899999987998657622376076377999999999999998799999998332
Q ss_pred -------------HHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------999999998323577-9999999999999999999999999998
Q gi|254781113|r 174 -------------IFQTAQRIVSTTYQP-LIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 174 -------------l~~~a~~i~~~~~~~-~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
+.....+.....+.. -+.....+++.++++..++.+.+.+.||
T Consensus 236 ~~~~~~l~~p~~tLp~~Iy~~a~~p~~~~~~la~a~alvL~~~vL~lNi~ar~i~rr 292 (292)
T PRK11268 236 QFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLLITLCVLLLNILARVVFAK 292 (292)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 347899787301548999998049647799999999999999999999999998559
No 35
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.89 E-value=7.7e-21 Score=133.15 Aligned_cols=212 Identities=16% Similarity=0.154 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30899999999999999999999999999999999999999999706763799999999999855532222221112233
Q gi|254781113|r 3 YEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLP 82 (226)
Q Consensus 3 ~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~ 82 (226)
-||.....|. .+|+.+++|+..++.++++++++|+++|....+.+.+ .|........+.-.+|.+|..+-+-...+
T Consensus 41 ~~~~~~~~d~---~~~~~~~~t~~~a~~st~ls~~lg~~~A~~l~r~~f~-gr~~l~~l~~lp~~~P~~v~a~~~~~~~g 116 (536)
T PRK09433 41 GDWSAVWQDS---YLWHVVRFSFWQAFLSALLSVLLAIPLARALYRRRFP-GRGLLLRLCAMTLVLPVLVAVFGLLSVYG 116 (536)
T ss_pred CCHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6799995688---8999999999999999999999999999999955873-49999999999987699999999999982
Q ss_pred ----------HHHCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----------32101----4433333310011000001578999887528336899865174635657787522357644
Q gi|254781113|r 83 ----------HIGIV----FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTS 148 (226)
Q Consensus 83 ----------~~g~~----~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~i 148 (226)
..|.. ..+....++++++++.|+..+.++++++++|.+|+|+|+.+|+|+||+||+|++|+..|.+
T Consensus 117 ~~G~l~~~l~~~g~~~~~~iyg~~gil~a~~~~~~P~~~~~~~~~l~~i~~~~~e~A~~LG~~~~~~f~~v~lP~~~pai 196 (536)
T PRK09433 117 RSGWLASLLQSLGLEWPFSIYGLQGILLAHVFFNLPLATRLLLQSLESIPSEQRQLAAQLGMRGWQFFRLVEWPWLRRQL 196 (536)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 16449999998288778640129999999999999999999999998199999999987598986888863489887889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 567787889875267999997699----99999999983235779999999999999999999999999998621
Q gi|254781113|r 149 AVPLSSEFISILKSTSVASTITIP----EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 149 lp~l~~~~i~lik~tsl~s~ig~~----el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
.++..-.++..+-+-+....+|.+ .+....++.....++ +......+++-++++.....+.++.++|.+.
T Consensus 197 ~~~~~LVF~~~~~sF~~vl~LGGgp~~~Tlev~IYq~~~~~~D-~~~Aa~La~i~l~i~~~l~~l~~~~~~~~~~ 270 (536)
T PRK09433 197 PPVAALIFMLCFTSFATVLTLGGGPKATTIELAIYQALSFDFD-LARAALLALLQLVLCLLLVLLSQRLSKAIAV 270 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999888999955886403689999999986479-9999999999999999999999998224200
No 36
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3e-21 Score=135.40 Aligned_cols=205 Identities=21% Similarity=0.255 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCC------
Q ss_conf 99999999999999999999999999999970-676379999999999985553222222111223-3321014------
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIF-FSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL-PHIGIVF------ 88 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~-~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~-~~~g~~~------ 88 (226)
.+.-+..|+..++++.+++.++|+..|+.... .++++++.+....+|++.++|++|.-++-.+.+ |.+...+
T Consensus 77 ~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl~vl~P~l~~~~~~~~~~ 156 (310)
T COG0573 77 ALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVFGPPLGF 156 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 49999999999999999998788896888776358287888899999998169711778999999999999985220001
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------43333331001100000157899988752833689986517463565778752235764456778788987526
Q gi|254781113|r 89 ------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKS 162 (226)
Q Consensus 89 ------~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ 162 (226)
.....+.+.+++...|+++-+.|+++++||+.++||+.++|+||||+.|||++|.+.+.++.+.+-.+---+.|
T Consensus 157 ~~~~~g~~~L~a~ivL~IMIiP~i~Sls~da~~~VP~~lreas~aLGaTkweti~kVilpaa~~GIv~a~iLglgRAiGE 236 (310)
T COG0573 157 NLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGLGRALGE 236 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03645520999999999999999999999999958799999998738871004336539866877999999998898728
Q ss_pred H-HHHHHHHHH-----HHH--------HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7-999997699-----999--------99999983235-77999999999999999999999999999862137
Q gi|254781113|r 163 T-SVASTITIP-----EIF--------QTAQRIVSTTY-QPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 163 t-sl~s~ig~~-----el~--------~~a~~i~~~~~-~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~ 221 (226)
| ++.-++|-. .++ -.+++.++... .....+...+++.++++..++.+.+++.||.++++
T Consensus 237 TmAV~mv~Gn~~~~~~slf~p~~Tits~ia~~~gea~~~~~~~aL~~~glvLfvitl~~n~~a~~i~~r~~~~~ 310 (310)
T COG0573 237 TMAVTMVIGNTARIPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNILARYIVRRRRRKY 310 (310)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999996175557754368865499999998631231268999999999999999999999999976663369
No 37
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family describes PstC, which is homologous to PstA (IPR005672 from INTERPRO). In the Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane.
Probab=99.89 E-value=1.6e-21 Score=136.85 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_conf 99999999999999999999999999999970676379999999999985553222222111223---------------
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL--------------- 81 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~--------------- 81 (226)
..+.++.|+..+.++.++++++|+..|+.-+....|.++.+.+..+|++.++|++|.-++-.+.+
T Consensus 69 ~l~~i~GTl~~~~~A~liA~P~~i~~Aif~~e~aP~~~~~~l~~~~ELLAgIPSVvYG~wG~~~l~P~l~~~~~~~~~~~ 148 (317)
T TIGR02138 69 ALPLIVGTLITSLIAILIAVPVGIGIAIFLSEIAPKRVKSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKDHFQPFLGSN 148 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999999999999999998525113569999999972235999999999999999999886786531
Q ss_pred ----HHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----33210144------33333310011000001578999887528336899865174635657787522357644567
Q gi|254781113|r 82 ----PHIGIVFD------SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP 151 (226)
Q Consensus 82 ----~~~g~~~~------~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~ 151 (226)
|.++...+ ....+.+.+++...|+++-+.|+++++||+.++||+.+||+||||+.|||++|.+.+.++.+
T Consensus 149 ~~~iP~~~~~~~~~~~G~~~L~a~~vL~IMIlPt~as~s~D~~~~VP~~~kea~~ALGAT~wetI~~v~lP~a~~GIv~a 228 (317)
T TIGR02138 149 FGWIPLFGQLFSGPPNGYGLLTAGIVLAIMILPTIASISRDALRAVPRSYKEASLALGATKWETIRKVILPAARSGIVGA 228 (317)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 35323212236899831689999999999999999999999997355678889877068604335553320002189999
Q ss_pred HHHHHHHHHHHH-HHHHHHH---------HHHHHH---------HHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787889875267-9999976---------999999---------9999983235---77999999999999999999999
Q gi|254781113|r 152 LSSEFISILKST-SVASTIT---------IPEIFQ---------TAQRIVSTTY---QPLIIYCELAFVYLILTSFCYII 209 (226)
Q Consensus 152 l~~~~i~lik~t-sl~s~ig---------~~el~~---------~a~~i~~~~~---~~~~~~~~~~~i~l~i~~~~~~l 209 (226)
.+-..-=-+.|| ++.=++| ..++.. .+++.++... ...+.+...+++.++++..++.+
T Consensus 229 ~~LglGRAlGETmAV~mv~Gn~p~~~~~~~~~~f~~~~~T~~~~Ia~~~g~a~~g~~~~~~aL~~~glvLfvitl~~n~~ 308 (317)
T TIGR02138 229 VVLGLGRALGETMAVAMVIGNAPSLNRPIPLNLFSPYGTTITSLIANEFGEASGGNSVHVSALFALGLVLFVITLLVNIL 308 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999972432344441202233568999999985066668884268999999999999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999862
Q gi|254781113|r 210 QIKIESSVT 218 (226)
Q Consensus 210 ~~~lerr~~ 218 (226)
.+.+.||.+
T Consensus 309 ~~~i~~~~~ 317 (317)
T TIGR02138 309 ARYIVRRRK 317 (317)
T ss_pred HHHHHHCCC
T ss_conf 999853069
No 38
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.89 E-value=2.2e-21 Score=136.20 Aligned_cols=204 Identities=20% Similarity=0.205 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHCCC
Q ss_conf 999999999999999999999999999999997-067637999999999998555322222211-12233----321014
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRI-FFSDTIISLIMHFYVWIFRGTPLLVQLFVI-FYGLP----HIGIVF 88 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~-~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~-~f~~~----~~g~~~ 88 (226)
--+++++..|+.+..++.++++++|+..|++.. +.++.++.+..+..++.+-|+|++|.-.+. -|... .++...
T Consensus 57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~~~ 136 (302)
T TIGR00974 57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGGGF 136 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53367799999999999999999999988875530678940056878888752116999999999999977686452206
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 4333333-1001100000157899988752833689986517463565778752235764456778788987526799-9
Q gi|254781113|r 89 DSFVAII-ISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSV-A 166 (226)
Q Consensus 89 ~~~~~~i-i~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl-~ 166 (226)
+.+ ++- +++++-.-|.+.+.-++++++||++++|||.++|++|||+.+||++|-|+|.|+.|+.-..--...||+- .
T Consensus 137 S~l-aG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl 215 (302)
T TIGR00974 137 SAL-AGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLL 215 (302)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778-7999999999999999998999972478888999972600211332244131036899999999999999899999
Q ss_pred HH-HHHHH--------------------H-------HHHHHHHHHC----CCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-76999--------------------9-------9999999832----3577--999999999999999999999999
Q gi|254781113|r 167 ST-ITIPE--------------------I-------FQTAQRIVST----TYQP--LIIYCELAFVYLILTSFCYIIQIK 212 (226)
Q Consensus 167 s~-ig~~e--------------------l-------~~~a~~i~~~----~~~~--~~~~~~~~~i~l~i~~~~~~l~~~ 212 (226)
.. .+..+ + ...-++..++ .++. .+..+..+++.++++..++...+.
T Consensus 216 ~TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~~ 295 (302)
T TIGR00974 216 FTAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIARL 295 (302)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998877641035667776777775422576413688888764014678842688899999999999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9998621
Q gi|254781113|r 213 IESSVTQ 219 (226)
Q Consensus 213 lerr~~~ 219 (226)
+.||.++
T Consensus 296 ~~~~~~~ 302 (302)
T TIGR00974 296 LRRRFKK 302 (302)
T ss_pred HHHHHCC
T ss_conf 9975249
No 39
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.88 E-value=1.7e-20 Score=131.34 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
Q ss_conf 999999999999999999999999999999997067637999999999998555322222211122333210--------
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI-------- 86 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~-------- 86 (226)
..+++.++||+.+++.++++++++|+++|+...+.+.+ .+...+....+.-.+|..+..+.+-...+.-|.
T Consensus 50 ~~~~~~l~nTl~l~~~~~~~~~~lg~~~A~~~~r~~~~-gr~~~~~~~~lPl~~P~~v~a~~~~~l~~~~G~~~~~l~~~ 128 (546)
T TIGR03262 50 PGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIP-GKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGF 128 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 68999999999999999999999999999999805564-69999999999999999999999999983163789998637
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14433333310011000001578999887528336899865174635657787522357644567787889875267999
Q gi|254781113|r 87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 (226)
Q Consensus 87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~ 166 (226)
...++++.++++++...||+...++++++++|++++||||.+|+|+||++|||++|+..|.+..+..-.++..+.|-...
T Consensus 129 ~iy~~~gii~~~~~~~~P~~~l~~~~al~~~d~~l~eaA~~lGa~~~~~f~~i~lPl~~P~i~~~~lLvf~~~l~~Fg~p 208 (546)
T TIGR03262 129 SIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVP 208 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15479999999999999999999999997199899999987299988999994478657999999999999997533258
Q ss_pred HHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9976999--9999999983235779999999999999999999999999998621
Q gi|254781113|r 167 STITIPE--IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 167 s~ig~~e--l~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
.++|... +.....+...... .++.....+++.++++.....+.++.+||-.+
T Consensus 209 ~ilG~~~~tltt~Iy~~~~~~~-d~~~aa~ls~~ll~~~~~~~~~~~~~~~~~~~ 262 (546)
T TIGR03262 209 KVIGGDYNVLATDIYKQVIGQQ-NFPMGAVVGVLLLLPALLAFGIDRAIQRRQRA 262 (546)
T ss_pred HHHCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8843871112799999996278-86899999999999999999999999631353
No 40
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.87 E-value=6e-21 Score=133.77 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCC
Q ss_conf 9999999999999999999999999970676379999999999985553222222111223332101---4433333310
Q gi|254781113|r 21 IVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIV---FDSFVAIIIS 97 (226)
Q Consensus 21 l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~---~~~~~~~ii~ 97 (226)
++||+.++++++++++++|+++|....+.+ +..+...+...++.+.+|.++..+.+.+.++..+.. .......++.
T Consensus 1 l~nSl~i~~~~~~i~~~ig~~~a~~~~~~~-~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (190)
T cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKR-GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIL 79 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 987999999999999999999999999518-5088999999999998039999999999998412322147899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 011000001578999887528336899865174635657787522357644567787889875267999997699
Q gi|254781113|r 98 LTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP 172 (226)
Q Consensus 98 l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~ 172 (226)
..+...|+.....+++++++|++++||||++|+|+||++|||++|++.|.++.+....+...+++.+....+|.+
T Consensus 80 ~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~ 154 (190)
T cd06261 80 ALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999998389999999998699734656998799639999999999999999999999999689
No 41
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.86 E-value=1.3e-20 Score=131.93 Aligned_cols=210 Identities=12% Similarity=0.134 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHCCCCC
Q ss_conf 999999999999999999999999999999970676-379999999999985553222222--11122333--2101443
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSD-TIISLIMHFYVWIFRGTPLLVQLF--VIFYGLPH--IGIVFDS 90 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~-~~~~~~~~~~i~~~r~iP~lv~l~--~~~f~~~~--~g~~~~~ 90 (226)
..+++++||+..+..+.+++.++|++.+....+.++ ++.+...+....+..++|.++... +..|.-+. .+...+.
T Consensus 329 ~~~~a~~nSl~la~~aa~i~~~l~~~~ay~i~r~r~~~~~~~~l~~l~~lp~aiPgiVlalg~i~~f~~~~~~l~~LygT 408 (546)
T TIGR03262 329 GGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNGLYGT 408 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 68999999999999999999999999999999821412679999999985351689999999999985222036788889
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333100110000015789998875283368998651746356577875223576445677878898752679999976
Q gi|254781113|r 91 FVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170 (226)
Q Consensus 91 ~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig 170 (226)
.+.-+++......|+..+..+++++.+|++.+|||+.+|+|++++++||++|+..|.++.+....|+..+||-+....+.
T Consensus 409 ~~iLilay~vr~lp~~~~~i~a~l~qI~~~leeAA~~lGas~~~~~~rI~lPLl~p~ilag~~lvFi~~m~El~~tllL~ 488 (546)
T TIGR03262 409 MALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLY 488 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC
T ss_conf 99999999999999989999999874895099999875979666725320780289999999999999998768787873
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999983-235779999999999999999999999999998621374788
Q gi|254781113|r 171 IPEIFQTAQRIVS-TTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVD 225 (226)
Q Consensus 171 ~~el~~~a~~i~~-~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~~ 225 (226)
-.+.-..+.++.+ ......+...+.+++.++++.....+..+++||..||++--+
T Consensus 489 ~~~~~tl~~~i~~~~~~g~~~~Aaa~s~ilvli~~i~~~l~~~~~rr~~~r~~~~~ 544 (546)
T TIGR03262 489 SPDTKLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRRTQAWR 544 (546)
T ss_pred CCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99980299999998658775889999999999999999999999988446876454
No 42
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3.4e-19 Score=124.11 Aligned_cols=205 Identities=17% Similarity=0.210 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----HH
Q ss_conf 99999999999999999999999999999999706763799999999999855532222221112------23-----33
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFY------GL-----PH 83 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f------~~-----~~ 83 (226)
..+++++++|+..+.+++.+..++|+.+|+.. ..+ ...+...+....+...+|..+....+.+ |. ..
T Consensus 64 ~~f~~al~nT~~~~~~~v~~~~~lgl~lAlll-~~~-~~g~~~~r~~~~lP~~~~~vv~~~iw~~l~~~~~G~~n~~l~~ 141 (295)
T COG1175 64 PTFWNALKNTLVFTVISVPLQLVLGLLLALLL-NRK-LRGRGFFRTLFFLPWAISSVVAGLIWKWLFNPSFGLLNSLLLL 141 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 47999999999999999999999999999998-470-4479999999999989999999999999988763589999998
Q ss_pred HHC------CCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 210------1443---3333310011000001578999887528336899865174635657787522357644567787
Q gi|254781113|r 84 IGI------VFDS---FVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSS 154 (226)
Q Consensus 84 ~g~------~~~~---~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~ 154 (226)
.|. ..++ +.+.+++..+...||.+-++-+|+|+||+++.|||+.+|+|+||++|||++|+..|.+...+.-
T Consensus 142 ~gl~~~~~wl~~~~~A~~~iii~~vW~~~~f~mli~lAgLq~Ip~~lyEAA~iDGA~~~q~f~~ItlP~l~p~i~~~~i~ 221 (295)
T COG1175 142 LGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLIL 221 (295)
T ss_pred HCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05755563413906999999999999998499999999995699999999958999643654541044102799999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8898752679999976999----99999999832357--7999999999999999999999999999862137
Q gi|254781113|r 155 EFISILKSTSVASTITIPE----IFQTAQRIVSTTYQ--PLIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 155 ~~i~lik~tsl~s~ig~~e----l~~~a~~i~~~~~~--~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~ 221 (226)
..+..++.-.+.....-+. -......+.+..|+ .+....+.+++.++++..+.....+..+|..+++
T Consensus 222 ~~i~~~~~Fd~i~~lT~GGP~~~T~~l~~~~y~~af~~~~~G~asA~avil~~i~~~~~~~~~~~~~~~~~~~ 294 (295)
T COG1175 222 RTIFAFQVFDLIYLLTGGGPGNATTTLAYYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRLLRRKERRV 294 (295)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999736999980799962255999999999870066648999999999999999999999987435315
No 43
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.84 E-value=2.1e-20 Score=130.81 Aligned_cols=200 Identities=17% Similarity=0.197 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_conf 899999999999999999999999999999999999999999706763799999999999855532222---22111223
Q gi|254781113|r 5 WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ---LFVIFYGL 81 (226)
Q Consensus 5 w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~---l~~~~f~~ 81 (226)
+|+.+.+ .....+...|+..++.++++=.++|+.+|+...|++.+ -|++.+..+|+.=+.|.-|- +--+|-.-
T Consensus 39 FW~~~~~---P~vlaay~~sf~~Al~Aa~~N~vFG~l~AWVLVRY~FP-GKri~DAlVDLPFALPTAVAGIaL~TlY~~N 114 (265)
T TIGR02139 39 FWQIITE---PRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFP-GKRIVDALVDLPFALPTAVAGIALATLYAPN 114 (265)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999853---89999999999999999999999999998898612475-0577766623354203479999999996288
Q ss_pred HHHHCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 332101443--------333331001100000157899988752833689986517463565778752235764456778
Q gi|254781113|r 82 PHIGIVFDS--------FVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLS 153 (226)
Q Consensus 82 ~~~g~~~~~--------~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~ 153 (226)
+.+|..+.+ -...++|+...+-||+.|.+.==+|++||+.+|||.+||||+||+||||++|...|..+.|
T Consensus 115 GWiG~~l~~lGIKvAfTplGi~~Al~FvsLPFVVRTVQPVL~e~~~E~EEAA~~LGAS~w~tF~~vilP~L~PALLTG-- 192 (265)
T TIGR02139 115 GWIGSFLEPLGIKVAFTPLGIVVALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWKVILPALLPALLTG-- 192 (265)
T ss_pred CCCHHHHHHCCCEEEEECCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCCHHHHH--
T ss_conf 940125855498788720101434233258825731143000588648999765168820002223314440069997--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788987526799999769999999999983----------------2357799999999999999999999999999986
Q gi|254781113|r 154 SEFISILKSTSVASTITIPEIFQTAQRIVS----------------TTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217 (226)
Q Consensus 154 ~~~i~lik~tsl~s~ig~~el~~~a~~i~~----------------~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~ 217 (226)
.++++.-|+||-...--.-++ +.|| .+...+++.+.++++..+-..-+.++.+.
T Consensus 193 ---------~ALaFARa~GEYGSViFIAGN~P~~tEI~PLLI~~kLEqYD-Y~gATaIA~vmL~~SF~~Ll~IN~lQ~~~ 262 (265)
T TIGR02139 193 ---------FALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFIKLEQYD-YAGATAIAVVMLLISFVLLLFINLLQWRA 262 (265)
T ss_pred ---------HHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------89988754323330002226888067889999977754412-37899999999999999999999999975
Q ss_pred HHC
Q ss_conf 213
Q gi|254781113|r 218 TQH 220 (226)
Q Consensus 218 ~~~ 220 (226)
+||
T Consensus 263 ~r~ 265 (265)
T TIGR02139 263 LRY 265 (265)
T ss_pred CCC
T ss_conf 069
No 44
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=7.4e-19 Score=122.28 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226)
.++-|..+|+.+++.++.++.++|+.+|....+++.+ .+.+....++++-++|.++.+..+-..++ ++....+
T Consensus 80 rli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~-vD~ilmri~di~ls~P~lll~i~l~~~lg------~~~~~ii 152 (289)
T COG1173 80 RLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGW-VDRVLMRITDIFLAFPSLLLAILLVAILG------PGLLNLI 152 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHC------CCHHHHH
T ss_conf 9999999999999999999999999999999880761-99999999999997659999999999977------2489899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 1001100000157899988752-8336899865174635657787522357644567787889875267999997699--
Q gi|254781113|r 96 ISLTLNFSAYISEIIRSSIISI-PKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP-- 172 (226)
Q Consensus 96 i~l~l~~~~~~~~i~r~~l~~v-~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~-- 172 (226)
+++++...+..++++|+...++ +++++||||++|+|++++++|+++|+.++.++...+..+-..+...+-.|++|++
T Consensus 153 ial~i~~W~~~AR~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~rhIlPn~~~~iiv~~~l~~~~aIl~ea~LSFLGLG~~ 232 (289)
T COG1173 153 LALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQ 232 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999943999999999999987768999999849992012498862302899999999999999999999999068899
Q ss_pred -------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -------999999999832357799999999999999999999999999986213747
Q gi|254781113|r 173 -------EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 173 -------el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226)
.+...++. ...+.. ......-++...+.+..++.+.+.+++.++.+++.
T Consensus 233 pp~pswG~ml~~~~~-~~~~~~-~w~~l~Pgl~i~l~vl~fnllgdgLrd~~dpr~~~ 288 (289)
T COG1173 233 PPTPSWGTMLAEGRN-YLLTGA-WWLVLFPGLAILLTVLAFNLLGDGLRDALDPRLRR 288 (289)
T ss_pred CCCCCHHHHHHHHHH-HHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 899989999999999-887048-59999989999999999999998899874801026
No 45
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.6e-20 Score=129.51 Aligned_cols=215 Identities=16% Similarity=0.229 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--
Q ss_conf 899999999999999999999999999999999999999999706763799999999999855532222--2211122--
Q gi|254781113|r 5 WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ--LFVIFYG-- 80 (226)
Q Consensus 5 w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~--l~~~~f~-- 80 (226)
|.++..-.-.+..++++.+|+..++.++++..++|++.|+...++. ...+.+.+..+++.-.+|..|. .+...|+
T Consensus 43 ~~~~~~~~~~~~~~~a~~~S~~~a~~atl~~~vfg~~~a~vL~R~~-fpgk~lvdaivDlP~alP~~VaGiaLl~l~~~~ 121 (274)
T COG0555 43 WAGFWSALTSPRVLAALKLTLLTAFAATLLNLVFGLPLAWVLVRYD-FPGKRLVDALVDLPFALPTAVAGIALLLLFGPN 121 (274)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 8999999648989999999999999999999999989989854035-884899999962761375489999999996678
Q ss_pred --HH----HHHC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --33----3210-1443333331001100000157899988752833689986517463565778752235764456778
Q gi|254781113|r 81 --LP----HIGI-VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLS 153 (226)
Q Consensus 81 --~~----~~g~-~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~ 153 (226)
++ ..|+ ......+.++++...+.||..+.++.+++++|++++||||++|+|+||+|++|++|...|.++.+..
T Consensus 122 g~~g~~~~~~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~~~tf~~V~lP~l~pall~G~~ 201 (274)
T COG0555 122 GLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPALLAGFI 201 (274)
T ss_pred CCCHHHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEEHHHCHHHHHHHHH
T ss_conf 74035541247567646789999999970336899889999855688999998648985511142446413389999999
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78898752679999976-----999999999998323577999999999999999999999999999862137
Q gi|254781113|r 154 SEFISILKSTSVASTIT-----IPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 154 ~~~i~lik~tsl~s~ig-----~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~ 221 (226)
-.|.-.+.|---.-+++ ..|..-.--...-.++ ..+.....+++.++++.......+.++.|.+|+.
T Consensus 202 LsfaR~igEfGavl~iAgn~p~~t~~~pl~Iy~~~~~~-d~~~A~ais~vll~iS~~~l~~~r~~~~~~~r~~ 273 (274)
T COG0555 202 LSFARSIGEFGAVLIIAGNTPYKTETLPLLIYTRLESY-DLEAAAAISVVLLLISFILLLVIRLLQSRARRRE 273 (274)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999824546499981477787730389999999837-9357999999999999999999999987642057
No 46
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.84 E-value=1.1e-19 Score=126.86 Aligned_cols=176 Identities=16% Similarity=0.208 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999706763799999999999855532222221112--233321014433333310011000001578999
Q gi|254781113|r 35 SLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFY--GLPHIGIVFDSFVAIIISLTLNFSAYISEIIRS 112 (226)
Q Consensus 35 ~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f--~~~~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~ 112 (226)
|+++|+..| .+++++.+.+...+.++++++|.++....+.. .....+ ......+....+...++.....++
T Consensus 1 Gv~lG~~~a----~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~ 73 (183)
T pfam00528 1 GIPLGIIAA----LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILG---HGILPAIILALLGWAGYARLIRRA 73 (183)
T ss_pred CHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986999999----5078589999999999999834999999999998423667---899999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCH
Q ss_conf 8875283368998651746356577875223576445677878898752679999976----999999999998323577
Q gi|254781113|r 113 SIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT----IPEIFQTAQRIVSTTYQP 188 (226)
Q Consensus 113 ~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig----~~el~~~a~~i~~~~~~~ 188 (226)
+++++|++++||||++|+|+||+++|+++|+++|.+++++...+...+.++..+..++ .+.+...+.... +.
T Consensus 74 ~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~GlG~~~~~a~~~~----d~ 149 (183)
T pfam00528 74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGY----DY 149 (183)
T ss_pred HHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HH
T ss_conf 99706899999999869984341299218989999999999999999999999999936896759999999977----09
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999999998621374
Q gi|254781113|r 189 LIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 189 ~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
.......+...++...++.+.+.+++.+++|.|
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~d~l~~~ldpr~r 182 (183)
T pfam00528 150 -PEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182 (183)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf -999999999999999999999999987391017
No 47
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=99.83 E-value=4.3e-19 Score=123.57 Aligned_cols=209 Identities=13% Similarity=0.167 Sum_probs=125.4
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 999999-----999999999999999999999999999999970676379999999999985553222222111223---
Q gi|254781113|r 10 IDSFPQ-----LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL--- 81 (226)
Q Consensus 10 ~~~~~~-----~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~--- 81 (226)
.++|.+ .+++++++|+..+++.++++.++|+++|... ....| .+...+...-+...+|..+..+.+-+.+
T Consensus 41 l~Ny~~l~~d~~f~~~~~ntl~~~~~~~~~~~~l~l~lA~ll-~~~~~-~~~~~r~~~~lP~~i~~vv~~~~w~~l~~~~ 118 (280)
T PRK10561 41 LDNFVALFHDSYYLDSFWTTIKFSALVTVSGLLVSLFFAALV-DYVVR-GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPG 118 (280)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
T ss_conf 999999987977999999999999999999999999999998-61020-7899999999875531999999999996987
Q ss_pred --------HHHHCCC----C---CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf --------3321014----4---333333100110000015789998875283368998651746356577875223576
Q gi|254781113|r 82 --------PHIGIVF----D---SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTIT 146 (226)
Q Consensus 82 --------~~~g~~~----~---~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~ 146 (226)
...|... + .+...+++..+...||..-++.+|+++||++++|||+.+|+|+||++|+|++|+..|
T Consensus 119 ~G~~n~~l~~~g~~~~~~~~~~~a~~~vi~~~vW~~~g~~~li~lagL~~Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p 198 (280)
T PRK10561 119 RGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP 198 (280)
T ss_pred CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEHHHHHH
T ss_conf 10899999865777754467489999999999999989999999999857997799999976997752331230461059
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4456778788987-5267999997699----999999999832357--79999999999999999999999999998621
Q gi|254781113|r 147 TSAVPLSSEFISI-LKSTSVASTITIP----EIFQTAQRIVSTTYQ--PLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 147 ~ilp~l~~~~i~l-ik~tsl~s~ig~~----el~~~a~~i~~~~~~--~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
.+...+.-..+.. ++...+.....-+ +-......+....+. ......+.+++.++++..+..+..|..||--+
T Consensus 199 ~~~~~~i~~~i~~~~~~f~~i~~~t~GGP~~~t~~l~~~iy~~~f~~~~~g~asA~svil~~i~~~~~~i~~r~~~rkv~ 278 (280)
T PRK10561 199 VSFFLLVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVR 278 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99999999999999965688864368888528899999999999875996199999999999999999999999832112
Q ss_pred C
Q ss_conf 3
Q gi|254781113|r 220 H 220 (226)
Q Consensus 220 ~ 220 (226)
|
T Consensus 279 y 279 (280)
T PRK10561 279 Y 279 (280)
T ss_pred C
T ss_conf 4
No 48
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=99.83 E-value=2.2e-19 Score=125.22 Aligned_cols=204 Identities=16% Similarity=0.196 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---
Q ss_conf 999999999999999999999999999999999999706763799999999999855532222221112------23---
Q gi|254781113|r 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFY------GL--- 81 (226)
Q Consensus 11 ~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f------~~--- 81 (226)
+.+..-+++-+.+|+..++++++..+.+|+.+|+.. ..++-.-+.+.|...-+..++|..+...++-. |.
T Consensus 277 ~~~~~pf~~v~~WT~~fa~~sv~~~~~lGl~lAlll-n~~~~rgr~~~R~l~ilP~avP~~is~lvw~~mfn~~~G~iN~ 355 (520)
T PRK10999 277 EGIQKPFIAIFVWTVVFSLLTVVFTVAVGMVLACLV-QWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINM 355 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 213113566676678999999999999999999982-8756660768999999998999999999999842888657999
Q ss_pred --H-HHHC----CCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf --3-3210----14433---333310011000001578999887528336899865174635657787522357644567
Q gi|254781113|r 82 --P-HIGI----VFDSF---VAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP 151 (226)
Q Consensus 82 --~-~~g~----~~~~~---~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~ 151 (226)
. ..|. ..+|. .+.+++-.+.+.||++-+..+|+|+||+++.|||+.+|+|+||+||+|++|+.+|.+.|-
T Consensus 356 ~L~~l~g~~~~Wl~dp~~A~~~viiv~~W~g~p~~~i~~la~Lq~IP~~lyEAA~iDGA~~~~~f~~ITlPll~~~~~~l 435 (520)
T PRK10999 356 MLSALFGIKPAWFSDPTTARTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPL 435 (520)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHH
T ss_conf 99980599986347969999999999999517299999999871599899999985296565045146720235889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------H-HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787889875267999997699--------------9-99999999832--357799999999999999999999999999
Q gi|254781113|r 152 LSSEFISILKSTSVASTITIP--------------E-IFQTAQRIVST--TYQPLIIYCELAFVYLILTSFCYIIQIKIE 214 (226)
Q Consensus 152 l~~~~i~lik~tsl~s~ig~~--------------e-l~~~a~~i~~~--~~~~~~~~~~~~~i~l~i~~~~~~l~~~le 214 (226)
++..++..++.-.+...+.-+ | +.....+..-+ ....+....+.+++.++++..++.+.-|..
T Consensus 436 li~~~i~~fn~F~~I~llT~GGP~~~~~~~pag~TdiLv~y~Y~~aF~~~~~~~~G~ASAis~iiFiiv~~~s~i~fr~t 515 (520)
T PRK10999 436 MIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALALLNLKAT 515 (520)
T ss_pred HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999625257764348998877788888507679999999998247764550999999999999999999999998
Q ss_pred H
Q ss_conf 9
Q gi|254781113|r 215 S 215 (226)
Q Consensus 215 r 215 (226)
|
T Consensus 516 k 516 (520)
T PRK10999 516 K 516 (520)
T ss_pred H
T ss_conf 4
No 49
>CHL00187 cysT sulfate transport protein; Provisional
Probab=99.82 E-value=2.5e-19 Score=124.89 Aligned_cols=147 Identities=17% Similarity=0.223 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Q ss_conf 99999999999999999999999999999999706763799999999999855532222221112233----------32
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLP----------HI 84 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~----------~~ 84 (226)
...++++.+|+.+++.++++++++|+++|....+.+.| .++..+..+.+...+|..+..+.+....+ ..
T Consensus 49 ~~~~~~~~~Sl~~s~~~t~i~~~ig~~~A~~l~r~~~~-gk~~~~~l~~lP~~iP~~v~a~~~~~~f~~~G~~~~~l~~~ 127 (235)
T CHL00187 49 PIALSAYSLTVSMALIAALINGIFGLLIAWVLVRYNFP-GKRFLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHILSSL 127 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 99999999999999999999999999999999984376-18999999999999789999999999964466176899970
Q ss_pred HCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101-443333331001100000157899988752833689986517463565778752235764456778788987526
Q gi|254781113|r 85 GIV-FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKS 162 (226)
Q Consensus 85 g~~-~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ 162 (226)
+.. ...+...+++..+...||+...++++++++|++.+||||++|+|+||++|||++|+..|.++.+..-.+...+.|
T Consensus 128 ~~~~~~~~~giii~~~~~~~P~~~~~~~~~l~~i~~~leEAA~~lGAs~~~~f~~I~lPll~p~i~a~~~l~f~~~~~e 206 (235)
T CHL00187 128 GIKIVFTKLGVLLAMIFVSLPFVVRTIQPVLQEIEKELEEAAWSLGASPWETFWKVIFPPLIPALLTGLALTFSRAIGE 206 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7651230999999999988799999899999860299999998739995041131217846899999999999999999
No 50
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents a clade of ABC porter genes with relatively weak homology compared to its neighbour clades, the molybdate (IPR006229 from INTERPRO) and sulphate (IPR005667 from INTERPRO) porters. Neighbour-Joining, PAM-distance phylogenetic trees support the separation of these clades in this way. Included in this group are the NifC genes of Clostridium pasteurianum and Pasteurella multocida, which are involved in the biosynthesis and/or control of nitrogenase. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within this group are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulphate porter. There is presently no experimental evidence to support annotations with this degree of specificity.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.82 E-value=1.1e-18 Score=121.31 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 30899999999999999999999999999999999999999999706763799999999999855532222--2211122
Q gi|254781113|r 3 YEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ--LFVIFYG 80 (226)
Q Consensus 3 ~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~--l~~~~f~ 80 (226)
-+|.++...-..+...++++.++.-+..+++.++.+|+|.|+...+.+|...+++.+.++++.=-.|.+|- ..+.-||
T Consensus 5 ~~~s~i~~~L~~~~~~~al~lSl~Ts~~sl~l~~~~g~P~A~~lar~~n~pl~~~l~~ll~LP~VlPPlV~G~aLLl~FG 84 (226)
T TIGR01581 5 LGASEILSALTDPELIKALRLSLLTSLASLLLAVVLGIPTAYVLARVRNFPLKKLLDTLLDLPLVLPPLVAGIALLLLFG 84 (226)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 44388999972599999999999999999999999998899999887506854778999866542466588899999972
Q ss_pred H-HHHHCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3-3321014--------433333310011000001578999887528336899865174635657787522357644567
Q gi|254781113|r 81 L-PHIGIVF--------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP 151 (226)
Q Consensus 81 ~-~~~g~~~--------~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~ 151 (226)
- +.+|..+ .+-.+.++|-.....||+.+..|++++++|++++|+||++|+++.|++|||.+|.+.|.++.|
T Consensus 85 ~~g~lG~~l~~aGi~~~Fs~~gvvlAQ~FVa~p~~vr~~r~~f~~v~~~ye~va~~lG~g~~~t~~~v~lPl~~~~ll~G 164 (226)
T TIGR01581 85 RLGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYLVRVARSTFESVDPDYEDVARSLGAGPLETFRKVTLPLARPGLLAG 164 (226)
T ss_pred HCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 02126899986441678888999999999999999999997673038348999988078722678887577533688887
Q ss_pred HHHHHHHH
Q ss_conf 78788987
Q gi|254781113|r 152 LSSEFISI 159 (226)
Q Consensus 152 l~~~~i~l 159 (226)
.+-.|.=.
T Consensus 165 ~vLafaRa 172 (226)
T TIGR01581 165 LVLAFARA 172 (226)
T ss_pred HHHHHHHH
T ss_conf 99999997
No 51
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=99.82 E-value=3.4e-18 Score=118.60 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122----------33321
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYG----------LPHIG 85 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~----------~~~~g 85 (226)
..++.+++|+.++.+.+++|.++|.|.|..-.+++.++.....-..+ +.=-+..++-.+.+.-. +...|
T Consensus 63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvi-lPfwts~LiR~yawi~iL~~~G~iN~~L~~lG 141 (287)
T COG1176 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVI-LPFWTSLLIRTYAWIVILGRNGLINQALLALG 141 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 89999999999999999999999999999999677379999999999-99989999999999999834771648899768
Q ss_pred CC------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01------443333331001100000157899988752833689986517463565778752235764456778788987
Q gi|254781113|r 86 IV------FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISI 159 (226)
Q Consensus 86 ~~------~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~l 159 (226)
.. .....+.+++++-..-||+..-+.++++.+|++..|||+++|+|++|+||||++|+++|.+..+..-.|+..
T Consensus 142 l~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVFi~a 221 (287)
T COG1176 142 LIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPA 221 (287)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHH
T ss_conf 87886798805336768999986599999999999839978999998759976547642032177189999999998977
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 52679999976999999999998323--577999999999999999999
Q gi|254781113|r 160 LKSTSVASTITIPEIFQTAQRIVSTT--YQPLIIYCELAFVYLILTSFC 206 (226)
Q Consensus 160 ik~tsl~s~ig~~el~~~a~~i~~~~--~~~~~~~~~~~~i~l~i~~~~ 206 (226)
+.+-..-..+|-++-...++.+.++. .+....-.+.+++.++++...
T Consensus 222 lG~fi~P~lLGG~~~~~ig~lI~~q~~~~~nwp~asA~sv~L~~i~~~~ 270 (287)
T COG1176 222 LGSFVTPALLGGPKVLMIGNLIYQQFLSARNWPFASALAVVLLLVVLLL 270 (287)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 5889988985697525399999999852058447899999999999999
No 52
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.8e-19 Score=124.61 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHH-------
Q ss_conf 9999999999999999999999999999999706763799999999999855532222221--1122-33321-------
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFV--IFYG-LPHIG------- 85 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~--~~f~-~~~~g------- 85 (226)
..+.+++.|++.+.+++++++++|+++|....+.+. +.+.+.+..+...--.|.-|.-|. +.|| -+.+|
T Consensus 4 ~~~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~-~~k~ll~~lv~LPLVLPPtV~G~~LLi~fgr~g~iG~~l~~~~ 82 (225)
T COG4149 4 EELTALLLSLKVALISTLLLLPLGIALAYLLARRRF-RGKSLLESLVLLPLVLPPVVLGFLLLVLFGRNGFIGQFLEDWF 82 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 788899999999999999999999999999972557-7630999999732368953899999999747770678999975
Q ss_pred -CC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -01-4433333310011000001578999887528336899865174635657787522357644567787889875267
Q gi|254781113|r 86 -IV-FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKST 163 (226)
Q Consensus 86 -~~-~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~t 163 (226)
.. .-.|.+++++-.+.+-|++..-.|+++++||++.+|||+.+|+|+||+|+||++|.++|.++.+.+-.|
T Consensus 83 g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~~i~LPLalpGIlag~iLsF------- 155 (225)
T COG4149 83 GLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGVILSF------- 155 (225)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHHHHH-------
T ss_conf 9707984489999999998898999999999856845999999818880213100140221067999999999-------
Q ss_pred HHHHHHHHHHH----HHHHHHHHHCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999769999----99999998323577-----------999999999999999999999999999862137
Q gi|254781113|r 164 SVASTITIPEI----FQTAQRIVSTTYQP-----------LIIYCELAFVYLILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 164 sl~s~ig~~el----~~~a~~i~~~~~~~-----------~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~ 221 (226)
.-.++|. |..+|.-+..+-.+ .+.....+++.++++........+++||.+++.
T Consensus 156 ----AralGEFGAtlm~aGNIpG~T~Tlp~aIY~~~q~g~~~~A~~l~li~v~is~~~L~~~~~l~~~~~~~~ 224 (225)
T COG4149 156 ----ARALGEFGATLMFAGNIPGETQTLPLAIYTAVQAGNYALAHRLVLILVVISLLVLFVSEWLARRSSKRL 224 (225)
T ss_pred ----HHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ----998620570798754788853110699999998187889999999999999999999999987642016
No 53
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional
Probab=99.81 E-value=5.2e-18 Score=117.60 Aligned_cols=199 Identities=13% Similarity=0.096 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226)
.+..|..+|+.+++++++++..+|+.+|+...+.++ +.+.+....++++.++|.++....+...++ +.....+
T Consensus 88 rll~G~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG-~~D~il~ri~Dv~~aiP~lll~i~l~~~~g------~~~~~~i 160 (296)
T PRK09881 88 RVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGG-RADAIIMRIMDIMLSIPSLVLTMALAAALG------PSLFNAM 160 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHC------CCHHHHH
T ss_conf 988879999999999999999999999998888176-076655677763015860577788876516------7516888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 1001100000157899988752-8336899865174635657787522357644567787889875267999997699--
Q gi|254781113|r 96 ISLTLNFSAYISEIIRSSIISI-PKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP-- 172 (226)
Q Consensus 96 i~l~l~~~~~~~~i~r~~l~~v-~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~-- 172 (226)
+++++...+..++++|+...++ .++++||||++|+|++++++|+++|+..+.++...+..+...+...+-.|++|++
T Consensus 161 l~i~l~~w~~~aR~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~~~liv~~~~~~~~aIl~ea~LsFLGlG~~ 240 (296)
T PRK09881 161 LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQ 240 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999879999999999999996349999999839886785414276661889999999999999999999999037899
Q ss_pred -------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -------9999999998323577999999999999999999999999999862137478
Q gi|254781113|r 173 -------EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSV 224 (226)
Q Consensus 173 -------el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~ 224 (226)
.+...++..... .+ .....-++...+.+..++.+.+.+++.++=|.|++
T Consensus 241 pp~~sWG~mi~~~~~~~~~--~~-w~~~~Pg~~i~l~vl~~nllgdgLrd~ldPr~r~R 296 (296)
T PRK09881 241 QPSAEWGAMVANGRNYVLD--QW-WYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGK 296 (296)
T ss_pred CCCCCHHHHHHHHHHHHHH--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9998599999999999987--72-99999999999999999999999999819655798
No 54
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=99.80 E-value=1.6e-18 Score=120.49 Aligned_cols=187 Identities=12% Similarity=0.185 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999999999999997--0676379999999999985553222222111223332101443333331
Q gi|254781113|r 19 AAIVVTLPIACISFVISLIIGFFIAVIRI--FFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96 (226)
Q Consensus 19 ~~l~~Tl~~~~~~~~i~~~lg~~la~~~~--~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~ii 96 (226)
.....|+.+++.+|+++.++|++++++.. .-+|+|++.++|...|+.|++|.+|...++-- -..+.|+ +++.
T Consensus 3 ~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~-----~~~LGP~-~~~~ 76 (192)
T TIGR01097 3 TKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLV-----ILSLGPI-AAVL 76 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCH-HHHH
T ss_conf 689999999999999999999999998675258884210478999999977679999999999-----9950518-9999
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00110000015789998875283368998651746356577875223576445677878898752679999976999999
Q gi|254781113|r 97 SLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQ 176 (226)
Q Consensus 97 ~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~el~~ 176 (226)
++++|+.+-+.+++-+..|++|.+..|.-|+.|+|+.+..++-++||.+|....-..-.+..+.+.+++.+.+|.+...-
T Consensus 77 A~~IHT~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~GGIG~ 156 (192)
T TIGR01097 77 ALFIHTIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAGGIGV 156 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999998999999999861589897665233303788999601026768899999999988655556530447872768
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999983235779999999999999999999999999
Q gi|254781113|r 177 TAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKI 213 (226)
Q Consensus 177 ~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~l 213 (226)
.-+.- -+.++ .+-.++..++.++=...+|+++.|+
T Consensus 157 ~L~~~-I~~~~-~~~T~A~~~L~~~T~~~~D~lS~~L 191 (192)
T TIGR01097 157 LLRLA-IRQFQ-EAKTLALVLLLIVTVFLLDFLSARL 191 (192)
T ss_pred HHHHH-HHCCH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998-60330-6889999999999999999987740
No 55
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.80 E-value=3.6e-18 Score=118.52 Aligned_cols=205 Identities=11% Similarity=0.127 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCC
Q ss_conf 999999999999999999999999999999997---0676379999999999985553222222111223332-101443
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRI---FFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHI-GIVFDS 90 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~---~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~-g~~~~~ 90 (226)
..+|+++++|+.++..+.+++..+|++++.... ..+++..+...+....+.-.+|.++...-.+..+... +.....
T Consensus 325 ~~~~~a~~nSl~iA~~aa~la~~lal~la~~~~~~~~r~~~~~~~~l~~~~~lplaiPgiVlg~Gl~ll~~~~~~~~~~~ 404 (536)
T PRK09433 325 PALWQALWTSLRIALLAALLAVLLAMALLLSSRELRLRQKALAAQALELSGMLILAMPGLVLATGLFLLLRNFTDLPQSA 404 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 88999999999999999999999999999999999985010688999999998873329999999999986202456889
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333100110000015789998875283368998651746356577875223576445677878898752679999976
Q gi|254781113|r 91 FVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170 (226)
Q Consensus 91 ~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig 170 (226)
++..+++..+..-||..+...++++++|++++|||+++|+|+|+++|+|++|...|.+..+..-.|+..+||-+.....+
T Consensus 405 ~~ivil~~~l~~lP~a~r~l~~~l~~i~~~le~aA~sLGas~~~~f~~I~lPll~p~i~~a~~l~F~~smgEl~a~~ll~ 484 (536)
T PRK09433 405 LGIVILVNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLVEWRALRRPLAQAFAFACALSLGDFGVIALFG 484 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEC
T ss_conf 99999999999999999999999997017599999886999878969853983099999999999999987537021333
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999983--2357799999999999999999999999999986213
Q gi|254781113|r 171 IPEIFQTAQRIVS--TTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 171 ~~el~~~a~~i~~--~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
-.|.-....++.+ .+++ ++.....+++.+++|..+..+.+|+++|-.+.
T Consensus 485 ~~~~~TLp~~iy~~~~~~~-~~~Aa~~allL~ll~~~~f~l~er~~~~~~~~ 535 (536)
T PRK09433 485 SQDFRTLPYLLYQQLGSYR-SQDAAVTALLLLLLCLLLFTLIERLPGRHAKA 535 (536)
T ss_pred CCCCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9998618999999872767-68899999999999999999999861356678
No 56
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.3e-18 Score=118.74 Aligned_cols=203 Identities=12% Similarity=0.215 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCC--
Q ss_conf 999999999999999999999999999999970676379999999999985553222222111223332-10144333--
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHI-GIVFDSFV-- 92 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~-g~~~~~~~-- 92 (226)
..|++++||+.++..+.+++.++|++++....+.+++ .+...+.......++|-.|...-....+... +...+++.
T Consensus 330 ~~~~a~~nSl~~a~~aa~l~~~~~l~~a~~~~r~~~~-~~~~~~~l~~l~~avPG~Vla~g~l~~~~~~~~~~~~~~~t~ 408 (540)
T COG1178 330 QFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSR-LSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTL 408 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCHHHH
T ss_conf 8999999999999999999999999999999973234-889999998878633699999999999851220000305689
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -3331001100000157899988752833689986517463565778752235764456778788987526799999769
Q gi|254781113|r 93 -AIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITI 171 (226)
Q Consensus 93 -~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~ 171 (226)
..+++..+...|+..+..+++++.+|++.+|||+++|++++|++|+|++|...|.+..+..-.|+..+||-+..-.++-
T Consensus 409 ~ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a~~l~F~~s~~Elsat~lL~~ 488 (540)
T COG1178 409 LILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGS 488 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
T ss_conf 99999999999889999999999877974999998859978779899878730588999999999999755376878638
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999983--2357799999999999999999999999999986213
Q gi|254781113|r 172 PEIFQTAQRIVS--TTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 172 ~el~~~a~~i~~--~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
.|.-..+..+.+ .+.+ .......+.+.++++.....+..+.+++..++
T Consensus 489 ~~~~TL~~~iy~~~~~~~-~~~Aaa~a~il~~~~~~~~~~~~~~~~~~~~~ 538 (540)
T COG1178 489 PGTRTLTVYIYNLLSDGR-YGDAAALALILLVVSLLLFLLLDRLGEGLRRK 538 (540)
T ss_pred CCCEEHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 996109999999803611-68889999999999999999999964022544
No 57
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=99.79 E-value=1.3e-17 Score=115.37 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226)
.++.|..+|+.+++.+++++..+|+.+|.....+++ +.+.+....++++.++|.++..+++...+ + +.....+
T Consensus 61 rll~G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg-~~d~~~~~~~d~~~~iP~lll~i~l~~~~---g---~~~~~~i 133 (272)
T PRK10417 61 RLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGG-RVDQATMRVADMFMTFPTSILSFFMVGVL---G---TGLTNVI 133 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHC---C---CCCHHHH
T ss_conf 999999999999999999999999999999997187-61247777788986286287788888644---8---9725899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 1001100000157899988752-8336899865174635657787522357644567787889875267999997699--
Q gi|254781113|r 96 ISLTLNFSAYISEIIRSSIISI-PKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP-- 172 (226)
Q Consensus 96 i~l~l~~~~~~~~i~r~~l~~v-~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~-- 172 (226)
+++++...+..++++|+...++ .++++||||++|+|++++++|+++|+..|.++.-...++...+...+-.|++|++
T Consensus 134 l~l~l~~w~~~ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~~~i~v~~~~~~~~~Il~~a~LsFLGlG~~ 213 (272)
T PRK10417 134 IAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVIPSLLVLATLDIGHMMLHVAGLSFLGLGVT 213 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999889999999999999999899999999839587783220176763789999999999999999999999047899
Q ss_pred -------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -------9999999998323577999999999999999999999999999862137478
Q gi|254781113|r 173 -------EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSV 224 (226)
Q Consensus 173 -------el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~ 224 (226)
.+...++.... ..+... ...++.....+..++.+.+.+++.++-|.|+.
T Consensus 214 pp~~~WG~ml~~~~~~l~--~~pw~~-~~P~~~i~l~vl~~nllgd~Lrd~ldP~l~~~ 269 (272)
T PRK10417 214 APTAEWGVMINDARQFIW--TQPLLM-FWPGLALFISVMAFNLLGDALRDHLDPHLVTE 269 (272)
T ss_pred CCCCCHHHHHHHHHHHHH--HCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999889999999999999--784999-99999999999999999999999609664554
No 58
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.79 E-value=1.4e-18 Score=120.71 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCC---
Q ss_conf 9999999999999999999999999999999706763799999999999855532222---2211122333210144---
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ---LFVIFYGLPHIGIVFD--- 89 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~---l~~~~f~~~~~g~~~~--- 89 (226)
...+|...|+.+++++.++=.++|+..|+..+|++. +-|.+.+..+|+.=++|.-|- +..+|.--+.+|-.++
T Consensus 66 ~~~~A~~lT~~~aliav~lN~vFG~~~AWvLtR~~F-PGr~lLda~~DLPFAlspvVAGL~l~llYg~~Gw~G~~~~~fg 144 (280)
T TIGR00969 66 NAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQF-PGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFG 144 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCCCCHHHHHHEEEEEECCCCCCCCHHHHCC
T ss_conf 899999999999999999999999999999971269-8258999986213342506753300045357785113230178
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----333333100110000015789998875283368998651746356577875223576445677878898752679
Q gi|254781113|r 90 -----SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164 (226)
Q Consensus 90 -----~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ts 164 (226)
++....++..+.+.||+.|.+.=-+++.-++++|||.++|+|+||+||||++|.-.|..+.|..-.+-=.+.|--
T Consensus 145 iqI~F~~~G~~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~tLGA~~WQtFwRV~LP~i~w~llyGv~Lt~aRAlGEFG 224 (280)
T TIGR00969 145 IQIIFTWPGVALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFG 224 (280)
T ss_pred CEEEEECCCEEEEEEEECCCCEEEEECCCHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCE
T ss_conf 68998412146665342168045431001341385578999862899830267876688726788867876556543011
Q ss_pred ----HHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----9999769999999999-983235779999999999999999999999999998
Q gi|254781113|r 165 ----VASTITIPEIFQTAQR-IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 165 ----l~s~ig~~el~~~a~~-i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
+.|-|-..|++-.-.. -..++|++..++.+.+++ ..++.+.-.+..-+|.|
T Consensus 225 aV~~vSgni~gkt~~lplli~~~l~~Yd~~gA~~ia~vL-~l~slv~L~~~~~Lq~R 280 (280)
T TIGR00969 225 AVVVVSGNIPGKTLTLPLLIFERLEQYDYPGAYVIAAVL-LLVSLVTLFLINLLQAR 280 (280)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 078994468863120156644476603607899999999-99999999999985039
No 59
>PRK10913 dipeptide transporter; Provisional
Probab=99.79 E-value=1.9e-17 Score=114.56 Aligned_cols=197 Identities=15% Similarity=0.199 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226)
.++.|..+|+.+++.+++++..+|+++|....++++ +.+.+....++++.++|.++.++.+...+ | +.....+
T Consensus 93 rll~G~r~Sl~ial~~~~i~~~iG~~iG~iaGy~gG-~vD~~i~r~~di~~aiP~lll~l~l~~~~---g---~~~~~~~ 165 (300)
T PRK10913 93 RLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGG-LVDNIIMRVVDIMLALPSLLLALVLVAIF---G---PSIGNAA 165 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHCC---C---CCHHHHH
T ss_conf 999999999999999999999999999999980388-40788877766660688487768755304---8---7468999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 1001100000157899988752-8336899865174635657787522357644567787889875267999997699--
Q gi|254781113|r 96 ISLTLNFSAYISEIIRSSIISI-PKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP-- 172 (226)
Q Consensus 96 i~l~l~~~~~~~~i~r~~l~~v-~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~-- 172 (226)
+++++...+..++++|+...++ .++++||||++|+|++++++|+++|+.++.++......+...+...+-.|++|++
T Consensus 166 lal~~~~w~~~aR~vR~~vl~~~~~~yV~AAr~~G~s~~rIi~~hIlPnv~~~iiv~~~l~~~~aIl~ea~LsFLGlG~~ 245 (300)
T PRK10913 166 LALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQ 245 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999989999999999999986158999999849997478643342665889999999999999999999999247899
Q ss_pred ----H---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ----9---9999999983235779999999999999999999999999998621374
Q gi|254781113|r 173 ----E---IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 173 ----e---l~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
| +...++.... ..+ ......++...+.+..++.+.+.+++-++-|-|
T Consensus 246 pp~~sWG~ml~~~~~~~~--~~p-w~~~~Pg~~i~l~vl~~nllgdgLrdaldPrlr 299 (300)
T PRK10913 246 PPTPEWGTMLSDVLQFAQ--SAW-WVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299 (300)
T ss_pred CCCCCHHHHHHHHHHHHH--HCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 998839999999999998--483-999999999999999999999999987191017
No 60
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterised in Escherichia coli , Staphylococcus carnosus Rhodobacter capsulatus and Azotobacter vinlandii . Molybdate is chemically similar to sulphate, thiosulphate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulphate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulphate permease proteins and not included in this model.; GO: 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0016021 integral to membrane.
Probab=99.75 E-value=1.8e-17 Score=114.64 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-H-HHHHCCC---------
Q ss_conf 99999999999999999999999997067637999999999998555322222--211122-3-3321014---------
Q gi|254781113|r 22 VVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYG-L-PHIGIVF--------- 88 (226)
Q Consensus 22 ~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~-~-~~~g~~~--------- 88 (226)
+.|++.+.+++++.+++|+++|....+++.++ |.+.+..+...==.|.-|.- .+..|| - +.+|...
T Consensus 1 ~LSlk~A~~~Tl~~~~LGi~~A~~La~~~f~g-K~~le~L~~LPLVLPPtV~Gf~LL~~fG~~~G~~G~l~~~~~~~Gl~ 79 (212)
T TIGR02141 1 LLSLKVAVIATLLLLPLGIPVAWLLARSRFRG-KSLLEALVTLPLVLPPTVLGFYLLLAFGRNSGPIGKLLELLGISGLV 79 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHH
T ss_conf 77999999999999999999999998861760-45446444326635637899999998803574077898865068524
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43333331001100000157899988752833689986517463565778752235764456778788987526799999
Q gi|254781113|r 89 DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVAST 168 (226)
Q Consensus 89 ~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ 168 (226)
-.|.+++++-.+++-|++.+-.+++++++|++.+|+||.+|+|++++||||+||.+.|.++.+.+ +.+.
T Consensus 80 Ft~~g~vlAs~~VSfPl~v~~~~~a~~~~~~~~~~~ArtLGaS~~~~f~~v~LPL~~pG~l~G~v-----------L~FA 148 (212)
T TIGR02141 80 FTFAGAVLASVVVSFPLMVRTIRGAFEAVDPDLEEAARTLGASELRVFLKVTLPLAFPGLLAGAV-----------LSFA 148 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_conf 66999999999999776899999999862712899998827878998999985732899999999-----------9999
Q ss_pred HHHHH----HHHHHHHHHHCC------CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76999----999999998323------57------79999999999999999999999999998
Q gi|254781113|r 169 ITIPE----IFQTAQRIVSTT------YQ------PLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 169 ig~~e----l~~~a~~i~~~~------~~------~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
-++|| +|..||.-++.+ |+ ..+.......+.++++...-...++++||
T Consensus 149 R~LGEFGAtlm~aGNIpGkT~T~plaIY~~v~~lg~~~~A~~l~l~ll~~s~~~ll~~~~~~~R 212 (212)
T TIGR02141 149 RALGEFGATLMFAGNIPGKTRTIPLAIYDAVESLGDYEAAHLLSLVLLALSLIVLLLVELLNKR 212 (212)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7502113443100469796301767788677057886789999999999999999999875059
No 61
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.1e-15 Score=104.88 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226)
.++..++||+.+++.++++++.+|.+.|..-.+.+.+..+.+ -..+-.-.-+|..+.+.=.|......|.. |..++.+
T Consensus 70 ~~~~~~~NS~iva~~~t~l~~~~~~laaYalar~~f~g~~~l-~~~~l~~~m~P~~v~~iPl~~~~~~lgl~-nt~~gli 147 (281)
T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLL-FLLLLLTLMLPAQVLLIPLYLLMRKLGLL-NTYWGLI 147 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHH
T ss_conf 899999989999999999999999998999998533609999-99999999856999999899999982661-0479999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10011000001578999887528336899865174635657787522357644567787889
Q gi|254781113|r 96 ISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFI 157 (226)
Q Consensus 96 i~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i 157 (226)
+.....+.|+..=++|+-++++|++.+||||.+|+|+||+++||++|.+.|.+.....-.++
T Consensus 148 l~~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~P~iaa~aI~~fi 209 (281)
T COG0395 148 LPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFI 209 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999988899999999998698999999998289657899999987037899999999999
No 62
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=99.73 E-value=4.1e-16 Score=107.23 Aligned_cols=205 Identities=15% Similarity=0.154 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHHCC
Q ss_conf 999999999999999999999999999999997067637999999999998555322222--2111223-----332101
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYGL-----PHIGIV 87 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~~-----~~~g~~ 87 (226)
+.+.+.+.+|+.++..+.+++..+|+++|+.....++++.+.....+..+..++|..++. +...|+. |..|..
T Consensus 90 ~~i~~~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~lallli~if~~~l~~~P~~G~~ 169 (339)
T PRK10914 90 EEFVPRFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRV 169 (339)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99987272589999999999999999999999985275111367888986123069999999999999995747776767
Q ss_pred CC--------------------------------CCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHH
Q ss_conf 44--------------------------------3333331001100000157899988-75283368998651746356
Q gi|254781113|r 88 FD--------------------------------SFVAIIISLTLNFSAYISEIIRSSI-ISIPKGQWDASYAIGLTRKQ 134 (226)
Q Consensus 88 ~~--------------------------------~~~~~ii~l~l~~~~~~~~i~r~~l-~~v~~~~~EAA~alG~s~~q 134 (226)
-+ ....-++++++...++.++..|+.+ +..++++++.||+-|.++++
T Consensus 170 ~~~~~~~~~~p~~g~~~~~~~~~g~~~~~~~~l~hliLP~l~L~l~~~a~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~ 249 (339)
T PRK10914 170 SDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMR 249 (339)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 65312466666554100111420451137889999999999999999999999999999999834999999985949331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 57787522357644567787889875267999997----6999999999998323577999-999999999999999999
Q gi|254781113|r 135 TIRHIILPQTITTSAVPLSSEFISILKSTSVASTI----TIPEIFQTAQRIVSTTYQPLII-YCELAFVYLILTSFCYII 209 (226)
Q Consensus 135 ~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~i----g~~el~~~a~~i~~~~~~~~~~-~~~~~~i~l~i~~~~~~l 209 (226)
+++|++++.+++.+++.+..++..++.++-+.-.+ |++.++..+ +.++++..... ....++.+++.....+.+
T Consensus 250 i~~~h~lrnal~P~it~~g~~~~~ll~GsvivE~vF~~pGiG~l~~~A--i~~rD~pvi~g~~l~~~~~~i~~nli~Dil 327 (339)
T PRK10914 250 VIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDA--LQRRDYPVVQGGVLLVATMIILVNLLVDLL 327 (339)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 404983986099899999999999997699986986775769999999--983588999999999999999999999999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999862137
Q gi|254781113|r 210 QIKIESSVTQHT 221 (226)
Q Consensus 210 ~~~lerr~~~~~ 221 (226)
..+++.|++++|
T Consensus 328 ~~~lDPRiR~kr 339 (339)
T PRK10914 328 YGVVNPRIRHKK 339 (339)
T ss_pred HHHCCCCCCCCC
T ss_conf 986284047889
No 63
>PRK10352 nickel transporter permease NikB; Provisional
Probab=99.73 E-value=4.1e-16 Score=107.22 Aligned_cols=206 Identities=14% Similarity=0.201 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHHC-
Q ss_conf 999999999999999999999999999999997067637999999999998555322222--211122-----333210-
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYG-----LPHIGI- 86 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~-----~~~~g~- 86 (226)
+.+.+.+.+|+.+++.+.+++.++|+++|+....+++++.+.....+..+..++|..+.. +...|. +|..|.
T Consensus 92 ~~I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~~fa~~l~~~P~~g~~ 171 (314)
T PRK10352 92 DDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYG 171 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98887637889999999999999985999998720797210131058998787319999999999999964767876778
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1443333331001100000157899988-752833689986517463565778752235764456778788987526799
Q gi|254781113|r 87 VFDSFVAIIISLTLNFSAYISEIIRSSI-ISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSV 165 (226)
Q Consensus 87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l-~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl 165 (226)
.......-++++++...++.++..|+.+ +..++++++.||+.|.|++++++|+.+|.+++.+++.+..++..++.++-+
T Consensus 172 ~~~~liLP~l~l~l~~~a~~~r~~R~~~~e~l~~dyv~~ArakGls~~~i~~rh~lrnal~P~it~~~~~~~~ll~Gavi 251 (314)
T PRK10352 172 GWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLSDRQVERRHILRNASLPMITAVGMHIGELIGGTMI 251 (314)
T ss_pred CHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 33654111999999999999999999999986329999999869893136086528742988999999999998477610
Q ss_pred H----HHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9----9976999999999998323577999-9999999999999999999999998621374
Q gi|254781113|r 166 A----STITIPEIFQTAQRIVSTTYQPLII-YCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 166 ~----s~ig~~el~~~a~~i~~~~~~~~~~-~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
. +.-|.+.+...+ +.++++...+. ....++.+++.....|.+..+++-|+++.+-
T Consensus 252 vE~iF~~pGlG~ll~~A--i~~rD~p~v~g~~l~~~~~~v~~nli~Dily~~lDPRiR~~~g 311 (314)
T PRK10352 252 IENIFAWPGVGRYAVSA--IFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEG 311 (314)
T ss_pred EEHHHCCCCHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 01875476759999999--9813889999999999999999999999999964863157899
No 64
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=99.72 E-value=1e-15 Score=105.04 Aligned_cols=204 Identities=16% Similarity=0.251 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHHHH
Q ss_conf 99999999999999999999999999999999997067637999999999998555322222--211122-----33321
Q gi|254781113|r 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYG-----LPHIG 85 (226)
Q Consensus 13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~-----~~~~g 85 (226)
..+.+.+.+.+|+.+++.+.+++.++|+++|+.....++++.+........+..++|..+.. ++..|. +|..|
T Consensus 86 V~~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~iF~~~l~~~P~~g 165 (306)
T PRK09471 86 VNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVMIFAIILHWLPGGG 165 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999988899999999999999999999999999834751619999999999998999999999889997217637788
Q ss_pred CCCC---CCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0144---3333331001100000157899988-75283368998651746356577875223576445677878898752
Q gi|254781113|r 86 IVFD---SFVAIIISLTLNFSAYISEIIRSSI-ISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILK 161 (226)
Q Consensus 86 ~~~~---~~~~~ii~l~l~~~~~~~~i~r~~l-~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik 161 (226)
...+ ....-++++++...+..++..|+.+ +..++++++.||+.|.+++++++|++++.|++.+++.+..++..++.
T Consensus 166 ~~~~~~~~liLP~~~l~l~~~~~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~ 245 (306)
T PRK09471 166 WNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIIT 245 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87520788753699999999999999999999999877999999986998400730012984299999999999999845
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67999----9976999999999998323577999-999999999999999999999999862
Q gi|254781113|r 162 STSVA----STITIPEIFQTAQRIVSTTYQPLII-YCELAFVYLILTSFCYIIQIKIESSVT 218 (226)
Q Consensus 162 ~tsl~----s~ig~~el~~~a~~i~~~~~~~~~~-~~~~~~i~l~i~~~~~~l~~~lerr~~ 218 (226)
++-+. +.-|.+.+...+ +.++++...+. ....++.+++.....|.+..+++-|.+
T Consensus 246 GsvivE~iF~~PGiG~l~~~A--i~~~D~p~v~g~~l~~a~~~i~~nll~Dil~~~lDPRiR 305 (306)
T PRK09471 246 GSMVIETIFGLPGIGQLFVNG--ALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305 (306)
T ss_pred CHHHHHHHHCCCCHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 871210986476759999999--980498999999999999999999999999997297558
No 65
>PRK10998 malG maltose transporter permease; Provisional
Probab=99.70 E-value=4.2e-15 Score=101.64 Aligned_cols=144 Identities=17% Similarity=0.110 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCC
Q ss_conf 999999999999999999999999999999706763799999999999855532222221112233321014-----433
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVF-----DSF 91 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~-----~~~ 91 (226)
+...++||+.++..++++++++|.+.|..-.+.+.|..+.+ ...+-...-+|..+.+.-.|......|... +..
T Consensus 81 ~~~~~~NSl~va~~~~v~~l~~~~~aaYalar~~f~g~~~l-~~~~l~~~~iP~~~~~ip~~~~~~~lgl~~~~~~l~t~ 159 (296)
T PRK10998 81 VLLWLWNSVKIAGITAIGIVALSTTCAYAFARMRFPGKATL-LKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTH 159 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999999999999999999999999998731215558999-99999999988999999999999996020220133224
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33331001100000157899988752833689986517463565778752235764456778788987526
Q gi|254781113|r 92 VAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKS 162 (226)
Q Consensus 92 ~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ 162 (226)
. +++...+...|+..-+.|+.++++|++.+|||+.+|+|+||++|||++|.+.|.+.....-.++....|
T Consensus 160 ~-~ii~~~~~~~~~~i~ll~~ff~~iP~el~EAA~iDGas~~~~f~~IilPl~~P~i~t~~i~~fi~~WNe 229 (296)
T PRK10998 160 G-GVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITE 229 (296)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9-999999999999999999998629798999999859977779787678625999999999999999999
No 66
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=9.8e-15 Score=99.63 Aligned_cols=205 Identities=14% Similarity=0.223 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHHC
Q ss_conf 9999999999999999999999999999999997067637999999999998555322222--2111223-----33210
Q gi|254781113|r 14 PQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL--FVIFYGL-----PHIGI 86 (226)
Q Consensus 14 ~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l--~~~~f~~-----~~~g~ 86 (226)
.+.+.+.+.+|+.+++.+.+++.++|+++|......++++.+...+...-+..++|..+.. +...|+. |..|.
T Consensus 88 ~~~I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~~~~~~~siP~F~~~~lli~~f~~~l~~~P~~g~ 167 (317)
T COG0601 88 ADLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSVKLGWLPVGGR 167 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999884999999999999999999999999994489759999999999999602999999999999999676898887
Q ss_pred C-----------CCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1-----------443333331001100000157899988-7528336899865174635657787522357644567787
Q gi|254781113|r 87 V-----------FDSFVAIIISLTLNFSAYISEIIRSSI-ISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSS 154 (226)
Q Consensus 87 ~-----------~~~~~~~ii~l~l~~~~~~~~i~r~~l-~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~ 154 (226)
. ......-++++++...+..++..|+.+ +...++++++||+-|.+++++.+|+.++.|+-..++...-
T Consensus 168 ~~~~~~~~~~~~~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~kH~lrNa~iP~vt~~~~ 247 (317)
T COG0601 168 GSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGL 247 (317)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHH
T ss_conf 88651567999999999999999999999999999999999986689999998799925103986337648889999999
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8898752679999----976999999999998323577-99999999999999999999999999986213
Q gi|254781113|r 155 EFISILKSTSVAS----TITIPEIFQTAQRIVSTTYQP-LIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226)
Q Consensus 155 ~~i~lik~tsl~s----~ig~~el~~~a~~i~~~~~~~-~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226)
++..++.++-+.- .-|++.++..+ +.++++.. +......++++++.....|.+...++.|.++.
T Consensus 248 ~~~~ll~GavivE~iF~~pGiG~l~~~A--i~~~D~p~i~g~~~~~~~~~i~~nli~Dily~~lDPRir~~ 316 (317)
T COG0601 248 QLGGLLGGAVVVETVFSWPGLGRLLVDA--ILNRDYPVVQGIVLVIALLVILGNLLVDILYALLDPRIRLG 316 (317)
T ss_pred HHHHHHHCHHHHHHHCCCCCHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999984687873540877849999999--98248499999999999999999999999999649756688
No 67
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.7e-14 Score=98.29 Aligned_cols=201 Identities=19% Similarity=0.187 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226)
..+.-.+||+.++.+..++.+.+..+.|..-.+.+.+-.+.. -.+.-++.-.|.+.-+..+|..+...| ..+..++-+
T Consensus 70 ~y~~W~~Nsliva~~t~~i~v~~~~~~aYafSR~rF~GRk~~-L~~~Li~qMfP~~~aliAlY~l~~~lg-llnt~~gLi 147 (282)
T COG3833 70 PYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYL-LKFFLILQMFPGVAALIALYVLLKLLG-LLNTLWGLI 147 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHH
T ss_conf 789999999999999999999999998988998626558999-999999999899999999999999965-711678999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 100110000015789998875283368998651746356577875223576445677878898752679999976-9999
Q gi|254781113|r 96 ISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT-IPEI 174 (226)
Q Consensus 96 i~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig-~~el 174 (226)
++-.=...|+-+=++++-++++|++..|||+.+|+|+||+|+||++|.+.|.+.-.....|++-..|-.+++.+= -+|-
T Consensus 148 l~Y~gG~ip~n~~l~Kgy~DTIP~sldEaA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL~~~~~ 227 (282)
T COG3833 148 LAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLLRDPEN 227 (282)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99964732688999984450389567999865485068999999986000599999999987577999999999748155
Q ss_pred HHHHHHH---HHCCCC-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999---832357-799999999999-9999999999999999862
Q gi|254781113|r 175 FQTAQRI---VSTTYQ-PLIIYCELAFVY-LILTSFCYIIQIKIESSVT 218 (226)
Q Consensus 175 ~~~a~~i---~~~~~~-~~~~~~~~~~i~-l~i~~~~~~l~~~lerr~~ 218 (226)
...+-.. .+..+. ....|.+.+++. +=++..+..++|++-+.++
T Consensus 228 ~TlavGL~~~~~~~~~~~~~~FAAgAvL~alPi~iLF~~lQk~~VsGlT 276 (282)
T COG3833 228 YTLAVGLQSFLNGPQNTNWGLFAAGAVLIALPITILFLVLQKYLVSGLT 276 (282)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 4259999999367210269999999999864199999999999972322
No 68
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional
Probab=99.66 E-value=6.1e-14 Score=95.26 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999999999999999970676379999999999985553222222111223332101443333331
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~ii 96 (226)
++..+.||+.+++.+++++++++.+.|..-.+.+.|..+.+... .-...-+|..+.+.=.|......|.. +...+-+
T Consensus 73 f~~~~~NSliva~~~~~~~~~~~~~aaYalsr~~f~~~~~~~~~-~l~~~~iP~~~~~iP~~~~~~~lgl~-~t~~gli- 149 (281)
T PRK10973 73 FGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWM-IFITLMLPVEVRIFPTVEVIANLKML-DSYAGLT- 149 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHH-
T ss_conf 99999999999999999999999999999998405419999999-99999989999999999999993971-1089999-
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 001100000157899988752833689986517463565778752235764456778788987526
Q gi|254781113|r 97 SLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKS 162 (226)
Q Consensus 97 ~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ 162 (226)
+.....++..-++|+-++++|++.+|||+.+|+|+||+++||++|.+.|.+..-..-.++...-|
T Consensus 150 -l~~~~~~~~i~l~~~f~~~IP~el~EAA~iDGas~~~~f~~IilPl~kP~i~tv~i~~fi~~WNe 214 (281)
T PRK10973 150 -LPLMASATATFLFRQFFMTLPDELVEAARIDGAGPMRFFWDIVLPLSKTNLAALFVITFIYGWNQ 214 (281)
T ss_pred -HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHH
T ss_conf -99999999999999999768888999999819867778154100265999999999999999997
No 69
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=99.64 E-value=1.5e-14 Score=98.64 Aligned_cols=191 Identities=23% Similarity=0.316 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999999999999999970676379999999999985553222222111223332101443333331
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~ii 96 (226)
+.-|..+||..+.+.......+|+.+|....+.+. +.+.+.-.+.|++=+.|..++.+.+ +|+.-+++.-.++
T Consensus 57 l~~G~R~SLg~al~~l~~~~~iG~~iG~~aGy~GG-~vD~~~MR~~D~~lsfPt~~L~L~i------vG~lG~Gl~nvii 129 (258)
T TIGR02790 57 LLFGARVSLGLALLVLGLVLVIGVLIGLIAGYIGG-RVDEVIMRVCDVFLSFPTIVLALAI------VGLLGPGLENVII 129 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHEEHHHHHHHHHHHHHHHHHHHH------HHHHCCCHHHHHH
T ss_conf 99999999999999999999999999998530154-0200025547588755789999999------8574347999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 001100000157899988752-8336899865174635657787522357644567787889875267999997699---
Q gi|254781113|r 97 SLTLNFSAYISEIIRSSIISI-PKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP--- 172 (226)
Q Consensus 97 ~l~l~~~~~~~~i~r~~l~~v-~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~--- 172 (226)
|+.+...++.||++|+-+-|. .|+.++|||+.|.|+||+++||++|..++.++-=-+-+.--.+.+-|=.|++|++
T Consensus 130 A~vl~~Wa~YAR~vRg~v~Slk~~~fvlaar~~g~s~~~ii~rHi~~~i~~~iiVLaTLeiG~~il~ia~LSFLGLGiQP 209 (258)
T TIGR02790 130 ALVLVQWAWYARMVRGMVVSLKQKEFVLAARASGASHWQIIRRHILPNILSPIIVLATLEIGHVILHIAALSFLGLGIQP 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99997547899999999999986889999999758984450421132101479999968999999999876674237898
Q ss_pred ---H---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---9---99999999832357799999999999999999999999999986
Q gi|254781113|r 173 ---E---IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217 (226)
Q Consensus 173 ---e---l~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~ 217 (226)
| +...|++.. +|+-..-.|-..+++ .-+..+|.+.+-++.++
T Consensus 210 PtPEWG~Ml~eak~y~-~t~P~lmiyPG~ail--~~V~~FNllGd~Lrd~l 257 (258)
T TIGR02790 210 PTPEWGIMLSEAKEYL-RTQPELMIYPGLAIL--ITVMAFNLLGDSLRDAL 257 (258)
T ss_pred CCCHHHHHHHHHHHHH-HHCHHHHHHHHHHHH--HHHHHHHHHHHHHCCCC
T ss_conf 7834564688768988-627178888659999--99999973335640545
No 70
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.7e-13 Score=92.86 Aligned_cols=194 Identities=14% Similarity=0.151 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHC-----
Q ss_conf 99999999999999999999999999999970676379999999999985553222-22211122----333210-----
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLV-QLFVIFYG----LPHIGI----- 86 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv-~l~~~~f~----~~~~g~----- 86 (226)
.+.-++||+..+....+++++..+.+|+....-++...++.....+- .|-.+ +....++. -++-|+
T Consensus 77 ff~i~rNTl~~s~~~li~gf~~pI~lAillnElr~~~~kk~~QT~~y----~PhFlSWVVv~~~v~~fls~d~GiiN~ll 152 (309)
T COG4209 77 FFIILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKVVQTISY----LPHFLSWVVVSGFVFAFLSIDGGIINQLL 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCHHEEEHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999999999999953799999999999987778888766333----00021003056578876366751899999
Q ss_pred -----------CCCCCCCCCC-CH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------1443333331-00-1100000157899988752833689986517463565778752235764456778
Q gi|254781113|r 87 -----------VFDSFVAIII-SL-TLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLS 153 (226)
Q Consensus 87 -----------~~~~~~~~ii-~l-~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~ 153 (226)
..+.++..++ .. .+-..+|-.-++.+++.+||+.++|||+.+||||||..|||++|+..|.+.-
T Consensus 153 ~~~g~~pi~fl~~~~wf~~i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivI--- 229 (309)
T COG4209 153 MSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVI--- 229 (309)
T ss_pred HHCCCCCEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHH---
T ss_conf 98289831021588602678878988842367889999999727999999998054887788882110323149999---
Q ss_pred HHHHHHHH---HHH--HHHH------HHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78898752---679--9999------7699999-99999983235779999999999999999999999999998621
Q gi|254781113|r 154 SEFISILK---STS--VAST------ITIPEIF-QTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 154 ~~~i~lik---~ts--l~s~------ig~~el~-~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
..+..+. ++. .... -.+.|.. .+....+..+ ..+..-.++++.=-+++.++..+..++.||++.
T Consensus 230 -llIL~iG~i~~~gFe~~yll~~~~~~~v~~vldtYVy~~gl~~-Gd~s~sTAaGlf~svVg~iLl~~aN~iakr~~~ 305 (309)
T COG4209 230 -LLILNIGNIFNAGFELFYLLPNPSGYDVTEVLDTYVYRGGLVT-GDYSYSTAAGLFQSVVGFILLFLANRIAKRFDN 305 (309)
T ss_pred -HHHHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -9999852376537256066057668748989999999810135-751189999999999999999999999997062
No 71
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.47 E-value=6.7e-13 Score=89.56 Aligned_cols=188 Identities=16% Similarity=0.222 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHH----HH---HHHCC
Q ss_conf 9999999999999999999999999999997067637999999999998555-3222-22211122----33---32101
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGT-PLLV-QLFVIFYG----LP---HIGIV 87 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~i-P~lv-~l~~~~f~----~~---~~g~~ 87 (226)
-.+|+..|+.++.++..+=+++|+..|+.-++++.|- |...-.++|+.=++ |.+. +.+++-|| -. .-|..
T Consensus 45 ~~sA~~LTlLv~~I~VPlN~~FGv~~Aw~~~rf~FpG-k~lL~t~iDlPFSVSPVvAGL~~~LLyGrqGW~~PliedGvr 123 (275)
T TIGR02140 45 ALSAIKLTLLVALIVVPLNTVFGVAAAWVLTRFQFPG-KRLLLTIIDLPFSVSPVVAGLIFVLLYGRQGWSQPLIEDGVR 123 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCC
T ss_conf 8999989886676533078899999999987431674-576777776044322489999999984310013622343420
Q ss_pred CCC----------------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 443----------------3333310011000001578999887528336899865174635657787522357644567
Q gi|254781113|r 88 FDS----------------FVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP 151 (226)
Q Consensus 88 ~~~----------------~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~ 151 (226)
+++ .-+-+++-.+.++||++|-+-==+|.--++|+|||..||+|.||+||||++|. |==+
T Consensus 124 fsG~lG~~l~~~d~~IiF~~PGivLAT~FVT~PFVAREliPvl~~qG~~~EeAAltLGAs~WqtFwrVTLPn----IkWg 199 (275)
T TIGR02140 124 FSGWLGPWLEDRDIKIIFSLPGIVLATIFVTLPFVARELIPVLEEQGTEQEEAALTLGASWWQTFWRVTLPN----IKWG 199 (275)
T ss_pred EECCCHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCC----CHHH
T ss_conf 004202788862885887141341023432588012200113631594689999872776223335661687----1578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787889875267999997699999-----------------999999832357799999999999999999999999999
Q gi|254781113|r 152 LSSEFISILKSTSVASTITIPEIF-----------------QTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIE 214 (226)
Q Consensus 152 l~~~~i~lik~tsl~s~ig~~el~-----------------~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~le 214 (226)
+.-.. -|+..=.+||.. -.-+.. ..+|+.-.+|..+.++ ..++.+--.+..-+|
T Consensus 200 LlYG~-------~LcnARamGEFGAVsVVSG~IrG~TnTLPL~Ve~l-Y~~Y~~~AAFA~AslL-al~Al~TL~lK~~LE 270 (275)
T TIGR02140 200 LLYGV-------ILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELL-YNEYQSEAAFAAASLL-ALLALVTLVLKAILE 270 (275)
T ss_pred HHHHH-------HHHCCHHHCCCCCEEEEECCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 98546-------77513020021125688526899987632432323-2401347889999999-999999999999998
Q ss_pred HHHH
Q ss_conf 9862
Q gi|254781113|r 215 SSVT 218 (226)
Q Consensus 215 rr~~ 218 (226)
||-.
T Consensus 271 ~r~~ 274 (275)
T TIGR02140 271 RRQG 274 (275)
T ss_pred HHCC
T ss_conf 6406
No 72
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.44 E-value=1.3e-11 Score=82.44 Aligned_cols=189 Identities=15% Similarity=0.248 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999999999999999999970676379999999999985553222222111223332101443333331
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~ii 96 (226)
+.-|+.+++..++.-++++.++|+..|.....++. +.+.....++|+..++|.+-++.++...++ +.++....
T Consensus 136 liygfRiSvLfgL~lT~~SaliGv~~GA~qGyfgg-~vdL~~QRfIEvws~mP~lyllii~as~~~------p~f~~ll~ 208 (341)
T COG4239 136 LIYGFRISVLFGLSLTLISALIGVLAGALQGYFGG-WVDLLGQRFIEVWSGMPTLYLLIILASIFQ------PNFWWLLG 208 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHC------CCHHHHHH
T ss_conf 99999999999999999999999988877534130-048877059999844729999999999968------54799999
Q ss_pred CHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---
Q ss_conf 00110000015789998-87528336899865174635657787522357644567---787889875267999997---
Q gi|254781113|r 97 SLTLNFSAYISEIIRSS-IISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP---LSSEFISILKSTSVASTI--- 169 (226)
Q Consensus 97 ~l~l~~~~~~~~i~r~~-l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~---l~~~~i~lik~tsl~s~i--- 169 (226)
...+++.--.+.++|+- ++.=+-+++.|||++|.+..++++|+++|.|+...+.- +.+.-+.-+ | -..++
T Consensus 209 i~llf~Wm~lv~vvRaefLr~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTl--t-sLdFLgfg 285 (341)
T COG4239 209 IMLLFGWMSLVGVVRAEFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTL--T-SLDFLGFG 285 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHH--H-HHHHHCCC
T ss_conf 99999999999999999998602688999997398865030213262988999998789870633230--0-16665269
Q ss_pred ------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------69999999999983235779999999999999999999999999998621
Q gi|254781113|r 170 ------TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 170 ------g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
+++|+..++|...+.-.-....+.+..++.- .+..+....++..+.
T Consensus 286 lp~gspSLGELl~qgk~nlqapWlgit~fv~l~~~ls----lLvfIgea~Rdafdp 337 (341)
T COG4239 286 LPPGSPSLGELLNQGKNNLQAPWLGITAFVVLSLLLS----LLIFIGEAVRDAFDP 337 (341)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC
T ss_conf 9999967899999765247784255889999999999----999942998863150
No 73
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=99.44 E-value=1.8e-12 Score=87.25 Aligned_cols=205 Identities=17% Similarity=0.261 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-----HHHHHCC
Q ss_conf 999999999999999999999999999999997067637999999999998555322--222211122-----3332101
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL--VQLFVIFYG-----LPHIGIV 87 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~l--v~l~~~~f~-----~~~~g~~ 87 (226)
|.+..-+..|++.+..|.++...+.+|+|+....+++++.++.+|.+..+..++|.. ..+..+.|. +|..|.+
T Consensus 93 De~~~~LPaTl~LA~~aL~i~vlvSvPLG~LAA~~r~~~~D~~~R~~~FlG~siPnFWLA~LLv~~fsvyL~lLP~~G~g 172 (315)
T TIGR02789 93 DEVARSLPATLELAGLALVIVVLVSVPLGILAARYRDRLPDHAVRFISFLGVSIPNFWLAFLLVFLFSVYLDLLPVEGAG 172 (315)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 88974353889999999999999984088999887368640789999999643056899999999999986133767787
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4-43333331001100000157899988-752833689986517463565778752235764456778788987526799
Q gi|254781113|r 88 F-DSFVAIIISLTLNFSAYISEIIRSSI-ISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSV 165 (226)
Q Consensus 88 ~-~~~~~~ii~l~l~~~~~~~~i~r~~l-~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl 165 (226)
. .-...-.+++++...+-.++.+|+++ ++.-+.++.=||.=|..+.|+.+|++||.|.-..+.+++=....++.+|-+
T Consensus 173 tW~HlvLP~~tlal~~~a~y~RLLRaS~Ld~~qe~yv~yAR~RGi~~~~v~~~H~Lrna~~p~iTA~GM~~g~Ll~GT~v 252 (315)
T TIGR02789 173 TWQHLVLPAVTLALMSVAIYARLLRASMLDNLQERYVTYARVRGIKERNVIRRHILRNAILPMITALGMHIGELLGGTLV 252 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 33113388899999999999999999999862887073011026465776886324111025677600138878407114
Q ss_pred HHH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999----76999999999998323577999999999999-999999999999999862137
Q gi|254781113|r 166 AST----ITIPEIFQTAQRIVSTTYQPLIIYCELAFVYL-ILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 166 ~s~----ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l-~i~~~~~~l~~~lerr~~~~~ 221 (226)
.-. =|+|= +....+-+++|-.++.|.......+ +..+++|.+..+++-|.+||+
T Consensus 253 iE~iFswPG~GR--y~i~AifNRDyPviQcy~Ll~~~lfv~cNLivD~~~a~lDPR~rR~E 311 (315)
T TIGR02789 253 IENIFSWPGVGR--YAISAIFNRDYPVIQCYTLLMALLFVLCNLIVDLLQALLDPRIRRKE 311 (315)
T ss_pred EEEECCCCCHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 541012666104--57433562376389999999999999999999999985187611104
No 74
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.3e-11 Score=82.50 Aligned_cols=208 Identities=13% Similarity=0.178 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHH-HHHCCC----
Q ss_conf 99999999999999999999999999999997067637999999999998555-3222-2221112233-321014----
Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGT-PLLV-QLFVIFYGLP-HIGIVF---- 88 (226)
Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~i-P~lv-~l~~~~f~~~-~~g~~~---- 88 (226)
..+.+++.|+.++.++..+-.++|+..|+.-.++..|- |.+....+++.-++ |.+. +.+...||.. .+|-..
T Consensus 62 dalsAi~LTllva~I~VPlN~vFGv~aAW~iakf~F~G-k~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG~wl~~~~ 140 (287)
T COG4208 62 DALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPG-KALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLGGWLEAHD 140 (287)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 68999999999998630078999999999999705884-44665654377742279987899998705663207888579
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHH
Q ss_conf ----4333333100110000015789998875283368998651746356577875223576445677--87-8898752
Q gi|254781113|r 89 ----DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPL--SS-EFISILK 161 (226)
Q Consensus 89 ----~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l--~~-~~i~lik 161 (226)
-++-.-+++-.+.++||+++-+--=+|+-.++|+|||.++|+|.||+||||++|..-=..+=+. .| ..+.-+.
T Consensus 141 iqIiFa~PGiVLaT~FVT~PFVaREliPlmq~qG~~eEeAA~~LGAsgWQtFwrVTLPnIkWgLlYGvvL~nARamGEFG 220 (287)
T COG4208 141 IQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIRWGLLYGVVLTNARAMGEFG 220 (287)
T ss_pred CEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCHHHHCCCC
T ss_conf 46999547413545222161289898799988398488999872623011025675473079998889871605541677
Q ss_pred HHHHHH--HHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 679999--976999-99999999832357799999999999999999999999999986213747889
Q gi|254781113|r 162 STSVAS--TITIPE-IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK 226 (226)
Q Consensus 162 ~tsl~s--~ig~~e-l~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~~~~ 226 (226)
+.|+.| +-|-.. +-... ++-...|+.-..|..+.+. -.+..+...+...+|+|..++.+..++
T Consensus 221 AVsVVSG~IrG~TnTlPL~V-Eily~eY~~~~AFa~AslL-allAlvTL~lK~~le~r~~~~~~~~~~ 286 (287)
T COG4208 221 AVSVVSGHIRGETNTLPLHV-EILYNEYNTVGAFAAASLL-ALLALVTLVLKTILEWRQGKRLAAVEE 286 (287)
T ss_pred CEEEEECCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 36998445247766523016-9887644688999999999-999999999999999876666421137
No 75
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.27 E-value=5.6e-09 Score=68.04 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHH---HHHHHHHHHHHHHH------------
Q ss_conf 99999999999999999999999999999999999970676-379999999---99998555322222------------
Q gi|254781113|r 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSD-TIISLIMHF---YVWIFRGTPLLVQL------------ 74 (226)
Q Consensus 11 ~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~-~~~~~~~~~---~i~~~r~iP~lv~l------------ 74 (226)
+-+...+.++.++++++++.+.++|..+|+..+........ .+++...-. ..+-+.|+|+---.
T Consensus 48 ~lf~p~~l~a~~~Sikis~aSsl~G~lig~~~a~alv~~~~ps~ir~~lltfsgvaSnFaGVPLAfAFiatLG~~G~vtv 127 (282)
T COG4132 48 DLFQPFILQAYWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLGRNGLVTV 127 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 98628999999999867999988999999999999997794788887784231455413687199999999654416999
Q ss_pred HHH-HHHHH--HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 211-12233--321014433333310011000001578999887528336899865174635657787522357644567
Q gi|254781113|r 75 FVI-FYGLP--HIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVP 151 (226)
Q Consensus 75 ~~~-~f~~~--~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~ 151 (226)
++- .+|+. ..|...-+++...+.-..+..|-+..+..-++++..++-.||+..+|++.||-.|+|.+| ..+|+
T Consensus 128 ~Lk~~~g~~~~~~~fnl~s~~GltitY~yFQIPL~vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~P----iL~Ps 203 (282)
T COG4132 128 FLKTLGGFNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALP----ILWPS 203 (282)
T ss_pred HHHHHCCCCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHH
T ss_conf 99984274300465048886252577578865689998976666678999999998677428999999899----85199
Q ss_pred HHHHHHHHHHHH----HHHHHHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787889875267----9999976-----9999999999983235779999999999999999999999999998621
Q gi|254781113|r 152 LSSEFISILKST----SVASTIT-----IPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQ 219 (226)
Q Consensus 152 l~~~~i~lik~t----sl~s~ig-----~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~ 219 (226)
+...++.++... +-+..++ +....-.+|.-++-..+| ..-.+.+....+++.+.+.+..|+.+|-.|
T Consensus 204 llGt~vlLfANAfGA~ATayaLtgsslNivPI~l~AqIrGDVl~np-~lg~ALa~~mi~it~v~n~~~~wlr~rs~r 279 (282)
T COG4132 204 LLGTFVLLFANAFGAYATAYALTGSSLNIVPILLYAQIRGDVLHNP-NLGYALAFGMIVITGVANLLYIWLRKRSER 279 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9888999999877577878775068754168999999821456895-189999999999999999999999987777
No 76
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.12 E-value=7.5e-10 Score=72.81 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_conf 999999999999999999999999999970676379999999999985553222222111--------------------
Q gi|254781113|r 19 AAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIF-------------------- 78 (226)
Q Consensus 19 ~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~-------------------- 78 (226)
+=..-|++.++-+++.+.++++.-|+.-.++-.+-.|..+++.||.+.+.|..+.-|+..
T Consensus 430 Pi~FGTLKAA~yAMlfA~PlAvagAiYTAYFM~p~mRRvVKPtIElMeAlPTViiGf~AGlwlAP~vE~hLpgvl~L~lL 509 (733)
T COG4590 430 PIAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMTPSMRRVVKPTIELMEALPTVIIGFLAGLWLAPFVESHLPGVLALMLL 509 (733)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00044689999999998589999899999953775641100089997533188999988776667776433699999998
Q ss_pred ---------HH---H------------------------HHHHCCCCC------------------------C--CCCCC
Q ss_conf ---------22---3------------------------332101443------------------------3--33331
Q gi|254781113|r 79 ---------YG---L------------------------PHIGIVFDS------------------------F--VAIII 96 (226)
Q Consensus 79 ---------f~---~------------------------~~~g~~~~~------------------------~--~~~ii 96 (226)
|+ + +.+...+++ - ...-+
T Consensus 510 lpl~ill~G~~wsRLp~~~~~~lPaGW~a~iLiPV~l~~galaLwlsp~Le~~~fggdlr~wL~~d~~~YDQRNALvVG~ 589 (733)
T COG4590 510 LPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVLLGIGALALWLSPELENALFGGDLRVWLAQDGIGYDQRNALVVGF 589 (733)
T ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 67899999777764508773569876234688899999879998717476666726637768652477723244423342
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q ss_conf 001100000157899988752833689986517463565778752235764456778788987526----------7999
Q gi|254781113|r 97 SLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKS----------TSVA 166 (226)
Q Consensus 97 ~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~----------tsl~ 166 (226)
++++.-.|.+-.+-..++-|||++.-+.+.++|+|+||+..||++|.|-|.|..+++..+--...+ |.+.
T Consensus 590 AMGFAvIP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiMiG~GRAVGETMIVLMATGNtP~~ 669 (733)
T COG4590 590 AMGFAVIPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMATGNTPLL 669 (733)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 00022220345342244324785446673013687145401457504684188999975111106258999723898521
Q ss_pred HHHHHHHH-HHHHH--------HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99769999-99999--------99832357799999999999999999999999999986213747
Q gi|254781113|r 167 STITIPEI-FQTAQ--------RIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 167 s~ig~~el-~~~a~--------~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226)
..-=...+ +..++ .+++..|+. ....+++.+..+...+-+..++..|++++-++
T Consensus 670 ~~nIFeGmRtlaAniAvEmPEseVgs~HyRv---LFL~ALvLltFTF~vNtLAE~vRqRLRekY~s 732 (733)
T COG4590 670 DWNIFEGMRTLAANIAVEMPESEVGSAHYRV---LFLAALVLLTFTFAVNTLAEWVRQRLREKYRS 732 (733)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHCCCCEEEH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 2228777888765521217654406633426---89999999999999989999999999988623
No 77
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=99.12 E-value=2.5e-10 Score=75.48 Aligned_cols=124 Identities=17% Similarity=0.220 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999999999999999997067637999999999998555322-----22221112233321014433
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL-----VQLFVIFYGLPHIGIVFDSF 91 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~l-----v~l~~~~f~~~~~g~~~~~~ 91 (226)
+.-+..-|....+.+..++++.|..+|.... +++....+.-..+|++.++|.+ ++.++++-.-+.+|...
T Consensus 7 i~la~LaT~gRm~~ai~iSi~~~~~lAy~A~--Ksk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv~lfpG~lGvEl--- 81 (523)
T COG4986 7 IPLALLATAGRMLLAILISILTGWFLAYAAI--KSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLFPGPLGVEL--- 81 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCCCHHHHH---
T ss_conf 9999999999999999999999999999998--52056761304998874085120105355444343475003899---
Q ss_pred CCCCCCH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3333100---110000015789998875283368998651746356577875223576445
Q gi|254781113|r 92 VAIIISL---TLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSA 149 (226)
Q Consensus 92 ~~~ii~l---~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~il 149 (226)
++.+.+ ..++ +.-=...+++.||++..|.|+..++|.|+.++|+-+|-++|.+.
T Consensus 82 -Aa~FlvFTs~aWN---i~fs~YQsFkTvP~dl~Eva~~yrls~~~r~~rlyIPfa~Pgi~ 138 (523)
T COG4986 82 -AADFLVFTSVAWN---IWFSEYQSFKTVPSDLLEVARNYRLSFLLRMARLYIPFAMPGIA 138 (523)
T ss_pred -HHHHHHHHHHHHH---HHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHH
T ss_conf -9999999999999---99999998723878999999872658999878705431125679
No 78
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=99.02 E-value=4.8e-08 Score=62.90 Aligned_cols=199 Identities=12% Similarity=0.136 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--C
Q ss_conf 999999999999999999999999999999997067637999999999998555322222211122333210---14--4
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI---VF--D 89 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~---~~--~ 89 (226)
+.+|+..++|++++..+..++.+.|+++|.... +.+...++.....++-..+.|..+.-.+.|..+..-|. .. -
T Consensus 19 ~~l~~iv~~tl~vSl~~i~laalv~~pLa~vl~-~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlSr~GPlG~f~LLf 97 (227)
T COG4662 19 PELIGIVATTLYVSLISIFLAALVGVPLAFVLA-LREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLSRSGPLGWFNLLF 97 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999999999999999999975328999999-8347547999999988631639999999999996469986303676
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333310011000001578999887528336899865174635657787522357644567787889875267999997
Q gi|254781113|r 90 SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI 169 (226)
Q Consensus 90 ~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~i 169 (226)
..-+.++...+-.-|-+.-.+.+++|++|+...|-|+++|+|+.|.+-.++--...+.+ ......+--.+.+.-.+-.+
T Consensus 98 T~~amILGq~iL~lPlvia~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~Earf~l~-aav~agfgR~V~EvG~Ammv 176 (227)
T COG4662 98 TQDAMILGQAILILPLVIAFVLTALESVDPRLKELARSLGASPLKLASTVFREARFGLM-AAVAAGFGRAVAEVGVAMMV 176 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_conf 21069988799999999999999998459789999998099589999999999986799-99999861799986277603
Q ss_pred HHHHHHHHHHH----HH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999999----98-3235779999999999999999999999999998
Q gi|254781113|r 170 TIPEIFQTAQR----IV-STTYQPLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 170 g~~el~~~a~~----i~-~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
| ++..+..+. +. ..+-..++.-.+.+++.+.++..++.+..++++|
T Consensus 177 G-GnI~g~TR~itTAIslET~kG~fa~gIaLgiVLlaial~ln~vl~~l~~~ 227 (227)
T COG4662 177 G-GNIRGRTRVITTAISLETNKGNFAQGIALGIVLLAIALALNFVLTALQGK 227 (227)
T ss_pred C-CCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5-75111223300244356034529885899999999999999999984469
No 79
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=98.82 E-value=2.9e-07 Score=58.58 Aligned_cols=205 Identities=16% Similarity=0.276 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----H-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73089999999999999999999999999999999999999999970676----3-799999999999855532222221
Q gi|254781113|r 2 KYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSD----T-IISLIMHFYVWIFRGTPLLVQLFV 76 (226)
Q Consensus 2 ~~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~----~-~~~~~~~~~i~~~r~iP~lv~l~~ 76 (226)
+-||-....|+| ++-=..-+..=++++++++++.|+++|-.. .+++ + .+|..+-.++ .|.+|.+|=
T Consensus 33 ~~~W~A~~~D~Y---L~H~~~FSF~QAlLS~~LS~~~~~lLARAL-y~~~F~G~~~LL~L~~lTl~-----LP~LV~~FG 103 (519)
T TIGR01253 33 ELDWVAVFTDDY---LQHLVLFSFGQALLSALLSVIFALLLARAL-YRKRFLGKKALLKLMALTLV-----LPVLVVVFG 103 (519)
T ss_pred CCCEEEEEECCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHH-----HHHHHHHHH
T ss_conf 656067762407---899999998999999999999999999997-40688426899999999999-----999999997
Q ss_pred HH--HHH--------HHHHC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 11--223--------33210----14433333310011000001578999887528336899865174635657787522
Q gi|254781113|r 77 IF--YGL--------PHIGI----VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILP 142 (226)
Q Consensus 77 ~~--f~~--------~~~g~----~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilP 142 (226)
+- ||- ...|. ...+.-.-.+++.+++-|..++.+-.++|+||.+|++-|.-+|+..||=+|-|.+|
T Consensus 104 ~~~~YG~~GWLA~L~~~lGl~W~~~~YGL~GIL~AH~FFN~PlA~~LlLQ~L~~IP~~QRQLAAQL~l~~W~F~~lVEWP 183 (519)
T TIGR01253 104 LLSVYGRSGWLATLANLLGLEWTFSIYGLSGILLAHLFFNLPLAARLLLQALESIPYEQRQLAAQLNLRSWQFVKLVEWP 183 (519)
T ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECH
T ss_conf 77640575379999987187503433415799999999615699999999874178157799997167753056663051
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 357644567787889875267999997699---999---99999983235779999999999999999999999999998
Q gi|254781113|r 143 QTITTSAVPLSSEFISILKSTSVASTITIP---EIF---QTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 143 qal~~ilp~l~~~~i~lik~tsl~s~ig~~---el~---~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
---+.+.|... .|.|+==+|.+-++++| .-+ ...++.-+..||+-.+ ...+..=++.|..+..++.|+.+-
T Consensus 184 ~lR~Q~~P~~~--LIFMLCF~SF~~VL~LGGGPQ~TT~E~AIYQA~~y~yD~~~A-AllAlLQ~V~CL~L~~L~~RlS~~ 260 (519)
T TIGR01253 184 VLRRQILPVAA--LIFMLCFASFAVVLSLGGGPQATTLELAIYQALLYDYDLAKA-ALLALLQFVFCLILVLLSSRLSKA 260 (519)
T ss_pred HHHHHCCHHHH--HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23321125899--999999888999873589840689999999998731684689-999999999999999998878764
Q ss_pred HH
Q ss_conf 62
Q gi|254781113|r 217 VT 218 (226)
Q Consensus 217 ~~ 218 (226)
.+
T Consensus 261 ~~ 262 (519)
T TIGR01253 261 IA 262 (519)
T ss_pred CC
T ss_conf 05
No 80
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=98.72 E-value=1.2e-07 Score=60.77 Aligned_cols=146 Identities=17% Similarity=0.313 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHC-
Q ss_conf 999999999999999999999999999999997067637999999999998555322--2222111223-----33210-
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL--VQLFVIFYGL-----PHIGI- 86 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~l--v~l~~~~f~~-----~~~g~- 86 (226)
+.+...+.-|+..++++..++..+|+++|......+.+|.++.....--.=-++|.. ..+...++.+ |..|.
T Consensus 68 ~~l~~vfPaT~ELC~~af~lal~~GiPlG~iagv~~~kw~d~~i~~is~~G~SiPvFWlAl~ll~f~slh~~~~pv~Gry 147 (321)
T COG4168 68 EQLLEVFPATMELCFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGFSIPVFWLALLLLLFFSLHLGWLPVSGRY 147 (321)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCE
T ss_conf 99998666189999999999999846479887754230788999999985467459999999999999751411034310
Q ss_pred -----------------CCC--C------------CCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHH
Q ss_conf -----------------144--3------------33333100110000015789998875-283368998651746356
Q gi|254781113|r 87 -----------------VFD--S------------FVAIIISLTLNFSAYISEIIRSSIIS-IPKGQWDASYAIGLTRKQ 134 (226)
Q Consensus 87 -----------------~~~--~------------~~~~ii~l~l~~~~~~~~i~r~~l~~-v~~~~~EAA~alG~s~~q 134 (226)
.++ | ...-.+++++--+.-+.+++|..-+. .++.+..||..-|.|++|
T Consensus 148 dLLY~ikpiTGfalIDawls~spyRt~~iqs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~ 227 (321)
T COG4168 148 DLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFT 227 (321)
T ss_pred EEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 14565045466277889863770578999999999888899999734799999999989999742489999965603558
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57787522357644567787889875
Q gi|254781113|r 135 TIRHIILPQTITTSAVPLSSEFISIL 160 (226)
Q Consensus 135 ~~~~iilPqal~~ilp~l~~~~i~li 160 (226)
+.||+++-.++|..+|-..-+|..++
T Consensus 228 Ilr~hVlrNalPplIPq~g~qfs~mL 253 (321)
T COG4168 228 ILRRHVLRNALPPLIPQLGLQFSTML 253 (321)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999985047854441367999999
No 81
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=98.64 E-value=8.1e-07 Score=56.16 Aligned_cols=143 Identities=11% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCC
Q ss_conf 9999999999----99999999999999999997067637999999999998555322222211-122333210144333
Q gi|254781113|r 18 YAAIVVTLPI----ACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVI-FYGLPHIGIVFDSFV 92 (226)
Q Consensus 18 ~~~l~~Tl~~----~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~-~f~~~~~g~~~~~~~ 92 (226)
..|..-|+.- ++.+++.|.++|++.|+.+. -+.+.++.+.+.+ -++|.+....++ .|.- ++..
T Consensus 92 i~Gt~~t~G~allvt~~a~l~g~~lGi~AG~t~g-l~s~~lnHilDt~----lSiPsLLlAiivvaf~g-------psl~ 159 (296)
T COG4171 92 ISGTAPTVGGALLVTLAATICGGVLGIFAGATHG-LRSAVLNHILDTL----LSIPSLLLAIIVVAFAG-------PSLS 159 (296)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC-------CHHH
T ss_conf 7067523413999999999999999999977777-8999999999999----73589999999999608-------3288
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3331001100000157899988-752833689986517463565778752235764456778788987526799999769
Q gi|254781113|r 93 AIIISLTLNFSAYISEIIRSSI-ISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITI 171 (226)
Q Consensus 93 ~~ii~l~l~~~~~~~~i~r~~l-~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~ 171 (226)
-++++..+---||+.+-+..+. +.++|+++-|+|-.|+|.....++.++|...+..+.-++-.+...+.|-+-.+++++
T Consensus 160 namfA~~LAllPrfirsiY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~~v~EitrAlsiAiLDI~ALgFl~L 239 (296)
T COG4171 160 NAMFAVWLALLPRFIRSIYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAILVTEITRALSIAILDIAALGFLDL 239 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999999999999998877877765267661889999972512799999999999999998888613312
Q ss_pred H
Q ss_conf 9
Q gi|254781113|r 172 P 172 (226)
Q Consensus 172 ~ 172 (226)
+
T Consensus 240 G 240 (296)
T COG4171 240 G 240 (296)
T ss_pred C
T ss_conf 5
No 82
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=3.2e-06 Score=52.92 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999999999999999997067637999999999998555322222211122333210144
Q gi|254781113|r 10 IDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFD 89 (226)
Q Consensus 10 ~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~ 89 (226)
.+.-|..++.++. ++....+-..++.+++++++..- ..++....+..+.+++..+.|.-+..-+.+-..-... ..+
T Consensus 309 ~~~~~~v~~~~l~-~~lRV~vilals~~i~i~lGy~i--~~~p~~e~i~~P~~Q~LaafPa~~~FPl~~aa~~~~i-~~~ 384 (523)
T COG4986 309 VSETPAVLLYLLY-DYLRVVVILALSFLISIFLGYSI--ALRPRVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFI-LTP 384 (523)
T ss_pred HHHCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHE--EECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCC
T ss_conf 7125289998788-99999999999999999865740--3151165541279999871892378889999999986-074
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333310011000-00157899988752833689986517463565778752235764456778788
Q gi|254781113|r 90 SFVAIIISLTLNFS-AYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEF 156 (226)
Q Consensus 90 ~~~~~ii~l~l~~~-~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~ 156 (226)
.++ +..+.+.++ =|+---+-.|.+++|.++.|+||.++++.|..+||+++|...|..+.++.+..
T Consensus 385 ei~--l~pL~~~gT~~Yi~~n~iaG~ka~P~e~~e~akny~l~~w~k~r~iilP~tFPYlitG~~tt~ 450 (523)
T COG4986 385 EIW--LSPLGFIGTFYYIFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTI 450 (523)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 577--746777667899999999876527789999999708355998888753642299987477530
No 83
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry comprises of the nitrate transport permease in bacteria, the gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016021 integral to membrane.
Probab=98.53 E-value=8.1e-06 Score=50.68 Aligned_cols=128 Identities=15% Similarity=0.316 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCC
Q ss_conf 999999999999999999999999999999706763799999999999855532222221112233321--014433333
Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIG--IVFDSFVAI 94 (226)
Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g--~~~~~~~~~ 94 (226)
+.-....++.....+...+.+.|+.+|..- ..++......++..++.|.+|.+.|+-.....+.+.. ..+--|..+
T Consensus 15 l~~q~~~sl~rva~G~~~aa~~Gi~~G~~~--G~~~~~~~~ldP~~q~lr~~~PlaW~Pi~l~~~~~~~~~aifvifita 92 (203)
T TIGR01183 15 LFLQILASLTRVAVGYLLAAIVGIAVGILI--GLSKLLNKALDPIFQVLRTVPPLAWLPIALAAFQDAQPAAIFVIFITA 92 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEHHHHH
T ss_conf 799999999999999999999999999997--468999874208999997515345788999998416863131124877
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310011000001578999887528336899865174635657787522357644567787
Q gi|254781113|r 95 IISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSS 154 (226)
Q Consensus 95 ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~ 154 (226)
++...+++ ..|.+.+|+++.+.+|.+-+|+.+-+.++++|.+.|.+..++..
T Consensus 93 ~WPi~int--------~~G~~~~P~dy~nv~rvl~ls~~~y~~~~~~P~~~Py~f~Gl~i 144 (203)
T TIGR01183 93 IWPIIINT--------AVGVQQIPQDYNNVARVLKLSKSDYLLKVLLPAAVPYIFTGLRI 144 (203)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999876--------66676311778999999998788888877754445689865899
No 84
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.47 E-value=7.7e-06 Score=50.78 Aligned_cols=138 Identities=14% Similarity=0.249 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
Q ss_conf 9999999999999999999999999999999999997067637999999999998555322222211122333210---1
Q gi|254781113|r 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI---V 87 (226)
Q Consensus 11 ~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~---~ 87 (226)
+.+|+.+ .....+...+.-+..++.++++..-- +... ..|+.. |-.+ ..|.++.-.-+-||...... .
T Consensus 341 ~~~P~~l-~n~~T~vllAlsasslALll~iL~le---~~~~-~qR~~~--~~~l--~LP~LlP~lslvfG~qvL~L~~~l 411 (551)
T COG4135 341 NSLPEAL-INSLTMVLLALSASSLALLLLILWLE---WGGI-PQRRQA--YLWL--WLPILLPALSLVFGQQVLALWLGL 411 (551)
T ss_pred HHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHH---HCCC-CHHCCH--HHHH--HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7559998-74565999997204599999999999---5798-320110--6888--888876677899889999999626
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4433333310011000001578999887528336899865174635657787522357644567787889
Q gi|254781113|r 88 FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFI 157 (226)
Q Consensus 88 ~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i 157 (226)
.++|.+.+.++.++..|++..+..+.-|++|+..+.-|+++|-|++|+|++|-+|..+|.++-+....+-
T Consensus 412 ~~~w~~Vvw~H~~fv~P~v~l~Ls~pWq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~AVGfa 481 (551)
T COG4135 412 DGSWTAVVWGHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAVGFS 481 (551)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 8743999999999999999998474575527089999987083066788875045767999999998767
No 85
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=98.47 E-value=1.5e-05 Score=49.19 Aligned_cols=190 Identities=15% Similarity=0.201 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHCCCCC
Q ss_conf 999999999999999999999999999999997067637999999999---998555322222211122333-2101443
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYV---WIFRGTPLLVQLFVIFYGLPH-IGIVFDS 90 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i---~~~r~iP~lv~l~~~~f~~~~-~g~~~~~ 90 (226)
..+|++++.++.++..+.+++.++++.+=+..-+-+-+-..++....+ -++-++|.+|+..=++..+.+ .+...+.
T Consensus 319 ~~LW~AL~~SL~IA~~~~~L~~~l~~~LL~~SR~L~~~~~~~~~Q~~~~~GM~ILA~P~~VLA~GlFLLL~~~~~~~~~~ 398 (519)
T TIGR01253 319 SVLWRALGYSLRIALLAALLALVLAIALLLLSRRLRALQKQKISQVLINAGMLILAIPILVLATGLFLLLNDRIFLNIDL 398 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 47899998899999999999999999999875889999878898899984289999779999998999861346777542
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333100110000015789998875283368998651746356577875223576445677878898752679999976
Q gi|254781113|r 91 FVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170 (226)
Q Consensus 91 ~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig 170 (226)
+..+++.-.+...||.-++..+=++++-+.+.+-..|+|-..||.++-|.+-.--+..--++.-..+..+.|-+..+.=|
T Consensus 399 ~~IV~F~NAL~A~Py~L~~L~~P~~~~~~~Y~~LC~SLGI~GW~Rl~~~E~~~L~~PL~~AlAl~~~LS~GDF~~~ALFG 478 (519)
T TIGR01253 399 DIIVVFTNALSAIPYVLKVLEAPFRDITARYENLCNSLGIVGWSRLKLVELKALKAPLAYALALALVLSLGDFTVVALFG 478 (519)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 01013454777635999984051578899998755321733004778887999877999999999998521156200103
Q ss_pred HHHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999----99999983235779999999999999999999
Q gi|254781113|r 171 IPEIF----QTAQRIVSTTYQPLIIYCELAFVYLILTSFCY 207 (226)
Q Consensus 171 ~~el~----~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~ 207 (226)
=.|.. +.=|++++ |+.-+....+.+. +.+|..+.
T Consensus 479 N~~F~~LP~~LYQQ~G~--YR~QD~AVTA~IL-LLLC~~LF 516 (519)
T TIGR01253 479 NDDFRSLPFLLYQQLGS--YRSQDAAVTALIL-LLLCFLLF 516 (519)
T ss_pred CCCCCHHHHHHHHHHCC--CCCHHHHHHHHHH-HHHHHHHH
T ss_conf 75321137899987235--3361389999999-99999998
No 86
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.31 E-value=9.2e-08 Score=61.34 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-------HHHH
Q ss_conf 99999999999999999999999999999999706763799999999999855532222--22111223-------3321
Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ--LFVIFYGL-------PHIG 85 (226)
Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~--l~~~~f~~-------~~~g 85 (226)
+++.+.+.+++.+.+.++++.-.+.+|+++.+....+...+.-....+-+-.++|..+. +.++.|.- |.-|
T Consensus 126 dLI~eklPVSiSlGlw~tli~YliSIPLGI~KAv~~gs~fDvwsS~viiigyAiP~FlfailLiVlFaGGsy~dwFPLRG 205 (364)
T COG4174 126 DLIKEKLPVSISLGLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAGGSYFDWFPLRG 205 (364)
T ss_pred HHHHHHCCCEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 99997478278768999999999743332888874798420221136887324279999999997415876101200146
Q ss_pred CCCC-------------CC---CCCCCCHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0144-------------33---3333100110000015789998-87528336899865174635657787522357644
Q gi|254781113|r 86 IVFD-------------SF---VAIIISLTLNFSAYISEIIRSS-IISIPKGQWDASYAIGLTRKQTIRHIILPQTITTS 148 (226)
Q Consensus 86 ~~~~-------------~~---~~~ii~l~l~~~~~~~~i~r~~-l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~i 148 (226)
..-+ -+ +.-+.++.+-+.|-.....+++ ++.+.|.++-.||+-|.|+.+++++++.-.|+-.+
T Consensus 206 LvSdnf~~L~~~~ki~DYlWH~tLPv~a~v~g~FAt~TlLtKNSFldEi~KqYVvTARAKGlserrvly~HVFRNAMLlv 285 (364)
T COG4174 206 LVSDNFDQLSWYGKITDYLWHITLPVLALVLGGFATLTLLTKNSFLDEIRKQYVVTARAKGLSERRVLYKHVFRNAMLLV 285 (364)
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 34588343472788899999988889999986677788875305899976452663231588554526998863427887
Q ss_pred HHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56778788987526799-999----7699999999999832357-79999999999999999999999999998621374
Q gi|254781113|r 149 AVPLSSEFISILKSTSV-AST----ITIPEIFQTAQRIVSTTYQ-PLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 149 lp~l~~~~i~lik~tsl-~s~----ig~~el~~~a~~i~~~~~~-~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
+.+.-..++.++-..|+ .-. =|++-+.+.+ ..++.|. .+.......++-++..+..+.+-.+++.|.+-.+|
T Consensus 286 iaGfP~afis~FFTgSLLIE~iFSLdGlGllgyea--~v~RDYPvvfgtLyIftL~GL~~~lisDl~yt~vDPRIdFe~r 363 (364)
T COG4174 286 IAGFPAAFISMFFTGSLLIEVIFSLDGLGLLGYEA--VVSRDYPVVFGTLYIFTLIGLLVSLISDLTYTLVDPRIDFEAR 363 (364)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HHCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC
T ss_conf 61780999999971247999987236621110687--8647886421668999999999999754417864575564557
No 87
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014).
Probab=97.23 E-value=0.012 Score=33.30 Aligned_cols=165 Identities=13% Similarity=0.194 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH--------HHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999--------9999--------9706763799999-999999855532222221
Q gi|254781113|r 14 PQLLYAAIVVTLPIACISFVISLIIGFF--------IAVI--------RIFFSDTIISLIM-HFYVWIFRGTPLLVQLFV 76 (226)
Q Consensus 14 ~~~l~~~l~~Tl~~~~~~~~i~~~lg~~--------la~~--------~~~~~~~~~~~~~-~~~i~~~r~iP~lv~l~~ 76 (226)
++.++.+...+++...++.++..++..- +.++ +.+.+.+...... ...+.+.-+ -.+....+
T Consensus 35 k~l~ia~~R~~vQL~lvG~vL~~iF~~~~~~~~ll~~~~M~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~~-~~i~l~~l 113 (250)
T pfam03649 35 KKILWVSGRAIIQLIIVGYVLLYIFSFDNMVGALLMIGVMITLAAYLAMRRINLKNKTKLFICLFITFGAT-TIISLAVL 113 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 99999999999999999999999986997999999999999999999983457675109999999999999-99999999
Q ss_pred HHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11223332-10144333333100110000015789998875283368998651746356577875223576445677878
Q gi|254781113|r 77 IFYGLPHI-GIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSE 155 (226)
Q Consensus 77 ~~f~~~~~-g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~ 155 (226)
+..+.+.. ....-|...-+++-+++...-..|-+++.+++ .++.+|+.-++|+|++|..+.. ..++++..+-|..|+
T Consensus 114 ~~~~~~~~~p~y~IPi~GMilGNsMna~sLal~rl~~~l~~-~~~~iE~~LaLGAt~~~A~~~~-~r~Air~aliP~in~ 191 (250)
T pfam03649 114 IIPKVVKFEPIYVIPLMGMIIGNTMNTIHLALDKLIDMVKS-ERDIIWGYLALGATPIQALAPF-IRNAIRAALIPTVNR 191 (250)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 97588887841788899999962299999999999999998-7999999998799989999999-999999985626999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 898752679999976999999999998323577999
Q gi|254781113|r 156 FISILKSTSVASTITIPEIFQTAQRIVSTTYQPLII 191 (226)
Q Consensus 156 ~i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~ 191 (226)
.- ..+.+..+. +..||..++. +|.++
T Consensus 192 m~-------~vGlVsLPG-mMTGqILaG~--~Pl~A 217 (250)
T pfam03649 192 TK-------SVGLVSLPG-MMVGMLLAGA--DPIYA 217 (250)
T ss_pred HH-------HCCHHCCCH-HHHHHHHCCC--CHHHH
T ss_conf 87-------801212646-8999896499--88999
No 88
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=95.77 E-value=0.12 Score=27.82 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHCCCHHHHHHH---HH---HHHHHHHH
Q ss_conf 9730899999999999999999999999999999999999999------999706763799999---99---99998555
Q gi|254781113|r 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIA------VIRIFFSDTIISLIM---HF---YVWIFRGT 68 (226)
Q Consensus 1 m~~~w~~~~~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la------~~~~~~~~~~~~~~~---~~---~i~~~r~i 68 (226)
|+=|-+.++.+ -+|+.+..|+..++++.++|+++|+.++ ..+.+.-++..+... +. .+.++-..
T Consensus 1 ~~~~~~~lll~----g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~ 76 (217)
T PRK10782 1 MSEAMMWLLVR----GVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMI 76 (217)
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97789999999----99999999999999999999999999997320224434689999999999995068999999999
Q ss_pred HHHHHHHHHHHHHHH--HH--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 322222211122333--21--01443333331001100000157899988752833689986517463565778752235
Q gi|254781113|r 69 PLLVQLFVIFYGLPH--IG--IVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQT 144 (226)
Q Consensus 69 P~lv~l~~~~f~~~~--~g--~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqa 144 (226)
|..-...-...+... +. ....++.+-+.--++.. +-+-.+++-++.--+..+.-+--=. -|. .+.++|+.
T Consensus 77 ~~~~~~~g~~~g~~aaiiaL~i~~~~~iar~~~~~i~~---V~~g~~EAa~alG~s~~q~i~~viL--PqA-lp~ii~~~ 150 (217)
T PRK10782 77 PFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLE---IPTGLIEASRAMGATPMQIVRKVLL--PEA-LPGLVNAA 150 (217)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHCCCCHHHHHHHHHH--HHH-HHHHHHHH
T ss_conf 99999844662168999999999989999999999983---9987999999839898899485107--921-99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 764456778788987526799999769999999999983235779999999999999999999999999998
Q gi|254781113|r 145 ITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 145 l~~ilp~l~~~~i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
.-.....+....+ -+..+.-|++|+..+-.....+............++.+++....+.+.|++|||
T Consensus 151 ~~~~i~~i~~tsl-----~g~IG~ggLG~~a~~~~~~~~~~~~~~~v~~l~~ilv~~i~~~~~~l~k~~~~r 217 (217)
T PRK10782 151 TITLITLVGYSAM-----GGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217 (217)
T ss_pred HHHHHHHHHHHHH-----HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999-----999810478999999999851510999999999999999999999999986379
No 89
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.25 E-value=0.18 Score=26.76 Aligned_cols=129 Identities=15% Similarity=0.186 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Q ss_conf 9999999999999999999999999---9970676379999999999985553222222--------------1112233
Q gi|254781113|r 20 AIVVTLPIACISFVISLIIGFFIAV---IRIFFSDTIISLIMHFYVWIFRGTPLLVQLF--------------VIFYGLP 82 (226)
Q Consensus 20 ~l~~Tl~~~~~~~~i~~~lg~~la~---~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~--------------~~~f~~~ 82 (226)
++...+..+..++.++++.+..++. .+.....+|.| +... .+..-++|-..-.+ +.|..++
T Consensus 53 ~~~~alL~~l~stl~~tv~Alli~~~~i~~fw~~P~w~R-i~~~-ls~LLAiPHvAfA~~~a~LfA~~G~L~RLly~~f~ 130 (551)
T COG4135 53 HLPQALLATLVSTLIATVGALLIALLVIVAFWPGPKWQR-ICHR-LSWLLAIPHVAFATSAALLFADGGFLLRLLYDYFP 130 (551)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHH-HHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 228999999999999999999999999999648971999-9864-00887454899999999994584078988414777
Q ss_pred HHHC------CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3210------14433333-310011000001578999887528-33689986517463565778752235764456
Q gi|254781113|r 83 HIGI------VFDSFVAI-IISLTLNFSAYISEIIRSSIISIP-KGQWDASYAIGLTRKQTIRHIILPQTITTSAV 150 (226)
Q Consensus 83 ~~g~------~~~~~~~~-ii~l~l~~~~~~~~i~r~~l~~v~-~~~~EAA~alG~s~~q~~~~iilPqal~~ilp 150 (226)
.... ..|++..+ ..++.....||+--+..+.++... ..|..-+.++|.|+||.+..+.+||..|.+--
T Consensus 131 ~ft~p~d~~L~~Dpfaigl~~~La~KEvpFllli~la~L~ql~lt~~~~l~asLGYsr~q~~~w~l~P~~~r~ir~ 206 (551)
T COG4135 131 YFTPPPDWLLPMDPFAIGLGATLAVKEVPFLLLILLAVLSQLALTQQVILLASLGYSRWQCLNWLLLPSVARAIRM 206 (551)
T ss_pred CCCCCHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEHHHHHHHHHH
T ss_conf 7789802135688146677889888413199999999876878999999999736663432021003878999999
No 90
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=94.49 E-value=0.3 Score=25.61 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=26.6
Q ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3089999--999999999999999999999999999999999999
Q gi|254781113|r 3 YEWFNLI--IDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVI 45 (226)
Q Consensus 3 ~~w~~~~--~~~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~ 45 (226)
+||+.-. .+.+.+.+++.+......+.+++++|.+.+..+.-.
T Consensus 49 l~~y~~lf~~~~~~~a~~~Sl~ia~~~t~i~~~lG~~~A~~l~r~ 93 (281)
T PRK10592 49 TRWYGELFRDDAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRF 93 (281)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999977978999999999999999999999999999999980
No 91
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.60 E-value=0.45 Score=24.61 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=41.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3333331001100000157899988752833689986517463565778752235764456778788
Q gi|254781113|r 90 SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEF 156 (226)
Q Consensus 90 ~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~ 156 (226)
|....++.-++++.+-..|-.-+.+.+ ++++.|+.-++|+|++|..+..+= .|.|..+-|-.|+.
T Consensus 126 Pi~GMIlGNtm~~~~L~~~~l~~~i~~-~~~eie~~LsLGaTp~~A~~~~~r-~Air~aliPtins~ 190 (256)
T COG0390 126 PIAGMILGNTMVGVSLAYERLVSEIIS-EKDEIEAKLSLGATPKEASRPYIR-SAIRAALIPTINSM 190 (256)
T ss_pred EHHHHHHCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHCCCHHH
T ss_conf 111256434135545578888999740-389999998528988999799999-98888640550255
No 92
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=82.26 E-value=3.3 Score=19.88 Aligned_cols=29 Identities=28% Similarity=0.317 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999998
Q gi|254781113|r 188 PLIIYCELAFVYLILTSFCYIIQIKIESS 216 (226)
Q Consensus 188 ~~~~~~~~~~i~l~i~~~~~~l~~~lerr 216 (226)
.|.+|.+++++.+++++++..+--|+-||
T Consensus 272 tf~PyGIAAlVLi~L~V~LIiLYIWLYrR 300 (315)
T TIGR01478 272 TFLPYGIAALVLIILTVVLIILYIWLYRR 300 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86135899999999999999998888564
No 93
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=77.65 E-value=3.4 Score=19.81 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 78999887528336899865174635657787
Q gi|254781113|r 108 EIIRSSIISIPKGQWDASYAIGLTRKQTIRHI 139 (226)
Q Consensus 108 ~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~i 139 (226)
+.+..+++.-+-.+-+||+.+|.|+....+|+
T Consensus 8 ~~I~~aL~~~~gn~~~aA~~LGisr~tL~~km 39 (42)
T pfam02954 8 ELIEAALERTGGNKSKAARLLGISRRTLYRKL 39 (42)
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999949979999999796999999999
No 94
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=71.78 E-value=5 Score=18.89 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9998875283368998651746356577875
Q gi|254781113|r 110 IRSSIISIPKGQWDASYAIGLTRKQTIRHII 140 (226)
Q Consensus 110 ~r~~l~~v~~~~~EAA~alG~s~~q~~~~ii 140 (226)
+-+|++.=---|-.|||.||+||.|+=.++-
T Consensus 535 li~AlE~aGWVQAKAARlLg~TPRQVgYalr 565 (574)
T TIGR01817 535 LIAALEKAGWVQAKAARLLGLTPRQVGYALR 565 (574)
T ss_pred HHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999975153799999973786558999998
No 95
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=66.13 E-value=5.9 Score=18.48 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
Q ss_conf 0000015789998875283368998651746356
Q gi|254781113|r 101 NFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQ 134 (226)
Q Consensus 101 ~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q 134 (226)
..-.|=.++++.|++.---.|..||..||.|+-|
T Consensus 308 ~~~~~E~~ll~~AL~~~~fNQr~AAe~LGLtYHQ 341 (349)
T TIGR02974 308 AVQDYEIELLQQALAEAQFNQRKAAELLGLTYHQ 341 (349)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHH
T ss_conf 9999999999999987303478999872573689
No 96
>PTZ00042 stevor; Provisional
Probab=60.26 E-value=12 Score=16.88 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 699999999999832357799999999999999999999999999986
Q gi|254781113|r 170 TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217 (226)
Q Consensus 170 g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~ 217 (226)
+..|+.+.+-...... |.++.+++++.++++.++..+-.|+-||=
T Consensus 246 ~~sD~ag~aa~~A~~~---F~P~GIaalVLlilaVvLIILYIWLyrRR 290 (304)
T PTZ00042 246 GASDLAGTAATAAMAA---FYPCGIAALVLLILAVVLIILYIWLYRRR 290 (304)
T ss_pred ECCCCHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1100000788888864---11629999999999999999999999841
No 97
>PRK11111 hypothetical protein; Provisional
Probab=46.26 E-value=20 Score=15.58 Aligned_cols=22 Identities=5% Similarity=-0.162 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999862137
Q gi|254781113|r 200 LILTSFCYIIQIKIESSVTQHT 221 (226)
Q Consensus 200 l~i~~~~~~l~~~lerr~~~~~ 221 (226)
..++..+...+.+++|++.+..
T Consensus 160 ~~~~~~~l~~a~~i~r~LG~~g 181 (214)
T PRK11111 160 ALCCWGLFRMAPWLVRLLGQTG 181 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCHHH
T ss_conf 9999999998999999988889
No 98
>TIGR02885 spore_sigF RNA polymerase sigma-F factor; InterPro: IPR014236 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . Members of this entry represent RNA polymerase sigma factor F. Within the Firmicutes, Sigma-F is specifically, and universally, a component of the endospore formation program, and is expressed in the forespore to turn on the expression of dozens of genes. It is closely related to sigma-G, which is also expressed in the forespore.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=44.14 E-value=11 Score=16.91 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=7.5
Q ss_pred CCHHHHHHHHCCCHHHH
Q ss_conf 33689986517463565
Q gi|254781113|r 119 KGQWDASYAIGLTRKQT 135 (226)
Q Consensus 119 ~~~~EAA~alG~s~~q~ 135 (226)
+.|.|-|..+|-|..|+
T Consensus 200 kTQ~eVA~~LGISQVQV 216 (231)
T TIGR02885 200 KTQTEVAKMLGISQVQV 216 (231)
T ss_pred CHHHHHHHHCCCCCCHH
T ss_conf 01799997718570012
No 99
>TIGR01402 fliQ flagellar biosynthetic protein FliQ; InterPro: IPR006305 These sequences represent FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participate in bacterial type III protein secretion systems. ; GO: 0016021 integral to membrane, 0019861 flagellum.
Probab=43.12 E-value=22 Score=15.30 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999706763799999999999855532222221
Q gi|254781113|r 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFV 76 (226)
Q Consensus 12 ~~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~ 76 (226)
..-+...+|.+++|.++.--.+.|.++|+..++.++.=+ ...-.-.| +|.++..++
T Consensus 5 ~~l~l~~~a~~~~L~l~aP~L~~aL~VGLvIsIfQA~Tq---IqE~TLsF------~PKii~~ll 60 (88)
T TIGR01402 5 TVLDLGREALWLTLLLSAPVLLVALVVGLVISIFQAATQ---IQEQTLSF------IPKIIAVLL 60 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------HHHHHHHHH
T ss_conf 999999999999999998999999999999999999878---85768866------989999999
No 100
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=42.06 E-value=23 Score=15.21 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999986213747
Q gi|254781113|r 204 SFCYIIQIKIESSVTQHTYS 223 (226)
Q Consensus 204 ~~~~~l~~~lerr~~~~~~~ 223 (226)
..++.+..|++||..||+++
T Consensus 1020 ~l~~~~~~~~~~~~~~~~~~ 1039 (1040)
T PRK10503 1020 LLFDRLALWTKSRFARHEEE 1039 (1040)
T ss_pred HHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999987754445568
No 101
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=39.91 E-value=25 Score=15.02 Aligned_cols=27 Identities=26% Similarity=0.096 Sum_probs=10.6
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 988752833689986517463565778
Q gi|254781113|r 112 SSIISIPKGQWDASYAIGLTRKQTIRH 138 (226)
Q Consensus 112 ~~l~~v~~~~~EAA~alG~s~~q~~~~ 138 (226)
.+++.-.-.+-+||+.+|.|+...++|
T Consensus 293 ~aL~~~~gn~~~aA~~LGIsR~tL~~k 319 (325)
T PRK11608 293 RSLQQAKFNQKRAAELLGLTYHQFRAL 319 (325)
T ss_pred HHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999993998999999988899999999
No 102
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=39.25 E-value=26 Score=14.96 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999706763799999999999855532222221112233
Q gi|254781113|r 22 VVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLP 82 (226)
Q Consensus 22 ~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~ 82 (226)
..++....++.++|.+++.++.......+.+.++.+ +|.++.+++.|||+.
T Consensus 78 ~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~i----------i~vi~t~il~y~G~~ 128 (356)
T COG4956 78 VTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTI----------IPVILTIILAYFGFQ 128 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH----------HHHHHHHHHHHHHHH
T ss_conf 999999878899999999998537762796077768----------999999999997367
No 103
>TIGR01311 glycerol_kin glycerol kinase; InterPro: IPR005999 Glycerol kinase (2.7.1.30 from EC) is a bacterial sugar kinase which catalyzes the Mg-ATP-dependent phosphorylation of glycerol to yield glycerol 3-phosphate. The enzyme from Escherichia coli is an allosteric regulatory enzyme whose activity is inhibited by fructose 1,6-bisphosphate (FBP) and the glucose-specific phosphocarrier of the phosphoenolpyruvate:glycose phosphotransferase system, IIA(Glc), structural studies suggest a nucleophilic in-line transfer mechanism for the ATP-dependent phosphorylation of glycerol by glycerol kinase .; GO: 0004370 glycerol kinase activity, 0006072 glycerol-3-phosphate metabolic process.
Probab=36.92 E-value=17 Score=16.02 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHCC----CHHHHHH
Q ss_conf 331001100000157899988752---8336899865174----6356577
Q gi|254781113|r 94 IIISLTLNFSAYISEIIRSSIISI---PKGQWDASYAIGL----TRKQTIR 137 (226)
Q Consensus 94 ~ii~l~l~~~~~~~~i~r~~l~~v---~~~~~EAA~alG~----s~~q~~~ 137 (226)
+|++|+= ..--++|+|++||+| -++.+||.+.+-- .+.+.+|
T Consensus 378 ~I~GlTr--~T~~~Hi~RA~LEaiafQ~RDv~~AM~~D~gg~~~~~~~~Lr 426 (518)
T TIGR01311 378 AIFGLTR--GTTKAHIARAALEAIAFQTRDVLEAMEKDAGGEEIVELKKLR 426 (518)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 9772465--656778789899999998999999987516885103533000
No 104
>PRK01844 hypothetical protein; Provisional
Probab=33.61 E-value=32 Score=14.44 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254781113|r 21 IVVTLPIACISFVISLIIGFFIAV 44 (226)
Q Consensus 21 l~~Tl~~~~~~~~i~~~lg~~la~ 44 (226)
+|..+.+.+++.++|.++|+++|-
T Consensus 3 ~~~~Ili~i~~li~G~~~GffiaR 26 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599999999999999999999999
No 105
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=32.89 E-value=33 Score=14.38 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCCCCCCHHHH---HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33333100110---0000157899988752833689986517463565778752235764456778788
Q gi|254781113|r 91 FVAIIISLTLN---FSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEF 156 (226)
Q Consensus 91 ~~~~ii~l~l~---~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~ 156 (226)
+..++..+..- +.+|. ..-+++|-.-|||.+++.+.+ .+.|||+.-..+-+++-..
T Consensus 165 ~~Kg~~lLl~sGiF~~GY~------~Y~~~a~PmHEAA~~~~vd~~----~~~LPq~iGm~iGg~i~~~ 223 (336)
T TIGR00776 165 LKKGILLLLVSGIFTIGYL------VYVVVAKPMHEAAAALGVDGL----SVLLPQAIGMVIGGIIFNL 223 (336)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHH
T ss_conf 2578999999878999999------998606626788888245545----6684348888777899875
No 106
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated
Probab=32.70 E-value=33 Score=14.36 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999997
Q gi|254781113|r 14 PQLLYAAIVVTLPIACISFVISLIIGFFIAVIRI 47 (226)
Q Consensus 14 ~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~ 47 (226)
-+...++++.++.++.-....+.++|+..++.+.
T Consensus 7 i~l~~~al~~~l~ls~P~L~~alvVGl~Isi~QA 40 (89)
T PRK05700 7 MDLFREAMKVALMLAAPLLLVALIVGLVVSIFQA 40 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999988899999999999999999
No 107
>pfam02687 FtsX Predicted permease. This is a family of predicted permeases and hypothetical transmembrane proteins. The lipoprotein-releasing system transmembrane protein lolC from Buchnera aphidicola has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both lolC and an ATP-binding cassette transporter-like protein from Streptococcus cristatus have been shown to require ATP.
Probab=30.90 E-value=36 Score=14.19 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 336899865174635657787522357
Q gi|254781113|r 119 KGQWDASYAIGLTRKQTIRHIILPQTI 145 (226)
Q Consensus 119 ~~~~EAA~alG~s~~q~~~~iilPqal 145 (226)
+.+.---|++|++++|..+....-..+
T Consensus 80 ~~ei~ilka~G~~~~~i~~~~~~e~~~ 106 (174)
T pfam02687 80 RREIGILKALGASKKQIFKLLLLEALL 106 (174)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999299999999999999999
No 108
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.96 E-value=39 Score=14.00 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999997
Q gi|254781113|r 14 PQLLYAAIVVTLPIACISFVISLIIGFFIAVIRI 47 (226)
Q Consensus 14 ~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~ 47 (226)
-+...++.+.++.++.-..+.+.+.|+..++.+.
T Consensus 7 l~i~~~ai~~~L~l~~P~ll~alvvGLvIsifQA 40 (89)
T COG1987 7 LDIGQEAIWLVLMLSAPVLLVALVVGLVISIFQA 40 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999899999999999999999
No 109
>pfam02405 DUF140 Domain of unknown function DUF140. This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 150 amino acids long.
Probab=28.64 E-value=39 Score=13.96 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=32.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 433333310011000001578999887528336899865174635657787522
Q gi|254781113|r 89 DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILP 142 (226)
Q Consensus 89 ~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilP 142 (226)
.|...+++.-+=.++++.+|+ |-..+ .+|+||-+.+|-++.+ +.+.|
T Consensus 59 gP~ltalilagR~Gsa~aAEl---GtM~v-~eeIDAL~~mgi~P~~---yLv~P 105 (215)
T pfam02405 59 GPVLTALLVAGRVGSAITAEL---GTMRV-TEEIDALEVMGIDPIR---YLVLP 105 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHCCCHHH---HHHHH
T ss_conf 899999999998713999999---87269-8899999984899247---76598
No 110
>COG0767 Ttg2B ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.03 E-value=46 Score=13.59 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=32.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 4333333100110000015789998875283368998651746356577875223
Q gi|254781113|r 89 DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQ 143 (226)
Q Consensus 89 ~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPq 143 (226)
.|...+++.-+=..+++.+|+ +.++. .+|+||-+.+|-++.+ +.+.|-
T Consensus 106 gPvlTal~~AGr~gSa~tAeI--G~Mri--tEEIDAlevmgidPi~---~LV~PR 153 (267)
T COG0767 106 GPVLTALVVAGRVGSAITAEI--GAMRI--TEEIDALEVMGIDPIS---RLVAPR 153 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HCCHH--HHHHHHHHHHCCCCHH---HHHHHH
T ss_conf 789999999853388999998--12669--8899999985779438---887888
No 111
>COG3641 PfoR Predicted membrane protein, putative toxin regulator [General function prediction only]
Probab=24.90 E-value=46 Score=13.58 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=46.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 899865174635657787522357644567787-------8898752679999976999999999998323577999999
Q gi|254781113|r 122 WDASYAIGLTRKQTIRHIILPQTITTSAVPLSS-------EFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCE 194 (226)
Q Consensus 122 ~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~-------~~i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~ 194 (226)
.-.|...|.++.|.=-.+-=|- ..+|-+.+ .++..+++|+..+--|...+.+.-+......++.......
T Consensus 236 ~~~a~~~gt~km~~PNiik~Pi---i~lPll~taiv~~l~~~vf~i~gt~asAGfG~~GlVGpI~af~~~~~~~~~~~~~ 312 (348)
T COG3641 236 VPFALLIGTPKMQMPNIIKNPI---IMLPLLTTAIVGGLITTVFNIQGTPASAGFGTSGLVGPINAFALMGFSGPVNLLL 312 (348)
T ss_pred CHHHHHHCCCHHHCCHHHHCCH---HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 1579984750541406772627---7888999989888888850303684434676201214789987037880379999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Q ss_conf 9999999999999999999998621-3747
Q gi|254781113|r 195 LAFVYLILTSFCYIIQIKIESSVTQ-HTYS 223 (226)
Q Consensus 195 ~~~i~l~i~~~~~~l~~~lerr~~~-~~~~ 223 (226)
..+.|+++-....++.+.+-||.-| |+.+
T Consensus 313 iil~~fv~P~v~a~i~~~~~~K~~~l~~~D 342 (348)
T COG3641 313 IILLHFVLPFVIAFIVHELLKKKLKLYTGD 342 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999999771223763
No 112
>pfam07234 DUF1426 Protein of unknown function (DUF1426). This family consists of several Banana bunchy top virus proteins of around 120 residues in length. One member is annotated as a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=23.32 E-value=50 Score=13.40 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 79999999999
Q gi|254781113|r 53 IISLIMHFYVW 63 (226)
Q Consensus 53 ~~~~~~~~~i~ 63 (226)
.++.+++-.++
T Consensus 41 YIK~~VrylVE 51 (117)
T pfam07234 41 YIKGLVRYLVE 51 (117)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 113
>PRK01905 DNA-binding protein Fis; Provisional
Probab=21.34 E-value=54 Score=13.17 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=20.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHH
Q ss_conf 89998875283368998651746356
Q gi|254781113|r 109 IIRSSIISIPKGQWDASYAIGLTRKQ 134 (226)
Q Consensus 109 i~r~~l~~v~~~~~EAA~alG~s~~q 134 (226)
++...++...-.|.+||+.+|.++-.
T Consensus 41 Li~~vl~~~~gNQ~kAA~~LGinR~T 66 (77)
T PRK01905 41 LLEVVMEQAGGNQSLAAEYLGINRNT 66 (77)
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHH
T ss_conf 99999998459499999997865888
No 114
>pfam03342 Rhabdo_M1 Rhabdovirus M1 matrix protein (M1 polymerase-associated protein).
Probab=21.26 E-value=43 Score=13.73 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=19.1
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 75283368998651746356577875
Q gi|254781113|r 115 ISIPKGQWDASYAIGLTRKQTIRHII 140 (226)
Q Consensus 115 ~~v~~~~~EAA~alG~s~~q~~~~ii 140 (226)
+..|++|+.+.|++|+++--+---++
T Consensus 145 k~LD~DQVk~eRALGF~rGy~tA~~v 170 (219)
T pfam03342 145 KPLDKDQVKAERALGFGRGYRTALNV 170 (219)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98988998899875313308999999
No 115
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=21.11 E-value=55 Score=13.15 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9887528---336899865174635657787522357644567787
Q gi|254781113|r 112 SSIISIP---KGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSS 154 (226)
Q Consensus 112 ~~l~~v~---~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~ 154 (226)
++++-+| -.|.|||.-+|-|+ |+||+.+ -.|...+.-.+++
T Consensus 40 EAlRLvD~~~l~QeeAA~rMgISr-~Tfwr~l-~sAR~KvA~aLve 83 (99)
T COG1342 40 EALRLVDYEGLTQEEAALRMGISR-QTFWRLL-TSARKKVADALVE 83 (99)
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCH-HHHHHHH-HHHHHHHHHHHHC
T ss_conf 899988686105789999846429-9999999-9999999999855
Done!