HHsearch alignment for GI: 254781114 and conserved domain: pfam02434
>pfam02434 Fringe Fringe-like. The drosophila protein fringe (FNG) is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands. FNG is localized to the Golgi apparatus (not secreted as previously thought). Modification of Notch occurs through glycosylation by FNG. The xenopus homologue, lunatic fringe, has been implicated in a variety of functions.
Probab=97.57 E-value=0.0018 Score=39.13 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEE-EECCCCCCCCHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999999877997899-9663735289677420200002467887887899999999999999982799859997
Q gi|254781114|r 13 SHARREKFCHRAARIHLQFSF-FDAIYGENNPICNRIFSHQKRQCQFKRLLSLPEIGCYISHIHLWKRIAYSPAIGAIIL 91 (263)
Q Consensus 13 ~~~Rr~~~~~~~~~~gi~~e~-~~Avdg~~~~~~~~~~~~~~~~~~~~~~l~~geigC~lSH~~~w~~~~~~~~~~~lIl 91 (263)
T Consensus 17 H~sRl~~v~~TW~~~a~~~~~~fSD~~D~~lp~~~~---~~~~~~n~~~~h~~k~ls~~m~~--~~d~~~~~~~kWf~~~ 91 (248)
T pfam02434 17 HKTRLPLLLKTWISRAKHQTYIFTDGEDEGLPTRTG---GHLINTNCSAGHCRKALSCKMAV--EYDRFLESGKKWFCHV 91 (248)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHCCCCEEEEE
T ss_conf 798999999999843677489963777556675568---86102687776454555888899--9887764288669993
Q ss_pred EECCCCCC-CHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECHHHHHHHHH---
Q ss_conf 30221330-08999999984155377544511366542221123467770589940579851235666999999999---
Q gi|254781114|r 92 EDDADFSD-EFSQLLPHLSKCDINNILIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYFIGKEAAIHLLN--- 167 (263)
Q Consensus 92 EDD~~~~~-~f~~~l~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gt~aY~Is~~~AkkLl~--- 167 (263)
T Consensus 92 DDDtYvnv~rL~~lL~---~yn~s~d-iylG~~s~~-~~~~~~~~~~~~~--~~~f~faTGGaG~ciSR~la~km~P~~s 164 (248)
T pfam02434 92 DDDNYVNVPRLVRLLS---CYNHTQD-VYLGKPSLY-RPIEATERVKNNR--KVGFWFATGGAGFCISRGLALKMSPWAS 164 (248)
T ss_pred CCCCEECHHHHHHHHH---CCCCCCC-EEECCCCCC-CCCCCCCCCCCCC--CCCEEEECCCCEEEEEHHHHHHHHHHCC
T ss_conf 5873205788999973---1687788-672353567-7542201234567--5643554389529976999986404215
Q ss_pred ------HHCCCCCHHHHHHHHHHHCCCCEEEEECCCEECCC
Q ss_conf ------62545780468879999759817999603131267
Q gi|254781114|r 168 ------VRKNIYRPIDMDMKHWWEHNIPSLVTEPGAVYEAI 202 (263)
Q Consensus 168 ------~~~~~~~pvD~~l~~~~~~~l~~~~~~P~~v~~~~ 202 (263)
T Consensus 165 ~~~~~s~~~~i~lPDD~tlG~ii~~~Lgv~lt~s~lFHs~~ 205 (248)
T pfam02434 165 GGRFMSTSEKIRLPDDCTLGYIIENLLGVPLTHSPLFHSHL 205 (248)
T ss_pred CCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCEECHHHHHCC
T ss_conf 89875453455799746620231423588756555655238