HHsearch alignment for GI: 254781114 and conserved domain: cd02526
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.13 E-value=0.59 Score=24.61 Aligned_cols=136 Identities=11% Similarity=-0.008 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHH-HHHCCCCCCEEEEECC--C--CCCCCCC------CC
Q ss_conf 8999999999999999827998599973022133008999999-9841553775445113--6--6542221------12
Q gi|254781114|r 65 PEIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPH-LSKCDINNILIKFDAL--R--KKPKKDS------YL 133 (263)
Q Consensus 65 geigC~lSH~~~w~~~~~~~~~~~lIlEDD~~~~~~f~~~l~~-~~~~~~~~d~~~l~~~--~--~~~~~~~------~~ 133 (263)
T Consensus 56 ~N~G~a~g~N~Gi~~a~~~~~d~i~~ln~D~~~~~~~l~~l~~~~~~~~~~~~vg~~~p~~~d~~~~~~~~~~~~~~~~~ 135 (237)
T cd02526 56 ENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKL 135 (237)
T ss_pred CCCCHHHHCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 97785887274303341179778999357565590599999999985222798899971798689980045421125332
Q ss_pred CCCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHHCCCCC-HHHHHH-HHHHHCCCCEEEEECCCEECC
Q ss_conf 34677705899405798512356669999999996254578-046887-999975981799960313126
Q gi|254781114|r 134 CTLPGNFDIHQPRILSPRTTGYFIGKEAAIHLLNVRKNIYR-PIDMDM-KHWWEHNIPSLVTEPGAVYEA 201 (263)
Q Consensus 134 ~~~~~~~~l~~~~~~~~gt~aY~Is~~~AkkLl~~~~~~~~-pvD~~l-~~~~~~~l~~~~~~P~~v~~~ 201 (263)
T Consensus 136 ~~~~~~~~~~~~~~~~-~~sg~lir~~~~~~vG~fde~fF~y~ED~Dl~~R~~~~G~~i~~~p~a~v~H~ 204 (237)
T cd02526 136 RIQKEGEEGLKEVDFL-ITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred CCCCCCCCCCEECCEE-EECCEEEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCEEEECCEEEEEC
T ss_conf 2354424784460430-30143778999998579968977937199999999985997999898899978