BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] (226 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] Length = 226 Score = 440 bits (1131), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/226 (100%), Positives = 226/226 (100%) Query: 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF 60 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF Sbjct: 1 MKYEWFNLIIDSFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF 60 Query: 61 YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG 120 YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG Sbjct: 61 YVWIFRGTPLLVQLFVIFYGLPHIGIVFDSFVAIIISLTLNFSAYISEIIRSSIISIPKG 120 Query: 121 QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR 180 QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR Sbjct: 121 QWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQTAQR 180 Query: 181 IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK 226 IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK Sbjct: 181 IVSTTYQPLIIYCELAFVYLILTSFCYIIQIKIESSVTQHTYSVDK 226 >gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 79.7 bits (195), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 40/217 (18%) Query: 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71 SFP L T+ FV S ++G +++ S HF+ + PLL Sbjct: 177 SFPTL-------TMDTNAKIFVFSFVLGIVLSLFATRLSR-------HFHEKTGKALPLL 222 Query: 72 -VQLFVIFYGLPHIGIV-------FDS-----------------FVAIIISLTLNFSAYI 106 + F+IF GLP + ++ FD F+++ I+L+ +A+I Sbjct: 223 YISTFLIF-GLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281 Query: 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 +EI+RS +I++P+GQ +A+ A+GLT ++ R ++LPQ + + PL+S+++++LK++S+A Sbjct: 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA 341 Query: 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILT 203 + ++ I++ T Q + I F+YL L+ Sbjct: 342 VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378 >gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 18/165 (10%) Query: 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF---YVWIFRGTPLLVQ 73 L+ ++VTL I+ +IS+ +G +A+ R ++ I ++ + ++ +FRG PL+ Sbjct: 173 LWGGLLVTLVISFFGIIISMPLGILLALGR----NSNIPVLRYACITFIELFRGVPLVTV 228 Query: 74 LFVIFYGLPHIGIVF-------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASY 126 LF+ LP +F D + ++ ++ SAYI+E++R + SI KGQ++A+ Sbjct: 229 LFMASIMLP----LFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAAN 284 Query: 127 AIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITI 171 ++GL+ Q +R II+PQ I + + FI + K +S+ S I + Sbjct: 285 SLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 >gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 36.2 bits (82), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 105 YISEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTS 164 Y+S + I SIP+ D S +G TR +T++++I P +A P + I + S + Sbjct: 359 YVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFP-----AAFPGIAGAILMTASRT 413 Query: 165 VASTITIPEIFQTAQRIVSTTYQPL 189 + T+ + A R+ ++ + Sbjct: 414 IGETMIVVLAAGVAARLQFNPFESM 438 >gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 25.4 bits (54), Expect = 0.94, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%) Query: 47 IFFSDTII----SLIMHFYVWIFRGTPL 70 + +SD I + ++HF+ W +GTPL Sbjct: 18 LMWSDEIKLSFSNFVLHFFPWGEKGTPL 45 >gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 342 Score = 24.6 bits (52), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 120 GQWDASYAIGLTRKQTIRHIILPQTITTSAVPLS 153 G A YA+ LT + H+ILP I+ S PL+ Sbjct: 196 GDISALYALKLTNDRPSEHVILPDIISKS--PLA 227 >gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 23.1 bits (48), Expect = 4.3, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 67 GTPLLVQLFVIFYGLPHIGIVFDSFVAIII 96 G+PL+ Q F G+ +GI F +A+ I Sbjct: 40 GSPLIGQDVGNFVGISPMGIKFSDNLAMAI 69 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 21.9 bits (45), Expect = 9.9, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 144 TITTSAVPLSSEFISILKS 162 TIT+SAV + E ++LKS Sbjct: 559 TITSSAVEYAQEIANLLKS 577 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.332 0.144 0.423 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 133,074 Number of Sequences: 1233 Number of extensions: 5160 Number of successful extensions: 46 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 21 length of query: 226 length of database: 328,796 effective HSP length: 71 effective length of query: 155 effective length of database: 241,253 effective search space: 37394215 effective search space used: 37394215 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 37 (18.9 bits)