Query gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 226 No_of_seqs 117 out of 6342 Neff 7.4 Searched_HMMs 33803 Date Wed Jun 1 22:11:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781113.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3dhw_A D-methionine transport 100.0 1.3E-31 3.7E-36 192.0 10.0 207 13-220 5-217 (217) 2 >3d31_C Sulfate/molybdate ABC 99.9 3.2E-27 9.5E-32 167.8 13.4 205 15-223 78-295 (295) 3 >2onk_C Molybdate/tungstate AB 99.9 1.2E-22 3.5E-27 142.8 10.5 156 17-173 2-165 (181) 4 >2r6g_G Maltose transport syst 99.9 7.3E-21 2.2E-25 132.9 11.5 153 17-170 9-165 (172) 5 >2r6g_F Maltose transport syst 99.8 3.4E-20 1E-24 129.2 12.4 141 16-171 8-148 (152) 6 >3dhw_A D-methionine transport 93.4 0.15 4.5E-06 26.8 5.0 84 132-216 134-217 (217) 7 >1eto_A FIS, factor for invers 75.2 4 0.00012 19.0 4.0 34 106-139 14-47 (53) 8 >1ojl_A Transcriptional regula 71.9 4.7 0.00014 18.7 3.6 33 107-139 17-49 (51) 9 >1umq_A Photosynthetic apparat 70.9 5.9 0.00017 18.1 4.0 36 104-139 40-75 (81) 10 >3e7l_A Transcriptional regula 68.3 6.9 0.0002 17.7 4.0 37 104-140 18-54 (63) 11 >1ntc_A Protein (nitrogen regu 67.7 6.1 0.00018 18.0 3.5 35 105-139 51-85 (91) 12 >2ict_A Antitoxin HIGA; helix- 59.3 10 0.0003 16.9 3.3 31 106-136 9-39 (46) 13 >2j8s_A ACRB, acriflavine resi 41.2 21 0.00061 15.1 7.5 26 3-28 9-34 (251) 14 >2cw1_A SN4M; lambda CRO fold, 37.2 17 0.0005 15.6 1.6 16 118-133 13-28 (65) 15 >2auw_A Hypothetical protein N 30.5 31 0.00093 14.1 3.8 32 108-139 4-35 (81) 16 >3cec_A Putative antidote prot 29.0 33 0.00098 14.0 3.3 34 103-136 16-49 (56) 17 >1g2h_A Transcriptional regula 24.1 41 0.0012 13.5 3.8 31 108-139 24-54 (61) No 1 >>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:) Probab=99.97 E-value=1.3e-31 Score=192.03 Aligned_cols=207 Identities=19% Similarity=0.286 Sum_probs=173.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999999999706------7637999999999998555322222211122333210 Q gi|254781113|r 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFF------SDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGI 86 (226) Q Consensus 13 ~~~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~------~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~ 86 (226) ..+.+++++++|+.+++.++++++++|+++|+...+. ..+.+........+.++++|.++.+...+...+..+. T Consensus 5 ~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (217) T 3dhw_A 5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVG 84 (217) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999999999999999999987344320189999999999999999999999999986455204 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 14433333310011000001578999887528336899865174635657787522357644567787889875267999 Q gi|254781113|r 87 VFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 (226) Q Consensus 87 ~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~ 166 (226) ...++.+.++++++...||+.++.|++++++|++++|||+++|+|+||++|||++||++|.+++++.+.+...+++++.+ T Consensus 85 ~~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v~lP~~~p~i~~~~~~~~~~~~~~~~~~ 164 (217) T 3dhw_A 85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG 164 (217) T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 53018899898899724689899998888615027788860698742142673099769999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 997699999999999832357799999999999999999999999999986213 Q gi|254781113|r 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 (226) Q Consensus 167 s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~ 220 (226) +.+|.++....+++....++++...+ ..+++..++...+..+.++++||++|| T Consensus 165 ~~ig~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~l~~~~~rR 217 (217) T 3dhw_A 165 GAVGAGGLGQIGYQYGYIGYNATVMN-TVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217) T ss_dssp CSTTCCHHHHHHHHHHHSSCCTTHHH-HHHHHHHHHHHHHHHHCC--------- T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99987599999999999750189999-999999999999999999999985699 No 2 >>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:) Probab=99.95 E-value=3.2e-27 Score=167.85 Aligned_cols=205 Identities=10% Similarity=0.107 Sum_probs=156.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H Q ss_conf 999999999999999999999999999999997067637999999999998555322222211122333----------2 Q gi|254781113|r 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPH----------I 84 (226) Q Consensus 15 ~~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~----------~ 84 (226) ..+++++++|+.++++++++++++|+++|+...+.+.+ .+............+|..+.....+..... . T Consensus 78 ~~~~~~l~~Tl~~~~~~~~~~~~ig~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (295) T 3d31_C 78 RSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFP-GKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESY 156 (295) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC T ss_conf 89999999999999999999999999999999963664-79999999999999999999999999997266324303321 Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10144333333100110000015789998875283368998651746356577875223576445677878898752679 Q gi|254781113|r 85 GIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164 (226) Q Consensus 85 g~~~~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~ts 164 (226) .....+.+..+++..+...||+..+++++++++|++++|||+++|+|+||++|||++|++.|.++.+....++..+++.. T Consensus 157 ~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~~~~~~~~~~ 236 (295) T 3d31_C 157 IQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFG 236 (295) T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67123999999999999999999999999975050589999876998262127746996999999999999999999999 Q ss_pred HHHHHHHHHHHHHHH---HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999976999999999---99832357799999999999999999999999999986213747 Q gi|254781113|r 165 VASTITIPEIFQTAQ---RIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYS 223 (226) Q Consensus 165 l~s~ig~~el~~~a~---~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~~lerr~~~~~~~ 223 (226) ....+|.++.+.... ...+.++ ....+.++++++++..+..+..++.||.++|||+ T Consensus 237 ~~~~l~~~~~~~~~~i~~~~~~~~~---~~~~a~~~i~~~~~~~~~~~~~~~~~r~~~~~r~ 295 (295) T 3d31_C 237 AVVILAYYPMVGPTLIYDRFISYGL---SASRPIAVLLILVTLSIFLVIRTLSAGWSIYDRD 295 (295) T ss_dssp HHHHHHCTTCCHHHHHHHHHHHSTT---TTTHHHHHHHHHHHHHHHHHHC------------ T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999958973199999999994489---9999999999999999999999999760364579 No 3 >>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249) Probab=99.89 E-value=1.2e-22 Score=142.76 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=130.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCC Q ss_conf 999999999999999999999999999999706763799999999999855532222221112233321--------014 Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIG--------IVF 88 (226) Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g--------~~~ 88 (226) +++++++|+.+++++++++.++|+++|.... ..++..+...+........+|..+..+..++.....+ ... T Consensus 2 ~~~~l~~Tl~~a~~~~~i~~~ig~~~a~~~~-~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (181) T 2onk_C 2 VWKVVLTTYYAALISTLIAVIFGTPLAYILA-RKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFV 80 (181) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCSSCCT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 9999999999999999999999999999886-415631589999998741210122233310023553222221234544 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 43333331001100000157899988752833689986517463565778752235764456778788987526799999 Q gi|254781113|r 89 DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVAST 168 (226) Q Consensus 89 ~~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ 168 (226) ..+...+++..+...||...+++++++++|+++.|||+++|+|+||++|||++|++.|.+..+....++..+++.+.... T Consensus 81 ~~~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~q~~~~I~lP~~~p~i~~~~~l~~~~~~~~~~~~~~ 160 (181) T 2onk_C 81 DALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVV 160 (181) T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHT T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHH T ss_conf 43320221011333333122200002235424564543269984340063448662763267518888769999888874 Q ss_pred HHHHH Q ss_conf 76999 Q gi|254781113|r 169 ITIPE 173 (226) Q Consensus 169 ig~~e 173 (226) +|.++ T Consensus 161 ~~~~~ 165 (181) T 2onk_C 161 IAYYP 165 (181) T ss_dssp TCCSS T ss_pred HCCCC T ss_conf 32898 No 4 >>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244) Probab=99.85 E-value=7.3e-21 Score=132.92 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=123.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCC Q ss_conf 999999999999999999999999999999706763799999999999855532222221112233321----0144333 Q gi|254781113|r 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIG----IVFDSFV 92 (226) Q Consensus 17 l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g----~~~~~~~ 92 (226) +++++++|+.++++++++++++|++.|..-.+.+.+. +............+|..+.....+..+...+ ....... T Consensus 9 ~~~~l~~Sl~~a~~~~~i~~~ig~~~a~~~~~~~~~~-~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (172) T 2r6g_G 9 VLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPG-KATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTH 87 (172) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT-SHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTSSTTSH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHCCCCCCCHHHEEEHHEECCCCCCCCCCCCCCCE T ss_conf 9999864899999999999863103333332044147-889998762332133112011031002445651222246750 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 333100110000015789998875283368998651746356577875223576445677878898752679999976 Q gi|254781113|r 93 AIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170 (226) Q Consensus 93 ~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig 170 (226) .++++..+...|+.....+++++++|++++||||.+|+|+||++|||++|++.|.+.++....++..+++......++ T Consensus 88 ~~ii~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~f~~V~lP~~~p~i~~~~~l~f~~~~~~~~~~~~l~ 165 (172) T 2r6g_G 88 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLL 165 (172) T ss_dssp HHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHC T ss_pred EEEEECCCCCEEEEEEEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCEECC T ss_conf 000000355115421100036413305655567754940777788888987654677788776443232300340114 No 5 >>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453) Probab=99.84 E-value=3.4e-20 Score=129.23 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=116.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99999999999999999999999999999997067637999999999998555322222211122333210144333333 Q gi|254781113|r 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAII 95 (226) Q Consensus 16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~~~~~~i 95 (226) .+++.+++|+.+++.+++++.++|+++|+...+.+.+. |...+... ..|..+......++. ...+ T Consensus 8 ~~~~~~~~tl~~a~~~~~~~~~~g~~~a~l~~r~~f~g-r~~l~~~~----~lp~~~p~~v~~~~~----------~~li 72 (152) T 2r6g_F 8 PFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRG-KAVYRVLL----ILPYAAWFSDPTTAR----------TMLI 72 (152) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTT-HHHHHHHT----THHHHCTTTSHHHHH----------HHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHH----HHHHHCHHCCCHHHH----------HHHH T ss_conf 99999999999999999999999999999987422462-11413532----388880204821322----------2233 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1001100000157899988752833689986517463565778752235764456778788987526799999769 Q gi|254781113|r 96 ISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITI 171 (226) Q Consensus 96 i~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~ 171 (226) ++..+...|+..+.++++++++|++++||||++|+|+||++|||++|++.|.++++....++..+|+.+....+|. T Consensus 73 ~a~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~lGas~~~~~~~I~lP~~~p~il~~~~l~f~~~~~e~~~~~~l~g 148 (152) T 2r6g_F 73 IVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTN 148 (152) T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHHHHHHHTCHHHHHHHCS T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 3455553224455444320244278999999749994011314631647899999999999999998789999947 No 6 >>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:) Probab=93.42 E-value=0.15 Score=26.82 Aligned_cols=84 Identities=8% Similarity=-0.040 Sum_probs=51.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 35657787522357644567787889875267999997699999999999832357799999999999999999999999 Q gi|254781113|r 132 RKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQI 211 (226) Q Consensus 132 ~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~ig~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~l~~ 211 (226) .+.....-..|..++...-.+...+-... .....+.-+.+...........+............+++++++...+.+.+ T Consensus 134 ~~~v~lP~~~p~i~~~~~~~~~~~~~~~~-~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~ 212 (217) T 3dhw_A 134 VRKVLLPEALPGLVNAATITLITLVGYSA-MGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVR 212 (217) T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHH-HCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHCC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 26730997699999999999999999999-99999875999999999997501899999999999999999999999999 Q ss_pred HHHHH Q ss_conf 99998 Q gi|254781113|r 212 KIESS 216 (226) Q Consensus 212 ~lerr 216 (226) ++||| T Consensus 213 ~~~rR 217 (217) T 3dhw_A 213 AVTRK 217 (217) T ss_dssp ----- T ss_pred HHCCC T ss_conf 85699 No 7 >>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98) Probab=75.24 E-value=4 Score=19.04 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 1578999887528336899865174635657787 Q gi|254781113|r 106 ISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHI 139 (226) Q Consensus 106 ~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~i 139 (226) =-+.++.+++.-+-.+-+||+.+|.|+...++++ T Consensus 14 E~~~I~~aL~~~~gn~s~aA~~Lgisr~tL~rkl 47 (53) T 1eto_A 14 EQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKL 47 (53) T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999929989999999798999999999 No 8 >>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304) Probab=71.94 E-value=4.7 Score=18.69 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=28.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 578999887528336899865174635657787 Q gi|254781113|r 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHI 139 (226) Q Consensus 107 ~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~i 139 (226) .+.++.+++.-+-.+-+||+.+|.|+...++|+ T Consensus 17 ~~~I~~aL~~~~Gn~~~aA~~LGisr~TL~rkl 49 (51) T 1ojl_A 17 KEVILAALEKTGGNKTEAARQLGITRKTLLAKL 49 (51) T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999999929989999999888999999986 No 9 >>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} (A:) Probab=70.91 E-value=5.9 Score=18.12 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 001578999887528336899865174635657787 Q gi|254781113|r 104 AYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHI 139 (226) Q Consensus 104 ~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~i 139 (226) -+-.+.++.+++.-+..+.+||+.+|.|+.+.+++. T Consensus 40 ~~E~~~I~~aL~~~~gn~~~aA~~Lgisr~TL~rkl 75 (81) T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 75 (81) T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999998309999999698999999999 No 10 >>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:) Probab=68.34 E-value=6.9 Score=17.75 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 0015789998875283368998651746356577875 Q gi|254781113|r 104 AYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHII 140 (226) Q Consensus 104 ~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~ii 140 (226) .+=.+.+..+++.-.-.+-+||+.+|.|+.+.++++- T Consensus 18 ~~Er~~i~~aL~~~~gn~~~aA~~Lgisr~tL~~klk 54 (63) T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIK 54 (63) T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999999999199899999998959999999999 No 11 >>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:) Probab=67.66 E-value=6.1 Score=18.03 Aligned_cols=35 Identities=6% Similarity=0.111 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 01578999887528336899865174635657787 Q gi|254781113|r 105 YISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHI 139 (226) Q Consensus 105 ~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~i 139 (226) +-.+.++.+++.-...+-+||+.+|.|+...+|+. T Consensus 51 ~e~~~i~~~L~~~~gn~~~aA~~LGisR~TL~rkl 85 (91) T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91) T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999999949949999999798999999999 No 12 >>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46) Probab=59.28 E-value=10 Score=16.86 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH Q ss_conf 1578999887528336899865174635657 Q gi|254781113|r 106 ISEIIRSSIISIPKGQWDASYAIGLTRKQTI 136 (226) Q Consensus 106 ~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~ 136 (226) -.|+++.-++...-+|.|.|+.+|.|+...- T Consensus 9 PGe~L~E~Le~~gis~~~lA~~lgvs~~~is 39 (46) T 2ict_A 9 PGDIIQESLDELNVSLREFARAXEIAPSTAS 39 (46) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCCHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 7899999999979999999999977789999 No 13 >>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:505-567,A:868-1055) Probab=41.19 E-value=21 Score=15.13 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=13.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 30899999999999999999999999 Q gi|254781113|r 3 YEWFNLIIDSFPQLLYAAIVVTLPIA 28 (226) Q Consensus 3 ~~w~~~~~~~~~~~l~~~l~~Tl~~~ 28 (226) |.||+-..|...+..-.++...+.-. T Consensus 9 ~~~f~~~f~~~~~~y~~~~~~~~~~~ 34 (251) T 2j8s_A 9 FGWFNRMFEKSTHHYTDSVGGILRST 34 (251) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS T ss_pred HHHHHHCCHHHHHHHHHHHHHCCHHH T ss_conf 66631000344333466764210011 No 14 >>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} (A:) Probab=37.18 E-value=17 Score=15.59 Aligned_cols=16 Identities=44% Similarity=0.464 Sum_probs=14.3 Q ss_pred CCCHHHHHHHHCCCHH Q ss_conf 8336899865174635 Q gi|254781113|r 118 PKGQWDASYAIGLTRK 133 (226) Q Consensus 118 ~~~~~EAA~alG~s~~ 133 (226) |+.|.-|||++|.|.. T Consensus 13 dknqeyaaralglsqk 28 (65) T 2cw1_A 13 DKNQEYAARALGLSQK 28 (65) T ss_dssp TSCHHHHHHHSSSCHH T ss_pred HHHHHHHHHHHCCHHH T ss_conf 0028899998411699 No 15 >>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170) Probab=30.46 E-value=31 Score=14.14 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=23.5 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 78999887528336899865174635657787 Q gi|254781113|r 108 EIIRSSIISIPKGQWDASYAIGLTRKQTIRHI 139 (226) Q Consensus 108 ~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~i 139 (226) +.+++=.+...-+|-+||.++|.|+.-+-.+- T Consensus 4 e~F~~W~~r~gLsl~~AAeALGisrRmi~YY~ 35 (81) T 2auw_A 4 EXFGDWXHRNNLSLTTAAEALGISRRXVSYYR 35 (81) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999859999999999499999999997 No 16 >>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56) Probab=29.01 E-value=33 Score=14.00 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH Q ss_conf 0001578999887528336899865174635657 Q gi|254781113|r 103 SAYISEIIRSSIISIPKGQWDASYAIGLTRKQTI 136 (226) Q Consensus 103 ~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~ 136 (226) .+.-.|+++.-++...-+|.|-|+.+|.|+.++- T Consensus 16 p~HPGeiL~e~Le~~gis~~~lA~~lgvs~~~is 49 (56) T 3cec_A 16 PIHPGEVIADILDDLDINTANFAEILGVSNQTIQ 49 (56) T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHH T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHH T ss_conf 9883399999999879999999999782789999 No 17 >>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:) Probab=24.05 E-value=41 Score=13.48 Aligned_cols=31 Identities=3% Similarity=0.140 Sum_probs=22.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 78999887528336899865174635657787 Q gi|254781113|r 108 EIIRSSIISIPKGQWDASYAIGLTRKQTIRHI 139 (226) Q Consensus 108 ~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~i 139 (226) +.+..+++. ..+..+||+.+|.++...++++ T Consensus 24 ~~I~~aL~~-~gn~~~aA~~Lgisr~tL~rkl 54 (61) T 1g2h_A 24 QVLKLFYAE-YPSTRKLAQRLGVSHTAIANKL 54 (61) T ss_dssp HHHHHHHHH-SCSHHHHHHHTTSCTHHHHHHH T ss_pred HHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHH T ss_conf 999998403-8738999999586189999899 Done!