RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] (226 letters) >gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]. Length = 222 Score = 173 bits (440), Expect = 3e-44 Identities = 85/211 (40%), Positives = 136/211 (64%), Gaps = 2/211 (0%) Query: 5 WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWI 64 L+ + L ++VTL + +S V+ L++G +A++R+ + + + YV I Sbjct: 6 GALLLNLDYLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGN-KPLRWLARAYVEI 64 Query: 65 FRGTPLLVQLFVIFYG-LPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWD 123 FRGTPLLVQLF I++G LP +GI D F A +I+L+LN AY++EI+R+ I S+PKGQW+ Sbjct: 65 FRGTPLLVQLFFIYFGLLPLLGIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWE 124 Query: 124 ASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVS 183 A+ A+GLT QT+R++ILPQ + PL ++FIS++K TS+ S I + E+ + AQ I + Sbjct: 125 AARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELTRAAQIIAA 184 Query: 184 TTYQPLIIYCELAFVYLILTSFCYIIQIKIE 214 T++P +Y A +YLIL ++ ++E Sbjct: 185 RTFRPFEVYLLAALIYLILCLPLSLLSRRLE 215 >gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]. Length = 228 Score = 148 bits (376), Expect = 9e-37 Identities = 78/227 (34%), Positives = 133/227 (58%), Gaps = 12/227 (5%) Query: 4 EWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVW 63 +++ ++ P+LL + + TL + IS VI ++ +A+ R+ + +S Y + Sbjct: 1 MYWDWFLEYLPRLL-SGLATTLWLLIISLVIGFVLALPLALARVS-KNRWVSWPARAYTY 58 Query: 64 IFRGTPLLVQLFVIFYGLPHIGIVFDS----------FVAIIISLTLNFSAYISEIIRSS 113 +FRGTPLLVQLF+I+YGL + +S + +++LTLN +AY +EI R + Sbjct: 59 VFRGTPLLVQLFLIYYGLGQFEWIRESIFLWPFLREAWFCAVLALTLNTAAYTTEIFRGA 118 Query: 114 IISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 I ++P+GQW+A+ A+G++R +T+R IILP + + S+E I +LKST++ASTIT+ + Sbjct: 119 IRAVPRGQWEAARALGMSRFKTLRRIILPSALRRALPAYSNEVILMLKSTALASTITVMD 178 Query: 174 IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 + A+ I S TY P ++ +YLI+T ++ IE H Sbjct: 179 LMGYARLINSRTYDPYEVFGIAGAIYLIITGILTLLFRLIERRWLAH 225 >gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism]. Length = 230 Score = 124 bits (314), Expect = 2e-29 Identities = 62/227 (27%), Positives = 121/227 (53%), Gaps = 15/227 (6%) Query: 8 LIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRG 67 L++ + L +VTL +A S ++ L++G A+ ++ + ++ L+ + Y + RG Sbjct: 1 LMLAGWGDELLQGALVTLELAVCSLILGLLLGLLGALGKLS-KNRLLRLLGNVYTTVIRG 59 Query: 68 TPLLVQLFVIFYG----LPHIGIVFDS----------FVAIIISLTLNFSAYISEIIRSS 113 P L+ + +I++G L + V + FVA +I+L L F AY +E +R + Sbjct: 60 VPELLLILLIYFGGQILLNTLADVTGALGVGFIDISPFVAGVIALGLIFGAYATETLRGA 119 Query: 114 IISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 ++PKGQ +A+ A+GL+R QT R I+LPQ + L + ++ +LK T++ S I + + Sbjct: 120 FKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKDTALVSLIGLND 179 Query: 174 IFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQH 220 + + Q +T +P Y A +YL++T ++ + +E ++ Sbjct: 180 LMRQTQLAAGSTKEPFTFYIVAALIYLVITLVSNVVLLFLERRASRG 226 >gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]. Length = 397 Score = 76.1 bits (187), Expect = 6e-15 Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 11/148 (7%) Query: 67 GTPLLVQL---FVIFYGLPHIG--------IVFDSFVAIIISLTLNFSAYISEIIRSSII 115 G PLL Q + + +P +G +V F A+ ++L+ +A+I+EI+R+ I Sbjct: 231 GLPLLAQWLFGAPLTFDVPALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIVRAGIQ 290 Query: 116 SIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIF 175 ++ KGQ +A+ ++GL T+R +I+PQ + PL+S+++++ K++S+A I P++ Sbjct: 291 AVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTSQYLNLTKNSSLAIAIGYPDLV 350 Query: 176 QTAQRIVSTTYQPLIIYCELAFVYLILT 203 A +++ T Q + + VYL L+ Sbjct: 351 AVAGTVLNQTGQAVEVVAIWMLVYLSLS 378 Score = 37.2 bits (86), Expect = 0.003 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPL 70 ++ + ++ TL +A + + + IIGF I + R+ + +I + YV IFR P Sbjct: 83 STYGRAFIVGLLNTLLVAALGIITATIIGFLIGIARLS-DNWLIRKLSTVYVEIFRNIPP 141 Query: 71 LVQLFVIFYGL 81 L+Q+F ++G+ Sbjct: 142 LLQIFFWYFGV 152 >gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.. Length = 190 Score = 65.0 bits (159), Expect = 1e-11 Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 4/186 (2%) Query: 21 IVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYG 80 ++ TL +A I+ +++L++G + +I + L+ + + P LV ++ Sbjct: 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLR-RIIDLLLSLPSLVLGLLLVLL 59 Query: 81 LPHIG---IVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIR 137 + I+ + +I L + + I R+++ SIPK +A+ A+G + Q R Sbjct: 60 FGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFR 119 Query: 138 HIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAF 197 IILP + L F L ++ S + E ++ +A Sbjct: 120 RIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAA 179 Query: 198 VYLILT 203 ++ Sbjct: 180 AVALIL 185 >gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices. Length = 183 Score = 54.2 bits (131), Expect = 3e-08 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 1/173 (0%) Query: 39 GFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISL 98 G + +I + ++ + + + P V ++ + + I+ + II Sbjct: 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVV-ISILSILGHGILPAIILA 59 Query: 99 TLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFIS 158 L ++ Y I R+++ S+P +A+ A+G +R Q R IILP + L+ F Sbjct: 60 LLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119 Query: 159 ILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQI 211 L + + Y I + LIL ++ I Sbjct: 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDI 172 >gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]. Length = 222 Score = 43.9 bits (104), Expect = 3e-05 Identities = 42/206 (20%), Positives = 95/206 (46%), Gaps = 16/206 (7%) Query: 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRI------FFSDTIISLIMHFYVWIFRGT 68 QLL+ A + TL + +S + + +IG + V+ + ++ I+ V I R Sbjct: 12 QLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSI 71 Query: 69 PLLVQLFVIFYGLPHIGIVFDSFV---AIIISLTLNFSAYISEIIRSSIISIPKGQWDAS 125 P ++ L + +P ++ + + A I+ LT+ + +++ ++ S++ + KG +A+ Sbjct: 72 PFIILLVAL---IPLTRLIVGTSIGTTAAIVPLTIGAAPFVARLVESALREVDKGVIEAA 128 Query: 126 YAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTT 185 A+G + Q IR ++LP+ + ++ IS++ +++A I + A R Sbjct: 129 QAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGAIGGGGLGDLAIRYGYQR 188 Query: 186 YQPLIIYCELAFVYLILTSFCYIIQI 211 + ++ +IL +IQ Sbjct: 189 FNTDVMV----VAVVILLILVQLIQS 210 >gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 289 Score = 40.2 bits (94), Expect = 5e-04 Identities = 33/151 (21%), Positives = 73/151 (48%), Gaps = 9/151 (5%) Query: 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPL 70 D +LLY A + +L I ++ +ISL+IG + ++ +F + ++M IF P Sbjct: 76 DILSRLLYGARI-SLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRI-TDIFLAFPS 133 Query: 71 LVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQW-DASYAIG 129 L+ ++ + I+ + +I++L L + I+R ++S+ + ++ +A+ A+G Sbjct: 134 LLLAILL------VAILGPGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARALG 187 Query: 130 LTRKQTIRHIILPQTITTSAVPLSSEFISIL 160 + + I ILP + V + + + Sbjct: 188 ASTLRIIFRHILPNVLPPLIVLATLDIGGAI 218 >gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 292 Score = 40.2 bits (94), Expect = 5e-04 Identities = 29/128 (22%), Positives = 65/128 (50%), Gaps = 3/128 (2%) Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAV-IRIFFSDTIISLIMHFYVWIFRGTP-LLVQL 74 + AIV TL + ++ +I + +G + + + + ++ ++ F + I P ++ L Sbjct: 69 IGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGL 128 Query: 75 FVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQ 134 F + + + +G F S +A ++L L + ++ ++P +A+YA+G T+ Q Sbjct: 129 FGLGFFVVTLGFGF-SALAGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQ 187 Query: 135 TIRHIILP 142 TI ++LP Sbjct: 188 TIFKVVLP 195 >gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]. Length = 258 Score = 38.6 bits (90), Expect = 0.001 Identities = 19/132 (14%), Positives = 55/132 (41%), Gaps = 12/132 (9%) Query: 16 LLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL--VQ 73 L+ ++ +L + F ++ ++G + ++ ++ ++ V + R P L Sbjct: 58 ELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSR--LLERLLDPLVQVLRPIPPLALAP 115 Query: 74 LFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRK 133 L ++++G+ + + + + +N + S+ + + +G +R Sbjct: 116 LAILWFGIGETSKIVIAVLGAFFPILIN--------TLDGVRSVDPDLLELARTLGASRW 167 Query: 134 QTIRHIILPQTI 145 Q +R +ILP + Sbjct: 168 QILRKVILPAAL 179 >gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]. Length = 281 Score = 38.6 bits (90), Expect = 0.001 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 6/148 (4%) Query: 3 YEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYV 62 Y F + +++V + +S ++S + + +A R + L++ Sbjct: 61 YRTVFSGGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLL--LT 118 Query: 63 WIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQW 122 + LL+ L+++ L + +++ +I+ + ++R +IPK Sbjct: 119 LMLPAQVLLIPLYLLMRKLG----LLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELE 174 Query: 123 DASYAIGLTRKQTIRHIILPQTITTSAV 150 +A+ G + Q I+LP A Sbjct: 175 EAARIDGASEFQIFFKIVLPLAKPGLAA 202 >gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 310 Score = 37.9 bits (88), Expect = 0.002 Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 14/138 (10%) Query: 19 AAIVVTLPIACISFVISLIIGFFIAV-IRIFFSDTIISLIMHFYVWIFRGTPLLV-QLFV 76 I TL + I+ +I++ +G A+ + + + ++ + + G P +V F Sbjct: 79 PPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFG 138 Query: 77 IFYGLP------------HIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDA 124 +F P ++G S + I L + I+ + R ++ ++P+ +A Sbjct: 139 LFVLAPFLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREA 198 Query: 125 SYAIGLTRKQTIRHIILP 142 +YA+G T+ +TIR +ILP Sbjct: 199 AYALGATKWETIRKVILP 216 >gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]. Length = 540 Score = 37.1 bits (86), Expect = 0.004 Identities = 29/170 (17%), Positives = 67/170 (39%), Gaps = 3/170 (1%) Query: 5 WFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWI 64 L F Q L ++++ L A ++ V++L++ + + +R S + L M Sbjct: 323 SLVLASPQFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERLSMLPLA-- 380 Query: 65 FRGTPLLVQLFVIFYGLPHIGIV-FDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWD 123 G L + L ++F + + + ++++ L F + +R+++ I + Sbjct: 381 VPGVVLALGLLLLFRAPDGLLYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEE 440 Query: 124 ASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPE 173 A+ ++G + + R I LP + F + S + P Sbjct: 441 AARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGSPG 490 Score = 35.6 bits (82), Expect = 0.013 Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 26/236 (11%) Query: 13 FPQLLYAAIVVTLPIACISFVISLIIGFFIAVI---------RIFFSDTIISLIMHFYVW 63 L+ + TL +A + ++S+++G +A + R+ + L++ +V Sbjct: 50 SDPYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVV 109 Query: 64 IF-------RGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIIS 116 PL L ++ + P I I+++L ++ +++ + Sbjct: 110 ALAWISLFGPSGPLAALLELLGFESPSI----YGLGGILLALVFFNYPLAYLLVLAALET 165 Query: 117 IPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIP---- 172 IP +A+ +G +R Q R + LP A F+ L + Sbjct: 166 IPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTPLILGGGYTTL 225 Query: 173 --EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK 226 I+Q L+ L +L + + K +S+++ + Sbjct: 226 ETAIYQAIMSSFDLARAALLALLLLLITAALLLLERRLRRAKQKSTLSGKGSRPKQ 281 >gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length = 733 Score = 35.4 bits (81), Expect = 0.013 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%) Query: 53 IISLIMHFYVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAY--ISEII 110 + L +F G L V L GI +D A+++ + F+ I I Sbjct: 552 ALWLSPELENALF-GGDLRVWL-------AQDGIGYDQRNALVVGFAMGFAVIPTIFSIA 603 Query: 111 RSSIISIPKGQWDASYAIGLTRKQTIRHIILP 142 +I S+PK D S A+G T QT+ +++L Sbjct: 604 EDAIFSVPKSLSDGSLALGATPWQTLIYVVLL 635 >gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 317 Score = 35.1 bits (81), Expect = 0.014 Identities = 27/174 (15%), Positives = 65/174 (37%), Gaps = 19/174 (10%) Query: 15 QLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTP----- 69 L+ + TL +A ++ ++++++G + ++ + I ++ + P Sbjct: 89 DLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLG 148 Query: 70 -LLVQLFVIFYGL------------PHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIIS 116 LL+ LF + G + ++L L A I+ + RSS++ Sbjct: 149 LLLILLFSVKLGWLPVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLE 208 Query: 117 IPKGQW-DASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTI 169 + + + A GL+ ++ + L + L + +L V T+ Sbjct: 209 VLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGLQLGGLLGGAVVVETV 262 >gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]. Length = 282 Score = 32.1 bits (73), Expect = 0.11 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71 + L+ +++V L A I+ + + + + R ++ + +F G L Sbjct: 70 PYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQ--MFPGVAAL 127 Query: 72 VQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLT 131 + L+V+ L + ++ +I++ + +I+ +IPK +A+ G T Sbjct: 128 IALYVLLKLLG----LLNTLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGAT 183 Query: 132 RKQTIRHIILP 142 R Q R I+LP Sbjct: 184 RFQIFRRILLP 194 >gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]. Length = 225 Score = 32.1 bits (73), Expect = 0.12 Identities = 25/136 (18%), Positives = 60/136 (44%), Gaps = 13/136 (9%) Query: 19 AAIVVTLPIACISFVISLIIGFFIAVI---RIFFSDTIISLIMHFYVWIFRGTPLLVQLF 75 A++++L +A IS ++ L +G +A + R F +++ ++ + + L L Sbjct: 7 TALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPL-VLPPVVLGFLLL 65 Query: 76 VIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEI---------IRSSIISIPKGQWDASY 126 V+F IG + + + ++ + + S + +R + +I + +A+ Sbjct: 66 VLFGRNGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAAR 125 Query: 127 AIGLTRKQTIRHIILP 142 +G +R + I LP Sbjct: 126 TLGASRWEVFFRITLP 141 >gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]. Length = 287 Score = 31.7 bits (72), Expect = 0.16 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 15/148 (10%) Query: 14 PQLLYAAIVVTLPIACISFVISLIIGFFIA-------------VIRIFFSDTIISLIMHF 60 L ++ +L IA + +I L++G+ +A ++ + SL++ Sbjct: 61 DSLYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRT 120 Query: 61 YVW--IFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIP 118 Y W I L+ Q + + + + A+II + + ++ + +++ I Sbjct: 121 YAWIVILGRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKID 180 Query: 119 KGQWDASYAIGLTRKQTIRHIILPQTIT 146 +A+ +G + QT R +ILP ++ Sbjct: 181 PSLLEAARDLGASPFQTFRRVILPLSLP 208 >gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]. Length = 274 Score = 31.3 bits (71), Expect = 0.21 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 10/134 (7%) Query: 19 AAIVVTLPIACISFVISLIIGFFIAVIRIFFS-------DTIISL---IMHFYVWIFRGT 68 AA+ +TL A + +++L+ G +A + + + D ++ L + I Sbjct: 57 AALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLL 116 Query: 69 PLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAI 128 + P + + +I+++ ++ ++ + I + +A+ ++ Sbjct: 117 LFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSL 176 Query: 129 GLTRKQTIRHIILP 142 G + QT R +ILP Sbjct: 177 GASPLQTFRRVILP 190 >gnl|CDD|38138 KOG2927, KOG2927, KOG2927, Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]. Length = 372 Score = 30.4 bits (68), Expect = 0.38 Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 60 FYVWIFRGTPLLVQLFVIFYGLPHIGIV 87 YVWI+ PL+ Q+ + + L + IV Sbjct: 178 HYVWIYEPRPLMWQVLGVLFVLVTLAIV 205 >gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]. Length = 295 Score = 30.2 bits (68), Expect = 0.46 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 18/171 (10%) Query: 18 YAAIVVTLPIACISFVISLIIGFFIAVI------------RIFFSDTIISLIMHFYVWIF 65 + A+ TL IS + L++G +A++ +FF IS ++ +W + Sbjct: 67 WNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKW 126 Query: 66 RGTP------LLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPK 119 P L+ L + + + + A+II + ++ + + + SIPK Sbjct: 127 LFNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPK 186 Query: 120 GQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT 170 ++A+ G + Q R I LP L I + + +T Sbjct: 187 ELYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYLLT 237 >gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]. Length = 267 Score = 29.4 bits (66), Expect = 0.88 Identities = 22/128 (17%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Query: 17 LYAAIVVTLPIACISFVISLIIGFF--IAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQL 74 L +A+ +L IA +S +++ ++G +A+ R F + + + + L Sbjct: 63 LLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIAL 122 Query: 75 FVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQ 134 ++F L + F I+++ + ++ ++ + + + +A+ +G + Q Sbjct: 123 LLLFAALG----LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQ 178 Query: 135 TIRHIILP 142 T R + LP Sbjct: 179 TFRRVTLP 186 >gnl|CDD|30402 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]. Length = 304 Score = 27.9 bits (62), Expect = 2.6 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 6 FNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRI-----FFSDTIISLIMHF 60 F +++++ +L+ V +A +IS++I + S +I+ +H Sbjct: 97 FEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHH 156 Query: 61 YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISI 117 + +LV L G P D A++ISL + + + + + S+ + Sbjct: 157 RSDVLTSLAVLVGLLGSLLGWP----WLDPLAALLISLYILKTGF--RLFKESVNEL 207 >gnl|CDD|31860 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]. Length = 858 Score = 27.1 bits (59), Expect = 4.1 Identities = 6/41 (14%), Positives = 17/41 (41%) Query: 71 LVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIR 111 + + LP+I I+ D + +++ I+ + + Sbjct: 628 KIAGAIPDEELPYIVIIIDEYADLMMVAGKELEELIARLAQ 668 >gnl|CDD|145962 pfam03098, An_peroxidase, Animal haem peroxidase. Length = 512 Score = 26.1 bits (58), Expect = 7.4 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Query: 173 EIFQTAQRIVSTTYQ--------PLIIYCELAFVYLILTSFC 206 ++FQ A+ IV YQ P ++ +L + ++ + Sbjct: 242 QLFQEARLIVIAQYQKITYNEYLPALLGPDLMRLNWLIGYYT 283 >gnl|CDD|146605 pfam04063, DUF383, Domain of unknown function (DUF383). Length = 190 Score = 26.0 bits (58), Expect = 7.5 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Query: 130 LTRKQTIRHIILPQTITTSAVPLS-----SEFISILKSTSVASTI 169 L++ + R L VPLS +E S ++ VASTI Sbjct: 81 LSKFEEGRKYFLTPQRYDGVVPLSKLLVFTEHESTIRRGGVASTI 125 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.332 0.144 0.423 Gapped Lambda K H 0.267 0.0736 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,733,534 Number of extensions: 150903 Number of successful extensions: 939 Number of sequences better than 10.0: 1 Number of HSP's gapped: 880 Number of HSP's successfully gapped: 193 Length of query: 226 Length of database: 6,263,737 Length adjustment: 90 Effective length of query: 136 Effective length of database: 4,318,927 Effective search space: 587374072 Effective search space used: 587374072 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 56 (25.3 bits)