HHsearch alignment for GI: 254781115 and conserved domain: COG0617

>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=533.58  Aligned_cols=385  Identities=28%  Similarity=0.373  Sum_probs=281.6

Q ss_pred             HHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCE
Q ss_conf             22199889999999997898599970699888778898608999808989999999876995621343144699998998
Q gi|254781115|r    8 KWFHDSDLINILSLLNKGEDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIKIICRKK   87 (416)
Q Consensus         8 ~~~~~~~~~~i~~~l~~~g~~~~~VGG~VRD~ll~~~~~DiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~   87 (416)
T Consensus         4 ~~~~~~~~~~v~~~l~~~g~eaylVGGaVRD~LLG~~~~D~Diat~~~p~~~~~~~~----~~~~~G~~f~t~~v~~~~~   79 (412)
T COG0617           4 LKDLSPNALKVLSKLKEAGYEAYLVGGAVRDLLLGRPPKDVDIATNATPEEVKKLFR----NTRPVGRKFGTVTVPFNGE   79 (412)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCEEEEECCCHHHHHHHHH----HHHHCCCCCCEEEECCCCE
T ss_conf             133327899999999966985999732087877699966753771288799999987----4010166766589754985


Q ss_pred             EEEEECCCCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCCEEECC-CCHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCC
Q ss_conf             886421344667-68874322332013321044780030020003-2101320000688878777642764310010421
Q gi|254781115|r   88 YFDITTLRSDLI-TDGRYAKVVFTRDWKADSLRRDFTINALYADQ-QGKVIDYVGGLNDLRNRTIKFIGDAHHRILEDYL  165 (416)
Q Consensus        88 ~~di~~~R~e~~-~~~~~~~~~~~~~~~eDl~RRDFTINAla~~~-~~~l~Dp~gG~~DL~~~~ir~v~~~~~rf~EDpL  165 (416)
T Consensus        80 ~~ev~T~R~~~~~~~~~~~~~~~~~tleeDl~RRDFTINAla~~~~~~~iiD~~gG~~DL~~~~lR~i~~~~~rf~EDpl  159 (412)
T COG0617          80 IIEVTTFRKEGYGYNGRPLPVVFPGTLEEDLKRRDFTINALAYDPEDGEIIDPFGGLKDLENRVLRHIGDASERFREDPL  159 (412)
T ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCCCCEECCCCCCHHHHCCCEEECCCCCHHCCCCCHH
T ss_conf             89998730357776788778788999587565658609871468656905079899768717857534682420452648


Q ss_pred             CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             00332012201364331111000123333210222057768878864211018999998753002334688701058578
Q gi|254781115|r  166 RILRFFRFFAHYGEKNIDSDGLVASIKAKKGLKILSSERIWSEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQ  245 (416)
Q Consensus       166 RiLRa~RFasrlg~f~id~~t~~ai~~~~~~L~~iS~ERI~~El~KiL~~~~~~~~l~~L~~~gll~~ifpel~~~~~~~  245 (416)
T Consensus       160 RiLRa~RFaa~l~-f~i~~~t~~~i~~~~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~~~~~~  238 (412)
T COG0617         160 RILRAARFAARLG-FTIEPETEEAIRLMAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDKLFGVP  238 (412)
T ss_pred             HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCCHHHHHCCH
T ss_conf             9999999999837-889856999999998764408888999999999779989999999998698654296044433000


Q ss_pred             --HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHH-------------HCCCHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             --98778677631788016766652047768578998875-------------303425677778888754114333672
Q gi|254781115|r  246 --LSQVIEAEQVFEWKIDSLLRFIVLISWQDKKSILSMAK-------------KFSLPREIRYFLISFFNCNFNQKTLSI  310 (416)
Q Consensus       246 --l~~~~~~~~~~~~~~~~~lrla~Ll~~~~~~~~~~~~~-------------rlkl~~~~~~~l~~~~~~~~~~~~~~~  310 (416)
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  316 (412)
T COG0617         239 KLLLALREIELLLHNTDELLLALAALLPAFL-LAAATLPLLLRKGKTIAKKRRELKHDEAAAKAVNDLLKRLLRPNYLG-  316 (412)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             2567789999851341159999987473467-78876315677676578877531415667777999999874113556-


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHHHH
Q ss_conf             46678998708024551698999864077760138999999987751288888988789996-58987779999999999
Q gi|254781115|r  311 PEIKKLFYLYGDKVMIAKLKIFLALHYNNLTHQDTCFILQVLSDIIHWKKPLFPLTGDDVVK-YGIPPGKKVGNILVHCK  389 (416)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~pI~G~dL~~-~Gi~pGp~iG~iL~~l~  389 (416)
T Consensus       317 -~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  385 (412)
T COG0617         317 -YLKR---------LVEEVREIWHEAGELLPR-TGKRARKLLRLLAFRAALELLILGRDLGEAAGYKPGPKLGEILQLLE  385 (412)
T ss_pred             -HHHH---------HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             -6789---------999999999999875101-02334558777999976666651242033217765338999999875


Q ss_pred             HHHHCCCCCCCHHHHHHHHHH
Q ss_conf             999638888898999999999
Q gi|254781115|r  390 QEWINSSFQLSQEDLHHLLRK  410 (416)
Q Consensus       390 ~~~i~~~~~n~~e~l~~~lk~  410 (416)
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~  406 (412)
T COG0617         386 EKPLKGVIKNLKEALIERLER  406 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
T ss_conf             200122223046777887502