RPSBLAST alignment for GI: 254781113 and conserved domain: TIGR03004
>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous. Length = 214
Score = 109 bits (274), Expect = 6e-25
Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 1/204 (0%)
Query: 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLF 75
LL VT+ I V++ ++ FF + R+ I+ + Y+ +FRGT LLVQLF
Sbjct: 6 LLLQGAWVTMQITLAGSVLATVLAFFAGLGRVS-GGPILRTVALCYIEVFRGTSLLVQLF 64
Query: 76 VIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQT 135
++ LP IG+ D ++ L L+ AY +EI+R ++ S+ Q +A A+ TR QT
Sbjct: 65 WFYFVLPLIGLSLDPVTTGVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQT 124
Query: 136 IRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCEL 195
+R I LPQ + + I +LK TS+ S I++ ++ AQ I + T L I+
Sbjct: 125 LRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLTFAAQSIRNLTLDTLSIFAIT 184
Query: 196 AFVYLILTSFCYIIQIKIESSVTQ 219
Y ++ +I +E V +
Sbjct: 185 LLCYFVMALIIMLIMRVLERVVRR 208