HHsearch alignment for GI: 254781113 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.84 E-value=1.1e-19 Score=126.86 Aligned_cols=176 Identities=16% Similarity=0.208 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999706763799999999999855532222221112--233321014433333310011000001578999
Q gi|254781113|r 35 SLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFY--GLPHIGIVFDSFVAIIISLTLNFSAYISEIIRS 112 (226)
Q Consensus 35 ~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f--~~~~~g~~~~~~~~~ii~l~l~~~~~~~~i~r~ 112 (226)
T Consensus 1 Gv~lG~~~a----~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~ 73 (183)
T pfam00528 1 GIPLGIIAA----LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILG---HGILPAIILALLGWAGYARLIRRA 73 (183)
T ss_pred CHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986999999----5078589999999999999834999999999998423667---899999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCH
Q ss_conf 8875283368998651746356577875223576445677878898752679999976----999999999998323577
Q gi|254781113|r 113 SIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT----IPEIFQTAQRIVSTTYQP 188 (226)
Q Consensus 113 ~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig----~~el~~~a~~i~~~~~~~ 188 (226)
T Consensus 74 ~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~GlG~~~~~a~~~~----d~ 149 (183)
T pfam00528 74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGY----DY 149 (183)
T ss_pred HHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HH
T ss_conf 99706899999999869984341299218989999999999999999999999999936896759999999977----09
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999999998621374
Q gi|254781113|r 189 LIIYCELAFVYLILTSFCYIIQIKIESSVTQHTY 222 (226)
Q Consensus 189 ~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~ 222 (226)
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~d~l~~~ldpr~r 182 (183)
T pfam00528 150 -PEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182 (183)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf -999999999999999999999999987391017