RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781114|ref|YP_003065527.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 33.3 bits (76), Expect = 0.034
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 165 LLNV--RKNIYRPIDMDM---KHWWEHNIPSLVTEPGAVYEAIDTNDSTIEESRLVRKPT 219
            LN+  RK   R +       K W E+ + +L  E   +  + D N+  +E +R +    
Sbjct: 23  NLNMKYRK---RQLVTREAQIKDWVENELEALKLEAEEI-PSEDQNEFLLERTREIHNEA 78

Query: 220 FSPLYFYRNTCYQWNLHYNAWRKDLPPVS 248
            S L   R    QW   +  +++D P ++
Sbjct: 79  ESQL---RAAQQQWGNDF--YKRD-PRIA 101


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 29.0 bits (65), Expect = 0.75
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 13/36 (36%)

Query: 208 TIEESRLVRKPTFSPLYFYRNTCYQWNLHYNAWRKD 243
           +IE   LV       + FYR    Q      A  +D
Sbjct: 7   SIES--LVE------VVFYRGMTMQ-----VAVPRD 29


>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima
           MSB8} (A:131-266)
          Length = 136

 Score = 26.4 bits (58), Expect = 4.4
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 80  IAYSPAIGAIILEDDADFSDEFSQLLPHLSKC--DINNILIKFDALRKKPKKDSYLCTLP 137
            A+  +   I+   D        +      +   D+ +IL  F+ + K   KD+   TL 
Sbjct: 50  FAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLV 109

Query: 138 GNF 140
              
Sbjct: 110 XXV 112


>1wwy_A Thioredoxin-like protein 1; structural genomics,
           hypothetical protein, regulatory protein, apoptosis,
           cancer; NMR {Homo sapiens} (A:)
          Length = 171

 Score = 26.3 bits (58), Expect = 4.7
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 5/69 (7%)

Query: 87  GAIILEDDADF--SDEFSQLL---PHLSKCDINNILIKFDALRKKPKKDSYLCTLPGNFD 141
               L  D  F  SD   QLL          + ++  +     + PK       LP + D
Sbjct: 32  FDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMD 91

Query: 142 IHQPRILSP 150
             +     P
Sbjct: 92  FEEAERSEP 100


>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase,
           alpha-beta barrel; HET: KCX; 1.62A {Deinococcus
           radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A*
           3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* (A:)
          Length = 339

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 7/53 (13%), Positives = 16/53 (30%)

Query: 66  EIGCYISHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILI 118
           ++G  + H H+            +   D A      ++    L    I  ++ 
Sbjct: 30  QLGATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVD 82


>3f4c_A Organophosphorus hydrolase; alpha-beta barrel,
           amidohydrolase, binuclear metal enzyme, glycerol-bound;
           HET: KCX; 2.07A {Geobacillus stearothermophilus 10} PDB:
           3f4d_A* (A:)
          Length = 332

 Score = 25.5 bits (54), Expect = 6.9
 Identities = 3/47 (6%), Positives = 10/47 (21%)

Query: 72  SHIHLWKRIAYSPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILI 118
            H H                  + +      +    + +  I  ++ 
Sbjct: 22  IHEHFLFGYPGFQGDVTRGTFREDEALRVAVEAAEKMKRHGIQTVVD 68


>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
           {Galactomyces geotrichum} (A:361-440,A:529-544)
          Length = 96

 Score = 25.6 bits (56), Expect = 7.7
 Identities = 3/24 (12%), Positives = 7/24 (29%)

Query: 94  DADFSDEFSQLLPHLSKCDINNIL 117
                     +    S+  I+ +L
Sbjct: 8   TPHVKKWLQYIFYDASEASIDRVL 31


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,232,354
Number of extensions: 103996
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 14
Length of query: 263
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 176
Effective length of database: 2,015,014
Effective search space: 354642464
Effective search space used: 354642464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)