RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter
(permease) [Candidatus Liberibacter asiaticus str. psy62]
         (226 letters)



>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease
           component [Amino acid transport and metabolism].
          Length = 222

 Score =  173 bits (440), Expect = 3e-44
 Identities = 85/211 (40%), Positives = 136/211 (64%), Gaps = 2/211 (0%)

Query: 5   WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWI 64
              L+   +   L   ++VTL +  +S V+ L++G  +A++R+  +   +  +   YV I
Sbjct: 6   GALLLNLDYLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGN-KPLRWLARAYVEI 64

Query: 65  FRGTPLLVQLFVIFYG-LPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWD 123
           FRGTPLLVQLF I++G LP +GI  D F A +I+L+LN  AY++EI+R+ I S+PKGQW+
Sbjct: 65  FRGTPLLVQLFFIYFGLLPLLGIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWE 124

Query: 124 ASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVS 183
           A+ A+GLT  QT+R++ILPQ +     PL ++FIS++K TS+ S I + E+ + AQ I +
Sbjct: 125 AARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELTRAAQIIAA 184

Query: 184 TTYQPLIIYCELAFVYLILTSFCYIIQIKIE 214
            T++P  +Y   A +YLIL     ++  ++E
Sbjct: 185 RTFRPFEVYLLAALIYLILCLPLSLLSRRLE 215


>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system,
           permease component [Amino acid transport and
           metabolism].
          Length = 228

 Score =  148 bits (376), Expect = 9e-37
 Identities = 78/227 (34%), Positives = 133/227 (58%), Gaps = 12/227 (5%)

Query: 4   EWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVW 63
            +++  ++  P+LL + +  TL +  IS VI  ++   +A+ R+   +  +S     Y +
Sbjct: 1   MYWDWFLEYLPRLL-SGLATTLWLLIISLVIGFVLALPLALARVS-KNRWVSWPARAYTY 58

Query: 64  IFRGTPLLVQLFVIFYGLPHIGIVFDS----------FVAIIISLTLNFSAYISEIIRSS 113
           +FRGTPLLVQLF+I+YGL     + +S          +   +++LTLN +AY +EI R +
Sbjct: 59  VFRGTPLLVQLFLIYYGLGQFEWIRESIFLWPFLREAWFCAVLALTLNTAAYTTEIFRGA 118

Query: 114 IISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173
           I ++P+GQW+A+ A+G++R +T+R IILP  +  +    S+E I +LKST++ASTIT+ +
Sbjct: 119 IRAVPRGQWEAARALGMSRFKTLRRIILPSALRRALPAYSNEVILMLKSTALASTITVMD 178

Query: 174 IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220
           +   A+ I S TY P  ++     +YLI+T    ++   IE     H
Sbjct: 179 LMGYARLINSRTYDPYEVFGIAGAIYLIITGILTLLFRLIERRWLAH 225


>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease
           component [Amino acid transport and metabolism].
          Length = 230

 Score =  124 bits (314), Expect = 2e-29
 Identities = 62/227 (27%), Positives = 121/227 (53%), Gaps = 15/227 (6%)

Query: 8   LIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRG 67
           L++  +   L    +VTL +A  S ++ L++G   A+ ++   + ++ L+ + Y  + RG
Sbjct: 1   LMLAGWGDELLQGALVTLELAVCSLILGLLLGLLGALGKLS-KNRLLRLLGNVYTTVIRG 59

Query: 68  TPLLVQLFVIFYG----LPHIGIVFDS----------FVAIIISLTLNFSAYISEIIRSS 113
            P L+ + +I++G    L  +  V  +          FVA +I+L L F AY +E +R +
Sbjct: 60  VPELLLILLIYFGGQILLNTLADVTGALGVGFIDISPFVAGVIALGLIFGAYATETLRGA 119

Query: 114 IISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173
             ++PKGQ +A+ A+GL+R QT R I+LPQ    +   L + ++ +LK T++ S I + +
Sbjct: 120 FKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKDTALVSLIGLND 179

Query: 174 IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220
           + +  Q    +T +P   Y   A +YL++T    ++ + +E   ++ 
Sbjct: 180 LMRQTQLAAGSTKEPFTFYIVAALIYLVITLVSNVVLLFLERRASRG 226


>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease
           component [Amino acid transport and metabolism].
          Length = 397

 Score = 76.1 bits (187), Expect = 6e-15
 Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 11/148 (7%)

Query: 67  GTPLLVQL---FVIFYGLPHIG--------IVFDSFVAIIISLTLNFSAYISEIIRSSII 115
           G PLL Q      + + +P +G        +V   F A+ ++L+   +A+I+EI+R+ I 
Sbjct: 231 GLPLLAQWLFGAPLTFDVPALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIVRAGIQ 290

Query: 116 SIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIF 175
           ++ KGQ +A+ ++GL    T+R +I+PQ +     PL+S+++++ K++S+A  I  P++ 
Sbjct: 291 AVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTSQYLNLTKNSSLAIAIGYPDLV 350

Query: 176 QTAQRIVSTTYQPLIIYCELAFVYLILT 203
             A  +++ T Q + +      VYL L+
Sbjct: 351 AVAGTVLNQTGQAVEVVAIWMLVYLSLS 378



 Score = 37.2 bits (86), Expect = 0.003
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 11  DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPL 70
            ++ +     ++ TL +A +  + + IIGF I + R+   + +I  +   YV IFR  P 
Sbjct: 83  STYGRAFIVGLLNTLLVAALGIITATIIGFLIGIARLS-DNWLIRKLSTVYVEIFRNIPP 141

Query: 71  LVQLFVIFYGL 81
           L+Q+F  ++G+
Sbjct: 142 LLQIFFWYFGV 152


>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
           Binding Protein (PBP)-dependent ATP-Binding Cassette
           (ABC) transporters which generally bind type 2 PBPs.
           These types of transporters consist of a PBP, two TMs,
           and two cytoplasmic ABC ATPase subunits, and are mainly
           involved in importing solutes from the environment. The
           solute is captured by the PBP which delivers it to a
           gated translocation pathway formed by the two TMs. The
           two ABCs bind and hydrolyze ATP and drive the transport
           reaction. For these transporters the ABCs and TMs are on
           independent polypeptide chains. These systems transport
           a diverse range of substrates. Most are specific for a
           single substrate or a group of related substrates;
           however some transporters are more promiscuous,
           transporting structurally diverse substrates such as the
           histidine/lysine and arginine transporter in
           Enterobacteriaceae. In the latter case, this is achieved
           through binding different PBPs with different
           specificities to the TMs. For other promiscuous
           transporters such as the multiple-sugar transporter Msm
           of Streptococcus mutans, the PBP has a wide substrate
           specificity. These transporters include the
           maltose-maltodextrin, phosphate and sulfate
           transporters, among others..
          Length = 190

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 4/186 (2%)

Query: 21  IVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYG 80
           ++ TL +A I+ +++L++G  + +I       +  L+    + +    P LV   ++   
Sbjct: 1   LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLR-RIIDLLLSLPSLVLGLLLVLL 59

Query: 81  LPHIG---IVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIR 137
              +    I+    +  +I   L  + +   I R+++ SIPK   +A+ A+G +  Q  R
Sbjct: 60  FGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFR 119

Query: 138 HIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAF 197
            IILP  +      L   F   L   ++ S +   E       ++            +A 
Sbjct: 120 RIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAA 179

Query: 198 VYLILT 203
              ++ 
Sbjct: 180 AVALIL 185


>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
           inner membrane component.  The alignments cover the most
           conserved region of the proteins, which is thought to be
           located in a cytoplasmic loop between two transmembrane
           domains. The members of this family have a variable
           number of transmembrane helices.
          Length = 183

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 1/173 (0%)

Query: 39  GFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISL 98
           G  + +I        +  ++   + + +  P  V   ++   +  + I+    +  II  
Sbjct: 1   GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVV-ISILSILGHGILPAIILA 59

Query: 99  TLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFIS 158
            L ++ Y   I R+++ S+P    +A+ A+G +R Q  R IILP  +      L+  F  
Sbjct: 60  LLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

Query: 159 ILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQI 211
            L    +   +                Y    I   +    LIL     ++ I
Sbjct: 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDI 172


>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 222

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 42/206 (20%), Positives = 95/206 (46%), Gaps = 16/206 (7%)

Query: 15  QLLYAAIVVTLPIACISFVISLIIGFFIAVIRI------FFSDTIISLIMHFYVWIFRGT 68
           QLL+ A + TL +  +S + + +IG  + V+           + ++  I+   V I R  
Sbjct: 12  QLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSI 71

Query: 69  PLLVQLFVIFYGLPHIGIVFDSFV---AIIISLTLNFSAYISEIIRSSIISIPKGQWDAS 125
           P ++ L  +   +P   ++  + +   A I+ LT+  + +++ ++ S++  + KG  +A+
Sbjct: 72  PFIILLVAL---IPLTRLIVGTSIGTTAAIVPLTIGAAPFVARLVESALREVDKGVIEAA 128

Query: 126 YAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTT 185
            A+G +  Q IR ++LP+ +      ++   IS++  +++A  I    +   A R     
Sbjct: 129 QAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGAIGGGGLGDLAIRYGYQR 188

Query: 186 YQPLIIYCELAFVYLILTSFCYIIQI 211
           +   ++        +IL     +IQ 
Sbjct: 189 FNTDVMV----VAVVILLILVQLIQS 210


>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 289

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 33/151 (21%), Positives = 73/151 (48%), Gaps = 9/151 (5%)

Query: 11  DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPL 70
           D   +LLY A + +L I  ++ +ISL+IG  + ++  +F   +  ++M     IF   P 
Sbjct: 76  DILSRLLYGARI-SLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRI-TDIFLAFPS 133

Query: 71  LVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQW-DASYAIG 129
           L+   ++      + I+    + +I++L L      + I+R  ++S+ + ++ +A+ A+G
Sbjct: 134 LLLAILL------VAILGPGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARALG 187

Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISIL 160
            +  + I   ILP  +    V  + +    +
Sbjct: 188 ASTLRIIFRHILPNVLPPLIVLATLDIGGAI 218


>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 292

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 29/128 (22%), Positives = 65/128 (50%), Gaps = 3/128 (2%)

Query: 17  LYAAIVVTLPIACISFVISLIIGFFIAV-IRIFFSDTIISLIMHFYVWIFRGTP-LLVQL 74
           +  AIV TL +  ++ +I + +G    + +  +   + ++ ++ F + I    P ++  L
Sbjct: 69  IGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGL 128

Query: 75  FVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQ 134
           F + + +  +G  F S +A  ++L L     +      ++ ++P    +A+YA+G T+ Q
Sbjct: 129 FGLGFFVVTLGFGF-SALAGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQ 187

Query: 135 TIRHIILP 142
           TI  ++LP
Sbjct: 188 TIFKVVLP 195


>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 19/132 (14%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 16  LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL--VQ 73
            L+  ++ +L    + F ++ ++G  + ++       ++  ++   V + R  P L    
Sbjct: 58  ELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSR--LLERLLDPLVQVLRPIPPLALAP 115

Query: 74  LFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRK 133
           L ++++G+     +  + +     + +N            + S+     + +  +G +R 
Sbjct: 116 LAILWFGIGETSKIVIAVLGAFFPILIN--------TLDGVRSVDPDLLELARTLGASRW 167

Query: 134 QTIRHIILPQTI 145
           Q +R +ILP  +
Sbjct: 168 QILRKVILPAAL 179


>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component
           [Carbohydrate transport and metabolism].
          Length = 281

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 3   YEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYV 62
           Y         F +    +++V +    +S ++S +  + +A  R      +  L++    
Sbjct: 61  YRTVFSGGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLL--LT 118

Query: 63  WIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQW 122
            +     LL+ L+++   L     + +++  +I+        +   ++R    +IPK   
Sbjct: 119 LMLPAQVLLIPLYLLMRKLG----LLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELE 174

Query: 123 DASYAIGLTRKQTIRHIILPQTITTSAV 150
           +A+   G +  Q    I+LP      A 
Sbjct: 175 EAARIDGASEFQIFFKIVLPLAKPGLAA 202


>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 310

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 19  AAIVVTLPIACISFVISLIIGFFIAV-IRIFFSDTIISLIMHFYVWIFRGTPLLV-QLFV 76
             I  TL  + I+ +I++ +G   A+ +  +     +  ++   + +  G P +V   F 
Sbjct: 79  PPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFG 138

Query: 77  IFYGLP------------HIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDA 124
           +F   P            ++G    S +   I L +     I+ + R ++ ++P+   +A
Sbjct: 139 LFVLAPFLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREA 198

Query: 125 SYAIGLTRKQTIRHIILP 142
           +YA+G T+ +TIR +ILP
Sbjct: 199 AYALGATKWETIRKVILP 216


>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
           [Inorganic ion transport and metabolism].
          Length = 540

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 29/170 (17%), Positives = 67/170 (39%), Gaps = 3/170 (1%)

Query: 5   WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWI 64
              L    F Q L  ++++ L  A ++ V++L++ + +  +R   S  +  L M      
Sbjct: 323 SLVLASPQFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERLSMLPLA-- 380

Query: 65  FRGTPLLVQLFVIFYGLPHIGIV-FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWD 123
             G  L + L ++F     +      + + ++++  L F  +    +R+++  I     +
Sbjct: 381 VPGVVLALGLLLLFRAPDGLLYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEE 440

Query: 124 ASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173
           A+ ++G +  +  R I LP          +  F   +   S    +  P 
Sbjct: 441 AARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGSPG 490



 Score = 35.6 bits (82), Expect = 0.013
 Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 26/236 (11%)

Query: 13  FPQLLYAAIVVTLPIACISFVISLIIGFFIAVI---------RIFFSDTIISLIMHFYVW 63
               L+  +  TL +A +  ++S+++G  +A +         R+      + L++  +V 
Sbjct: 50  SDPYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVV 109

Query: 64  IF-------RGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIIS 116
                       PL   L ++ +  P I         I+++L          ++ +++ +
Sbjct: 110 ALAWISLFGPSGPLAALLELLGFESPSI----YGLGGILLALVFFNYPLAYLLVLAALET 165

Query: 117 IPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP---- 172
           IP    +A+  +G +R Q  R + LP      A      F+  L        +       
Sbjct: 166 IPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTPLILGGGYTTL 225

Query: 173 --EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK 226
              I+Q            L+    L     +L     + + K +S+++       +
Sbjct: 226 ETAIYQAIMSSFDLARAALLALLLLLITAALLLLERRLRRAKQKSTLSGKGSRPKQ 281


>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system,
           permease component [General function prediction only].
          Length = 733

 Score = 35.4 bits (81), Expect = 0.013
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 53  IISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAY--ISEII 110
            + L       +F G  L V L          GI +D   A+++   + F+    I  I 
Sbjct: 552 ALWLSPELENALF-GGDLRVWL-------AQDGIGYDQRNALVVGFAMGFAVIPTIFSIA 603

Query: 111 RSSIISIPKGQWDASYAIGLTRKQTIRHIILP 142
             +I S+PK   D S A+G T  QT+ +++L 
Sbjct: 604 EDAIFSVPKSLSDGSLALGATPWQTLIYVVLL 635


>gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 317

 Score = 35.1 bits (81), Expect = 0.014
 Identities = 27/174 (15%), Positives = 65/174 (37%), Gaps = 19/174 (10%)

Query: 15  QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTP----- 69
            L+   +  TL +A ++ ++++++G  + ++      + I  ++     +    P     
Sbjct: 89  DLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLG 148

Query: 70  -LLVQLFVIFYGL------------PHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIIS 116
            LL+ LF +  G                       +   ++L L   A I+ + RSS++ 
Sbjct: 149 LLLILLFSVKLGWLPVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLE 208

Query: 117 IPKGQW-DASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI 169
           +    +   + A GL+ ++ +    L   +      L  +   +L    V  T+
Sbjct: 209 VLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGLQLGGLLGGAVVVETV 262


>gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease
           component [Carbohydrate transport and metabolism].
          Length = 282

 Score = 32.1 bits (73), Expect = 0.11
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 12  SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71
            +   L+ +++V L  A I+  +  +  +  +  R      ++   +     +F G   L
Sbjct: 70  PYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQ--MFPGVAAL 127

Query: 72  VQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLT 131
           + L+V+   L     + ++   +I++         + +I+    +IPK   +A+   G T
Sbjct: 128 IALYVLLKLLG----LLNTLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGAT 183

Query: 132 RKQTIRHIILP 142
           R Q  R I+LP
Sbjct: 184 RFQIFRRILLP 194


>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 225

 Score = 32.1 bits (73), Expect = 0.12
 Identities = 25/136 (18%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 19  AAIVVTLPIACISFVISLIIGFFIAVI---RIFFSDTIISLIMHFYVWIFRGTPLLVQLF 75
            A++++L +A IS ++ L +G  +A +   R F   +++  ++   + +     L   L 
Sbjct: 7   TALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPL-VLPPVVLGFLLL 65

Query: 76  VIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEI---------IRSSIISIPKGQWDASY 126
           V+F     IG   + +  + ++ +   +   S +         +R +  +I +   +A+ 
Sbjct: 66  VLFGRNGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAAR 125

Query: 127 AIGLTRKQTIRHIILP 142
            +G +R +    I LP
Sbjct: 126 TLGASRWEVFFRITLP 141


>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system,
           permease component I [Amino acid transport and
           metabolism].
          Length = 287

 Score = 31.7 bits (72), Expect = 0.16
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 14  PQLLYAAIVVTLPIACISFVISLIIGFFIA-------------VIRIFFSDTIISLIMHF 60
             L    ++ +L IA +  +I L++G+ +A             ++ +       SL++  
Sbjct: 61  DSLYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRT 120

Query: 61  YVW--IFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIP 118
           Y W  I     L+ Q  +    +     +  +  A+II +   +  ++   + +++  I 
Sbjct: 121 YAWIVILGRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKID 180

Query: 119 KGQWDASYAIGLTRKQTIRHIILPQTIT 146
               +A+  +G +  QT R +ILP ++ 
Sbjct: 181 PSLLEAARDLGASPFQTFRRVILPLSLP 208


>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
           component [Posttranslational modification, protein
           turnover, chaperones].
          Length = 274

 Score = 31.3 bits (71), Expect = 0.21
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 19  AAIVVTLPIACISFVISLIIGFFIAVIRIFFS-------DTIISL---IMHFYVWIFRGT 68
           AA+ +TL  A  + +++L+ G  +A + + +        D ++ L   +      I    
Sbjct: 57  AALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLL 116

Query: 69  PLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAI 128
                  +     P       + + +I+++      ++   ++  +  I +   +A+ ++
Sbjct: 117 LFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSL 176

Query: 129 GLTRKQTIRHIILP 142
           G +  QT R +ILP
Sbjct: 177 GASPLQTFRRVILP 190


>gnl|CDD|38138 KOG2927, KOG2927, KOG2927, Membrane component of ER protein
           translocation complex [Intracellular trafficking,
           secretion, and vesicular transport].
          Length = 372

 Score = 30.4 bits (68), Expect = 0.38
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 60  FYVWIFRGTPLLVQLFVIFYGLPHIGIV 87
            YVWI+   PL+ Q+  + + L  + IV
Sbjct: 178 HYVWIYEPRPLMWQVLGVLFVLVTLAIV 205


>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease
           components [Carbohydrate transport and metabolism].
          Length = 295

 Score = 30.2 bits (68), Expect = 0.46
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 18/171 (10%)

Query: 18  YAAIVVTLPIACISFVISLIIGFFIAVI------------RIFFSDTIISLIMHFYVWIF 65
           + A+  TL    IS  + L++G  +A++             +FF    IS ++   +W +
Sbjct: 67  WNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKW 126

Query: 66  RGTP------LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPK 119
              P       L+ L  +   +  +     +  A+II      + ++  +  + + SIPK
Sbjct: 127 LFNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPK 186

Query: 120 GQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170
             ++A+   G +  Q  R I LP         L    I   +   +   +T
Sbjct: 187 ELYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYLLT 237


>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
           permease component II [Amino acid transport and
           metabolism].
          Length = 267

 Score = 29.4 bits (66), Expect = 0.88
 Identities = 22/128 (17%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 17  LYAAIVVTLPIACISFVISLIIGFF--IAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL 74
           L +A+  +L IA +S +++ ++G    +A+ R  F    +   +     +       + L
Sbjct: 63  LLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIAL 122

Query: 75  FVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQ 134
            ++F  L     +   F  I+++  +    ++  ++ + +    +   +A+  +G +  Q
Sbjct: 123 LLLFAALG----LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQ 178

Query: 135 TIRHIILP 142
           T R + LP
Sbjct: 179 TFRRVTLP 186


>gnl|CDD|30402 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
           ion transport and metabolism].
          Length = 304

 Score = 27.9 bits (62), Expect = 2.6
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 6   FNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRI-----FFSDTIISLIMHF 60
           F +++++  +L+    V    +A    +IS++I   +            S  +I+  +H 
Sbjct: 97  FEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHH 156

Query: 61  YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISI 117
              +     +LV L     G P      D   A++ISL +  + +   + + S+  +
Sbjct: 157 RSDVLTSLAVLVGLLGSLLGWP----WLDPLAALLISLYILKTGF--RLFKESVNEL 207


>gnl|CDD|31860 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
           proteins [Cell division and chromosome partitioning].
          Length = 858

 Score = 27.1 bits (59), Expect = 4.1
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 71  LVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIR 111
            +   +    LP+I I+ D +  +++         I+ + +
Sbjct: 628 KIAGAIPDEELPYIVIIIDEYADLMMVAGKELEELIARLAQ 668


>gnl|CDD|145962 pfam03098, An_peroxidase, Animal haem peroxidase. 
          Length = 512

 Score = 26.1 bits (58), Expect = 7.4
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 8/42 (19%)

Query: 173 EIFQTAQRIVSTTYQ--------PLIIYCELAFVYLILTSFC 206
           ++FQ A+ IV   YQ        P ++  +L  +  ++  + 
Sbjct: 242 QLFQEARLIVIAQYQKITYNEYLPALLGPDLMRLNWLIGYYT 283


>gnl|CDD|146605 pfam04063, DUF383, Domain of unknown function (DUF383). 
          Length = 190

 Score = 26.0 bits (58), Expect = 7.5
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 130 LTRKQTIRHIILPQTITTSAVPLS-----SEFISILKSTSVASTI 169
           L++ +  R   L        VPLS     +E  S ++   VASTI
Sbjct: 81  LSKFEEGRKYFLTPQRYDGVVPLSKLLVFTEHESTIRRGGVASTI 125


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.332    0.144    0.423 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,733,534
Number of extensions: 150903
Number of successful extensions: 939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 880
Number of HSP's successfully gapped: 193
Length of query: 226
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,318,927
Effective search space: 587374072
Effective search space used: 587374072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (25.3 bits)