RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781114|ref|YP_003065527.1| glycosyl transferase family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)



>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score = 25.7 bits (56), Expect = 4.3
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 83  SPAIGAIILEDDADFSDEFSQLLPHLSKCDINNILIKFDALRKKPKKDSYLCTLPGNFDI 142
           SP +  +I +D+  +  +   +  H ++ D+  + I    +  + ++ +           
Sbjct: 1   SPGV--VISDDEPGYDLDLFCIPNHYAE-DLERVFIPHGLIMDRTERLARDVM--KEMGG 55

Query: 143 HQPRILSPRTTGYFIGKEAAIHLLNVRKNIYRPIDMDMKHWWEHN 187
           H    L     GY    +   ++  + +N  R I M +      +
Sbjct: 56  HHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKS 100


>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor
           alpha subunit, N-terminal domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 129

 Score = 24.4 bits (53), Expect = 10.0
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 58  FKRLLSLPEIGCYISHIHLWKRIAYSPAIG----AIILEDDADFSDEFSQLL 105
           F+++L+L  +   I  +H   R  Y   I       +L    DF ++F +LL
Sbjct: 70  FQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLL 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,096,526
Number of extensions: 52473
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 8
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)