BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter
(permease) [Candidatus Liberibacter asiaticus str. psy62]
(226 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter
asiaticus str. psy62]
Length = 226
Score = 440 bits (1131), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF 60
MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF
Sbjct: 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF 60
Query: 61 YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG 120
YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG
Sbjct: 61 YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG 120
Query: 121 QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR 180
QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR
Sbjct: 121 QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR 180
Query: 181 IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK 226
IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK
Sbjct: 181 IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK 226
>gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 79.7 bits (195), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 40/217 (18%)
Query: 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71
SFP L T+ FV S ++G +++ S HF+ + PLL
Sbjct: 177 SFPTL-------TMDTNAKIFVFSFVLGIVLSLFATRLSR-------HFHEKTGKALPLL 222
Query: 72 -VQLFVIFYGLPHIGIV-------FDS-----------------FVAIIISLTLNFSAYI 106
+ F+IF GLP + ++ FD F+++ I+L+ +A+I
Sbjct: 223 YISTFLIF-GLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281
Query: 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166
+EI+RS +I++P+GQ +A+ A+GLT ++ R ++LPQ + + PL+S+++++LK++S+A
Sbjct: 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA 341
Query: 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILT 203
+ ++ I++ T Q + I F+YL L+
Sbjct: 342 VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 386
Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 18/165 (10%)
Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF---YVWIFRGTPLLVQ 73
L+ ++VTL I+ +IS+ +G +A+ R ++ I ++ + ++ +FRG PL+
Sbjct: 173 LWGGLLVTLVISFFGIIISMPLGILLALGR----NSNIPVLRYACITFIELFRGVPLVTV 228
Query: 74 LFVIFYGLPHIGIVF-------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASY 126
LF+ LP +F D + ++ ++ SAYI+E++R + SI KGQ++A+
Sbjct: 229 LFMASIMLP----LFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAAN 284
Query: 127 AIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITI 171
++GL+ Q +R II+PQ I + + FI + K +S+ S I +
Sbjct: 285 SLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 36.2 bits (82), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 105 YISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164
Y+S + I SIP+ D S +G TR +T++++I P +A P + I + S +
Sbjct: 359 YVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFP-----AAFPGIAGAILMTASRT 413
Query: 165 VASTITIPEIFQTAQRIVSTTYQPL 189
+ T+ + A R+ ++ +
Sbjct: 414 IGETMIVVLAAGVAARLQFNPFESM 438
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 511
Score = 25.4 bits (54), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 47 IFFSDTII----SLIMHFYVWIFRGTPL 70
+ +SD I + ++HF+ W +GTPL
Sbjct: 18 LMWSDEIKLSFSNFVLHFFPWGEKGTPL 45
>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 342
Score = 24.6 bits (52), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 120 GQWDASYAIGLTRKQTIRHIILPQTITTSAVPLS 153
G A YA+ LT + H+ILP I+ S PL+
Sbjct: 196 GDISALYALKLTNDRPSEHVILPDIISKS--PLA 227
>gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 280
Score = 23.1 bits (48), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 67 GTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96
G+PL+ Q F G+ +GI F +A+ I
Sbjct: 40 GSPLIGQDVGNFVGISPMGIKFSDNLAMAI 69
>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 652
Score = 21.9 bits (45), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 144 TITTSAVPLSSEFISILKS 162
TIT+SAV + E ++LKS
Sbjct: 559 TITSSAVEYAQEIANLLKS 577
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.332 0.144 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,074
Number of Sequences: 1233
Number of extensions: 5160
Number of successful extensions: 46
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 21
length of query: 226
length of database: 328,796
effective HSP length: 71
effective length of query: 155
effective length of database: 241,253
effective search space: 37394215
effective search space used: 37394215
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 37 (18.9 bits)