RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] (226 letters) >3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 Score = 65.2 bits (158), Expect = 1e-11 Identities = 36/205 (17%), Positives = 85/205 (41%), Gaps = 6/205 (2%) Query: 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVI------RIFFSDTIISLIMHFYVWI 64 + LL + TL + +S +IG + V+ ++ + + V I Sbjct: 3 EPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNI 62 Query: 65 FRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDA 124 FR P ++ L + I A I+ LT+ + +I+ ++ ++++ IP G +A Sbjct: 63 FRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEA 122 Query: 125 SYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVST 184 S A+G T Q +R ++LP+ + + I+++ +++ + + Q + Sbjct: 123 SRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI 182 Query: 185 TYQPLIIYCELAFVYLILTSFCYII 209 Y ++ L + +++ + Sbjct: 183 GYNATVMNTVLVLLVILVYLIQFAG 207 >3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 Score = 51.5 bits (123), Expect = 2e-07 Identities = 22/208 (10%), Positives = 71/208 (34%), Gaps = 9/208 (4%) Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVI---------RIFFSDTIISLIMHFYVWIFRG 67 + ++I ++L ++ +++L++G I R+ S + +++ V Sbjct: 80 VISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIAL 139 Query: 68 TPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYA 127 + +I L D+ I++++ Y++ R S+ +A+ + Sbjct: 140 LTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARS 199 Query: 128 IGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQRIVSTTYQ 187 +G + + LP + + + + + + Sbjct: 200 LGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISY 259 Query: 188 PLIIYCELAFVYLILTSFCYIIQIKIES 215 L +A + +++T +++ + + Sbjct: 260 GLSASRPIAVLLILVTLSIFLVIRTLSA 287 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.0 bits (114), Expect = 2e-06 Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 86/234 (36%) Query: 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYV--WIFRGT 68 + P Y ++++PI S + IG +I L H+ V + T Sbjct: 223 SNTPDKDY---LLSIPI---SCPL---IG-------------VIQLA-HYVVTAKLLGFT 259 Query: 69 PLLVQLFVIFYGLP-HI-GIVFDSFVAIIIS---------------LTLNF-------SA 104 P +L G H G+V A+ I+ +T+ F A Sbjct: 260 PG--ELRSYLKGATGHSQGLV----TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313 Query: 105 YISEIIRSSII--SIPKGQWDASYAI---GLTRKQTIRHI-----ILPQT--ITTSAV-- 150 Y + + SI+ S+ + S + LT++Q ++ LP + S V Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373 Query: 151 --------PLSS--EFISILKSTSVASTIT---IPEIFQTAQRIVSTTYQPLII 191 P S L+ S + IP F ++R + + + L + Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP--F--SERKLKFSNRFLPV 423 Score = 27.6 bits (61), Expect = 2.6 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 29/101 (28%) Query: 131 TRKQTIRH------IILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQT-AQRIVS 183 TR T+ H +++P A L +F +PE + A Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-----------ILPEPTEGFAADDEP 54 Query: 184 TTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSV 224 T P EL +L Y+ + S V Q + Sbjct: 55 T--TPA----ELVGKFL-----GYVSSLVEPSKVGQFDQVL 84 Score = 26.4 bits (58), Expect = 5.8 Identities = 28/163 (17%), Positives = 48/163 (29%), Gaps = 47/163 (28%) Query: 69 PLLVQL---FVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDAS 125 + QL F P G D L F Y+S ++ S GQ+D Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS----KVGQFDQV 83 Query: 126 YAIGLTRKQT-------IRHII---LPQTITTSAVPLSSEFISILKSTSVASTITIPEI- 174 + LT + I H + L Q T+ + + E I + + + + Sbjct: 84 LNLCLTEFENCYLEGNDI-HALAAKLLQENDTT-LVKTKELIKNYITARIMAKRPFDKKS 141 Query: 175 ----FQTAQ----RIVS-------------------TTYQPLI 190 F+ ++V+ TY L+ Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Length = 514 Score = 34.4 bits (78), Expect = 0.022 Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 20/202 (9%) Query: 11 DSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPL 70 + + A V T+ + I+ +++ +G +A + + + ++ + + Sbjct: 271 EGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSF 330 Query: 71 LVQLFVIFYGLPHIGIVFDSFVAIII------------------SLTLNFSAYISEIIRS 112 + L G + A+ T Y+ + Sbjct: 331 ISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMG 390 Query: 113 SIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTIT-- 170 + +IP ++AS G Q I LP I + + F + + +T Sbjct: 391 LLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNG 450 Query: 171 IPEIFQTAQRIVSTTYQPLIIY 192 P+ T T Y Sbjct: 451 GPDRLGTTTPAGYTDLLVNYTY 472 >3bow_A Calpain-2 catalytic subunit; cysteine protease, calcium, inhibitor, cell membrane, cytoplasm, hydrolase, membrane, protease, thiol protease; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714 Score = 27.7 bits (61), Expect = 2.3 Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 65 FRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAY 105 F+ L Q+ V + + I FD+FV ++ L + F + Sbjct: 636 FKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIF 676 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 27.7 bits (60), Expect = 2.5 Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 3/15 (20%) Query: 11 DSFPQLLYAAIVVTL 25 DS P L AI T+ Sbjct: 35 DSAPAL---AIKATM 46 >3nyh_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, bromide, chloride, I MPD, thiocyanate ION; HET: SEP HEM NAG MAN; 1.77A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3erh_A* 3faq_A* 3fnl_A* 2z5z_A* 2o86_A* ... Length = 595 Score = 27.0 bits (59), Expect = 3.4 Identities = 5/22 (22%), Positives = 14/22 (63%), Gaps = 1/22 (4%) Query: 173 EIFQTAQRIVSTTYQPLIIYCE 194 +++Q A++I+ Q +I + + Sbjct: 291 KLYQEARKILGAFIQ-IITFRD 311 >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 1pth_A* 1u67_A* 1ht8_A* 1ebv_A* 1ht5_A* 1prh_A* Length = 553 Score = 26.8 bits (59), Expect = 3.9 Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 EIFQTAQRIVSTTYQPLIIY 192 ++FQTA+ I+ ++I Sbjct: 296 QLFQTARLILIGETIKIVIE 315 >1bml_C Streptokinase; human plasmin; 2.90A {Streptococcus equisimilis} SCOP: d.15.5.1 d.15.5.1 d.15.5.1 Length = 362 Score = 26.8 bits (59), Expect = 4.3 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 24/72 (33%) Query: 154 SEFISILKSTS------VASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCY 207 +F LK T + TIT E+ AQ I++ T+ Y Sbjct: 162 DDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPG------------------Y 203 Query: 208 IIQIKIESSVTQ 219 I + S VT Sbjct: 204 TIYERDSSIVTH 215 >1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A Length = 138 Score = 26.8 bits (59), Expect = 4.4 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 18/62 (29%) Query: 158 SILKSTSVASTITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSV 217 +LK+ ++ TIT E+ AQ I++ + Y I + S V Sbjct: 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPG------------------YTIYERDSSIV 74 Query: 218 TQ 219 T Sbjct: 75 TH 76 >1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 3f9p_C* Length = 466 Score = 26.5 bits (58), Expect = 5.4 Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Query: 173 EIFQTAQRIVSTTYQPLIIYCE 194 ++Q A++IV Q +I Y + Sbjct: 163 RLYQEARKIVGAMVQ-IITYRD 183 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Score = 25.8 bits (56), Expect = 7.8 Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 1/52 (1%) Query: 30 ISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQLFVIFYGL 81 + + I+ + +F + S++ +WIF + V + Sbjct: 829 GAIFLVDILATCFTIW-GWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQ 879 >3dns_A Ribosomal-protein-alanine acetyltransferase; MCSG, PSI, structural genomics, protein structure initiative; 2.10A {Clostridium acetobutylicum} Length = 135 Score = 25.9 bits (56), Expect = 8.4 Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 10/111 (9%) Query: 32 FVISLIIGFFIAVIRIFFSDTIISLIMHFYVWI---FRGTPLLVQLF-----VIFYGLPH 83 ++I+ G I I I + M + ++ +F Sbjct: 22 YLITDKYGITIGRIFIVDLNKDNRFCMFRMKIYKQGKSINTYIKEILSVFMEFLFKSNDI 81 Query: 84 IGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASYAIGLTRKQ 134 + + + II SII K + G+ K Sbjct: 82 NKVNIIVDEEVSTQPFVELGFAFEGIINKSIIE--KNVLKDEFLFGMDYKN 130 >1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Length = 328 Score = 25.7 bits (56), Expect = 9.7 Identities = 7/38 (18%), Positives = 13/38 (34%) Query: 173 EIFQTAQRIVSTTYQPLIIYCELAFVYLILTSFCYIIQ 210 I Q A R + L I ++A +++ Sbjct: 102 GILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK 139 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.332 0.144 0.423 Gapped Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,874,494 Number of extensions: 80635 Number of successful extensions: 264 Number of sequences better than 10.0: 1 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 45 Length of query: 226 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 137 Effective length of database: 3,535,514 Effective search space: 484365418 Effective search space used: 484365418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 55 (25.5 bits)