HHSEARCH alignment of GI: 254781113 and SCOP domain: d3dhwa1

Alignment
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=99.96  E-value=6.1e-30  Score=180.64  Aligned_cols=192  Identities=20%  Similarity=0.311  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999999999999999999999970------67637999999999998555322222211122333210144
Q gi|254781113|r   16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIF------FSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFD   89 (226)
Q Consensus        16 ~l~~~l~~Tl~~~~~~~~i~~~lg~~la~~~~~------~~~~~~~~~~~~~i~~~r~iP~lv~l~~~~f~~~~~g~~~~   89 (226)
                      ++++++++|+.+++.+++++.++|+++|+....      .+++........++++++++|..+++++.+...........
T Consensus         3 lll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~   82 (203)
T d3dhwa1           3 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSI   82 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             89999999999999999999999999999999987444320089999999999999999999999999986355404541


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33333310011000001578999887528336899865174635657787522357644567787889875267999997
Q gi|254781113|r   90 SFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI  169 (226)
Q Consensus        90 ~~~~~ii~l~l~~~~~~~~i~r~~l~~v~~~~~EAA~alG~s~~q~~~~iilPqal~~ilp~l~~~~i~lik~tsl~s~i  169 (226)
                      ++.++++++++++.||+.+.++++++++|++|+||||++|+|+||++|||++||+.|.++++..++++..+++++++..+
T Consensus        83 ~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~i  162 (203)
T d3dhwa1          83 GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV  162 (203)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCST
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             19999999999864899999998888436206899988699444241884099769999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             699999999999832357799999999999999999999
Q gi|254781113|r  170 TIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYI  208 (226)
Q Consensus       170 g~~el~~~a~~i~~~~~~~~~~~~~~~~i~l~i~~~~~~  208 (226)
                      |.+++....++.+...+++.......... +++....++
T Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~li~~  200 (203)
T d3dhwa1         163 GAGGLGQIGYQYGYIGYNATVMNTVLVLL-VILVYLIQF  200 (203)
T ss_dssp             TCCHHHHHHHHHHHSSCCTTHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHH
T ss_conf             77599999999998740289999999999-999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]